2WOZA

The novel beta-propeller of the btb-kelch protein krp1 provides the binding site for lasp-1 that is necessary for pseudopodia extension
Total Genus 54

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
318
structure length
307
Chain Sequence
PGYLNDIPRHGMFVKDLILLVNDTAAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAIGGFAMIQEFAPTEVNDIWKYEDDKKEWAGMLKEIRYASGASCLATRLNLFKLSKL
5010015020025030030025020015010050
01020304050Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
TVIII1 (291-294)EMPTYS1 (302-309)Updating...
connected with : NaN
molecule tags Protein binding
source organism Rattus norvegicus
publication title Novel beta-propeller of the BTB-Kelch protein Krp1 provides a binding site for Lasp-1 that is necessary for pseudopodial extension.
pubmed doi rcsb
molecule keywords KELCH REPEAT AND BTB DOMAIN-CONTAINING PROTEIN 10
total genus 54
structure length 307
sequence length 318
ec nomenclature
pdb deposition date 2009-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01344 Kelch_1 Kelch motif
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.120.10.80 Mainly Beta 6 Propeller Neuraminidase Kelch-type beta propeller 2wozA00
2VPJA 4CHBA 2ZZKA 4IQKA 5FNTA 4IN4A 5FZNA 5FNQA 2DYHA 4N1BA 3WDZA 4ASCA 2XN4A 5FNRA 1X2RA 3ZGDA 4L7CA 5FZJA 4ZGCA 4L7DA 4YY8A 1ZGKA 3ADEA 3WN7A 4IFLX 2FLUX 1X2JA 3II7A 5F72C 2WOZA 4L7BA 4XMBA 4ZY3A 4IFJA 3VNHA 5CGJA 1U6DX 2Z32A 5FNSA 4CH9A 2ZWAA 3VNGA 2ZW9A 4IFNX 3ZGCA 5FNUA
chains in the Genus database with same CATH superfamily
4CHBA 3GVKA 1F8BA 1A4GA 5D9CA 2F28A 5GX3A 1NN2A 2HQSA 3SOQA 2G8SA 3BYCA 2DSOA 3TICA 3IAXA 5FNRA 4MWYA 4QN4A 4XYXA 1CRZA 4MWJA 4NN9A 4DGRA 4FJ6A 3SRGA 2YA8A 3ALWA 4X47A 2X9MA 3KYAA 2W5NA 1Z4WA 3SLIA 1NPEA 4SLIA 1MS5A 5HX0A 4FPHA 1MZ6A 3T1EA 2QWAA 4WEFA 1NCCN 2QWDA 4HIZA 2OJHA 1C9UA 5B2DA 4A0PA 5M1ZA 3D12A 3K3AA 5FZJA 4XJ8A 3ADEA 5EO7A 4X4AA 1Z4VA 4YZ5A 1MZ5A 4BBWA 1F8DA 2DG1A 1X2JA 2F12A 2ZB5A 3A72A 4QN7A 4CPZA 1WCQA 2QWEA 1MWEA 1U6DX 5FNSA 4B7JA 2W8BA 3VNGA 4UOUA 4FPYA 5HUMA 1N6DA 2QWIA 4FP2A 4YW4A 4CSDA 2QWHA 3WDZA 4GDIA 1NNCA 1POOA 2F29A 3G4EA 3SOBB 1IVCA 1MS0A 1SUUA 1WCSA 3DR2A 2FLUX 2VAQA 1IVGA 4H53A 3II7A 3L6VA 1W0PA 4D52B 1N7DA 4KS4A 3HLIA 4X49A 4YZ3A 1F8EA 2Z32A 1BJIA 2AGSA 4WA5A 4C1YA 1QLGA 2JKBA 2FHRA 3CL2A 4CPLA 1IVBA 5FNQA 2YA5A 1NMBN 3BEQA 3LI4A 4WEGA 4FVKA 3NSSA 1V04A 4GN8A 1DILA 4HHOA 1MS8A 1XOEA 4IYGA 3GVJA 4J9TA 2VK6A 4CPMA 4IMBA 5HUNA 2AEQA 1MS1A 1NMCA 2IASA 4CH9A 2VW2A 4HW6A 2IAWA 3SALA 2W5OA 1S18A 3I1CA 3JU4A 1MS4A 4XILA 2SILA 4UF7A 1NCDN 4ZLRA 4AGTA 3S8ZA 4QN5A 5NN9A 4JMLA 2AH2A 2HU4A 2GVVA 4FZHA 2HTUA 4YW3A 2YDPA 1S0JA 4D52C 5F9TA 5GX2A 5D9BA 2WOZA 2F10A 1H6LA 4H52A 2F0ZA 3VNHA 2IVZA 4XHXA 4B7QA 1N1TA 3V1SA 4XE9A 1EUUA 2VPJA 1WP5A 1EURA 3CYEA 4YZ1A 3FVZA 2GVWA 4XIOA 4ASCA 4FPOB 1NCBN 2VK7A 3TIAA 3KGGA 4GZQA 1SNTA 2QWFA 3D11A 4X6KA 1K32A 1S0IA 4IFLX 3AMRA 2F11A 1N6EA 2IAVA 2VW1A 4GZWA 3TI6A 1INYA 2ZWAA 4MWWA 2QE8A 3ZGCA 1W0OA 4HZWA 1V3CA 4NCSA 3AMSA 5FZNA 5GX4A 1B9TA 1INHA 5JYYA 2HTVA 2HTWA 4ZGCA 3HLHA 3Q6PA 3FW0A 2FPCA 3GVLA 1E8VA 4FOYA 1V0FA 1N1YA 5HUKA 3LI5A 2F25A 1NSCA 1NCAN 2YA4A 2IAOA 1EUTA 4M4VA 1V2IA 2XZJA 4MZAA 4CPOA 1X2RA 1INWA 2VVZA 1N1VA 2IAQA 2F24A 1L7HA 5FWWA 2HTRA 4WA4A 4O5TA 1USXA 4WA3A 2BERA 3OPZA 4FPLA 4AH4A 1Z4XA 1MS3A 3O9KA 1B9SA 4FQ4A 2SIMA 1L7GA 3P5BL 4NC5A 4GEZA 4YW5A 3PJQA 4K1JA 1INFA 3K36A 4HZXA 2VSMA 1RWIA 4Q1UA 4XMIA 3SREA 3SILA 1Z50A 4XHBA 1ZI0A 6NN9A 4GNCA 3TI3A 4YW1A 4MZEA 1CRUA 2HT8A 4XOGA 1IVDA 1V3EA 1C5KA 3G4HA 2FPBA 3H72A 4O5SA 4MWLA 4XJ9A 4XJRA 4G3NA 4MWVA 3S8VA 1W21A 3A9GA 2F27A 4D52A 4YZ2A 2ZZKA 5D9DA 1NMAN 2HT5A 2H2UA 2P4OA 2VK5A 4XMAA 3TI8A 4GN7A 3WW9A 1SLIA 3UC1A 1Q7FA 3B69A 4L7DA 1SO7A 2VWDA 4JF7A 2VSKA 1W8OA 4MWQA 2XZKA 3SOVA 1W1XA 2FP8A 3CL0A 4I00A 4B7RA 1CQ1A 4K3YA 1OFZA 1NNBA 2ISMA 1W8NA 2VW0A 4GZPA 4D8SA 2QWJA 5FNUA 2QWCA 1QBIA 3S94A 4MC7A 4IN4A 2XZIA 2V91A 1F8CA 4KS2A 4M3MA 3H71A 4CPYA 4GNAA 2B8HA 2F13A 2XCYA 2HTQA 4K1IA 3TIBA 4GZSA 1N6FA 4B7NA 4XJZA 4GB1A 2CMLA 1VCJA 2HU0A 3TI4A 1INVA 2IATA 1IJQA 1E1AA 1Z4YA 4MJUA 1IVEA 4Q6KA 1IUCA 4PWZA 4GZOA 3K37A 2XN4A 4L7CA 3HRPA 2QWGA 4YY8A 2RKCA 3H6JA 4GN9A 4HHQA 3INBA 3DASA 2W8BB 2IAXA 3NO0A 3SANA 2C4AA 2GVXA 4MJVA 3O9JA 4FOWA 4FPEA 4MWRA 3Q6KA 2YDTA 3Q6TA 7NN9A 5FNTA 1IVFA 4GZTA 3E5ZA 3ZGDA 2YA6A 2GHSA 2H2NA 1CVMA 3H73A 2DG0A 2W38A 3TC9A 3K39A 1VCUA 4K1KA 5GTQA 1MS9A 2C4LA 4FPGA 4D4UA 4GNBA 1MR5A 4L7BA 2A75A 1B9VA 4C1YB 1E8TA 4FP3A 4QN3A 3A9HA 4GDJA 2ZW9A 4IFNX 4M4NA 2YA7A 3K38A 1S1DA 1V3DA 1Z4ZA 4GZXA 4XIKA 4B7MA 3S2KA 2DYHA 1KITA 2IAPA 3NN9A 4K1HA 4FPJA 4KS5A 1SLLA 1USRA 2IARA 3B7EA 1NSDA 4FOQA 2F26A 1PJXA 1N1SA 5H47A 3ALXA 4DG6A 3W09A 1INXA 3U0SA 4IFJA 1RWLA 4QN6A 2QWBA 4MWXA 5HUGA 4GJTA 4QNPA 4XJAA 4CPNA 1IUBA 4FPCA 2ZB6A 2HTYA 4MX0A 4N1BA 1NSBA 2FP9A 4HZVA 5B2CA 1W20A 2BF6A 1L7FA 4KS1A 2BATA 1NNAA 1DIMA 1ZGKA 4FPKA 2POOA 1XOGA 2BZDA 5F72C 4ZY3A 4FOVA 1V0ZA 1V3BA 3A71A 2GVUA 5EO8A 3TI5A 3O4PA 4IQKA 4XJQA 2HT7A 4YZ4A 4YW2A 1EUSA 2SLIA 3LI3A 4AGIA 3V64C 4AHAA 2W20A 1V0EA 2AEPA 4MWUA 4KS3A 4M4UA 1A14N 3CKZA 2IAUA 4XJUA 3WN7A 4HZZA 5EX7A 4XJWA 4XMBA 3V65B 5GX1A 4FPFA 3WWAA 5CGJA 4HZYA 2QWKA 1A4QA 4R40A 1E8UA 5GX5A 1INGA
chains in the Genus database with same CATH topology
2VPJA 4CHBA 2ZZKA 4IQKA 5FNTA 4IN4A 5FZNA 5FNQA 2DYHA 4N1BA 3WDZA 4ASCA 2XN4A 5FNRA 1X2RA 3ZGDA 4L7CA 5FZJA 4ZGCA 4L7DA 4YY8A 1ZGKA 3ADEA 3WN7A 4IFLX 2FLUX 1X2JA 3II7A 5F72C 2WOZA 4L7BA 4XMBA 4ZY3A 4IFJA 3VNHA 5CGJA 1U6DX 2Z32A 5FNSA 4CH9A 2ZWAA 3VNGA 2ZW9A 4IFNX 3ZGCA 5FNUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VPJ A;  4CHB A;  2ZZK A;  4IQK A;  5FNT A;  4IN4 A;  5FZN A;  5FNQ A;  2DYH A;  4N1B A;  3WDZ A;  4ASC A;  2XN4 A;  5FNR A;  1X2R A;  3ZGD A;  4L7C A;  5FZJ A;  4ZGC A;  4L7D A;  4YY8 A;  1ZGK A;  3ADE A;  3WN7 A;  4IFL X;  2FLU X;  1X2J A;  3II7 A;  5F72 C;  2WOZ A;  4L7B A;  4XMB A;  4ZY3 A;  4IFJ A;  3VNH A;  5CGJ A;  1U6D X;  2Z32 A;  5FNS A;  4CH9 A;  2ZWA A;  3VNG A;  2ZW9 A;  4IFN X;  3ZGC A;  5FNU A; 
#chains in the Genus database with same CATH topology
 4CHB A;  3GVK A;  1F8B A;  1A4G A;  5D9C A;  2F28 A;  5GX3 A;  1NN2 A;  2HQS A;  3SOQ A;  2G8S A;  3BYC A;  2DSO A;  3TIC A;  3IAX A;  5FNR A;  4MWY A;  4QN4 A;  4XYX A;  1CRZ A;  4MWJ A;  4NN9 A;  4DGR A;  4FJ6 A;  3SRG A;  2YA8 A;  3ALW A;  4X47 A;  2X9M A;  3KYA A;  2W5N A;  1Z4W A;  3SLI A;  1NPE A;  4SLI A;  1MS5 A;  5HX0 A;  4FPH A;  1MZ6 A;  3T1E A;  2QWA A;  4WEF A;  1NCC N;  2QWD A;  4HIZ A;  2OJH A;  1C9U A;  5B2D A;  4A0P A;  5M1Z A;  3D12 A;  3K3A A;  5FZJ A;  4XJ8 A;  3ADE A;  5EO7 A;  4X4A A;  1Z4V A;  4YZ5 A;  1MZ5 A;  4BBW A;  1F8D A;  2DG1 A;  1X2J A;  2F12 A;  2ZB5 A;  3A72 A;  4QN7 A;  4CPZ A;  1WCQ A;  2QWE A;  1MWE A;  1U6D X;  5FNS A;  4B7J A;  2W8B A;  3VNG A;  4UOU A;  4FPY A;  5HUM A;  1N6D A;  2QWI A;  4FP2 A;  4YW4 A;  4CSD A;  2QWH A;  3WDZ A;  4GDI A;  1NNC A;  1POO A;  2F29 A;  3G4E A;  3SOB B;  1IVC A;  1MS0 A;  1SUU A;  1WCS A;  3DR2 A;  2FLU X;  2VAQ A;  1IVG A;  4H53 A;  3II7 A;  3L6V A;  1W0P A;  4D52 B;  1N7D A;  4KS4 A;  3HLI A;  4X49 A;  4YZ3 A;  1F8E A;  2Z32 A;  1BJI A;  2AGS A;  4WA5 A;  4C1Y A;  1QLG A;  2JKB A;  2FHR A;  3CL2 A;  4CPL A;  1IVB A;  5FNQ A;  2YA5 A;  1NMB N;  3BEQ A;  3LI4 A;  4WEG A;  4FVK A;  3NSS A;  1V04 A;  4GN8 A;  1DIL A;  4HHO A;  1MS8 A;  1XOE A;  4IYG A;  3GVJ A;  4J9T A;  2VK6 A;  4CPM A;  4IMB A;  5HUN A;  2AEQ A;  1MS1 A;  1NMC A;  2IAS A;  4CH9 A;  2VW2 A;  4HW6 A;  2IAW A;  3SAL A;  2W5O A;  1S18 A;  3I1C A;  3JU4 A;  1MS4 A;  4XIL A;  2SIL A;  4UF7 A;  1NCD N;  4ZLR A;  4AGT A;  3S8Z A;  4QN5 A;  5NN9 A;  4JML A;  2AH2 A;  2HU4 A;  2GVV A;  4FZH A;  2HTU A;  4YW3 A;  2YDP A;  1S0J A;  4D52 C;  5F9T A;  5GX2 A;  5D9B A;  2WOZ A;  2F10 A;  1H6L A;  4H52 A;  2F0Z A;  3VNH A;  2IVZ A;  4XHX A;  4B7Q A;  1N1T A;  3V1S A;  4XE9 A;  1EUU A;  2VPJ A;  1WP5 A;  1EUR A;  3CYE A;  4YZ1 A;  3FVZ A;  2GVW A;  4XIO A;  4ASC A;  4FPO B;  1NCB N;  2VK7 A;  3TIA A;  3KGG A;  4GZQ A;  1SNT A;  2QWF A;  3D11 A;  4X6K A;  1K32 A;  1S0I A;  4IFL X;  3AMR A;  2F11 A;  1N6E A;  2IAV A;  2VW1 A;  4GZW A;  3TI6 A;  1INY A;  2ZWA A;  4MWW A;  2QE8 A;  3ZGC A;  1W0O A;  4HZW A;  1V3C A;  4NCS A;  3AMS A;  5FZN A;  5GX4 A;  1B9T A;  1INH A;  5JYY A;  2HTV A;  2HTW A;  4ZGC A;  3HLH A;  3Q6P A;  3FW0 A;  2FPC A;  3GVL A;  1E8V A;  4FOY A;  1V0F A;  1N1Y A;  5HUK A;  3LI5 A;  2F25 A;  1NSC A;  1NCA N;  2YA4 A;  2IAO A;  1EUT A;  4M4V A;  1V2I A;  2XZJ A;  4MZA A;  4CPO A;  1X2R A;  1INW A;  2VVZ A;  1N1V A;  2IAQ A;  2F24 A;  1L7H A;  5FWW A;  2HTR A;  4WA4 A;  4O5T A;  1USX A;  4WA3 A;  2BER A;  3OPZ A;  4FPL A;  4AH4 A;  1Z4X A;  1MS3 A;  3O9K A;  1B9S A;  4FQ4 A;  2SIM A;  1L7G A;  3P5B L;  4NC5 A;  4GEZ A;  4YW5 A;  3PJQ A;  4K1J A;  1INF A;  3K36 A;  4HZX A;  2VSM A;  1RWI A;  4Q1U A;  4XMI A;  3SRE A;  3SIL A;  1Z50 A;  4XHB A;  1ZI0 A;  6NN9 A;  4GNC A;  3TI3 A;  4YW1 A;  4MZE A;  1CRU A;  2HT8 A;  4XOG A;  1IVD A;  1V3E A;  1C5K A;  3G4H A;  2FPB A;  3H72 A;  4O5S A;  4MWL A;  4XJ9 A;  4XJR A;  4G3N A;  4MWV A;  3S8V A;  1W21 A;  3A9G A;  2F27 A;  4D52 A;  4YZ2 A;  2ZZK A;  5D9D A;  1NMA N;  2HT5 A;  2H2U A;  2P4O A;  2VK5 A;  4XMA A;  3TI8 A;  4GN7 A;  3WW9 A;  1SLI A;  3UC1 A;  1Q7F A;  3B69 A;  4L7D A;  1SO7 A;  2VWD A;  4JF7 A;  2VSK A;  1W8O A;  4MWQ A;  2XZK A;  3SOV A;  1W1X A;  2FP8 A;  3CL0 A;  4I00 A;  4B7R A;  1CQ1 A;  4K3Y A;  1OFZ A;  1NNB A;  2ISM A;  1W8N A;  2VW0 A;  4GZP A;  4D8S A;  2QWJ A;  5FNU A;  2QWC A;  1QBI A;  3S94 A;  4MC7 A;  4IN4 A;  2XZI A;  2V91 A;  1F8C A;  4KS2 A;  4M3M A;  3H71 A;  4CPY A;  4GNA A;  2B8H A;  2F13 A;  2XCY A;  2HTQ A;  4K1I A;  3TIB A;  4GZS A;  1N6F A;  4B7N A;  4XJZ A;  4GB1 A;  2CML A;  1VCJ A;  2HU0 A;  3TI4 A;  1INV A;  2IAT A;  1IJQ A;  1E1A A;  1Z4Y A;  4MJU A;  1IVE A;  4Q6K A;  1IUC A;  4PWZ A;  4GZO A;  3K37 A;  2XN4 A;  4L7C A;  3HRP A;  2QWG A;  4YY8 A;  2RKC A;  3H6J A;  4GN9 A;  4HHQ A;  3INB A;  3DAS A;  2W8B B;  2IAX A;  3NO0 A;  3SAN A;  2C4A A;  2GVX A;  4MJV A;  3O9J A;  4FOW A;  4FPE A;  4MWR A;  3Q6K A;  2YDT A;  3Q6T A;  7NN9 A;  5FNT A;  1IVF A;  4GZT A;  3E5Z A;  3ZGD A;  2YA6 A;  2GHS A;  2H2N A;  1CVM A;  3H73 A;  2DG0 A;  2W38 A;  3TC9 A;  3K39 A;  1VCU A;  4K1K A;  5GTQ A;  1MS9 A;  2C4L A;  4FPG A;  4D4U A;  4GNB A;  1MR5 A;  4L7B A;  2A75 A;  1B9V A;  4C1Y B;  1E8T A;  4FP3 A;  4QN3 A;  3A9H A;  4GDJ A;  2ZW9 A;  4IFN X;  4M4N A;  2YA7 A;  3K38 A;  1S1D A;  1V3D A;  1Z4Z A;  4GZX A;  4XIK A;  4B7M A;  3S2K A;  2DYH A;  1KIT A;  2IAP A;  3NN9 A;  4K1H A;  4FPJ A;  4KS5 A;  1SLL A;  1USR A;  2IAR A;  3B7E A;  1NSD A;  4FOQ A;  2F26 A;  1PJX A;  1N1S A;  5H47 A;  3ALX A;  4DG6 A;  3W09 A;  1INX A;  3U0S A;  4IFJ A;  1RWL A;  4QN6 A;  2QWB A;  4MWX A;  5HUG A;  4GJT A;  4QNP A;  4XJA A;  4CPN A;  1IUB A;  4FPC A;  2ZB6 A;  2HTY A;  4MX0 A;  4N1B A;  1NSB A;  2FP9 A;  4HZV A;  5B2C A;  1W20 A;  2BF6 A;  1L7F A;  4KS1 A;  2BAT A;  1NNA A;  1DIM A;  1ZGK A;  4FPK A;  2POO A;  1XOG A;  2BZD A;  5F72 C;  4ZY3 A;  4FOV A;  1V0Z A;  1V3B A;  3A71 A;  2GVU A;  5EO8 A;  3TI5 A;  3O4P A;  4IQK A;  4XJQ A;  2HT7 A;  4YZ4 A;  4YW2 A;  1EUS A;  2SLI A;  3LI3 A;  4AGI A;  3V64 C;  4AHA A;  2W20 A;  1V0E A;  2AEP A;  4MWU A;  4KS3 A;  4M4U A;  1A14 N;  3CKZ A;  2IAU A;  4XJU A;  3WN7 A;  4HZZ A;  5EX7 A;  4XJW A;  4XMB A;  3V65 B;  5GX1 A;  4FPF A;  3WWA A;  5CGJ A;  4HZY A;  2QWK A;  1A4Q A;  4R40 A;  1E8U A;  5GX5 A;  1ING A; 
#chains in the Genus database with same CATH homology
 2VPJ A;  4CHB A;  2ZZK A;  4IQK A;  5FNT A;  4IN4 A;  5FZN A;  5FNQ A;  2DYH A;  4N1B A;  3WDZ A;  4ASC A;  2XN4 A;  5FNR A;  1X2R A;  3ZGD A;  4L7C A;  5FZJ A;  4ZGC A;  4L7D A;  4YY8 A;  1ZGK A;  3ADE A;  3WN7 A;  4IFL X;  2FLU X;  1X2J A;  3II7 A;  5F72 C;  2WOZ A;  4L7B A;  4XMB A;  4ZY3 A;  4IFJ A;  3VNH A;  5CGJ A;  1U6D X;  2Z32 A;  5FNS A;  4CH9 A;  2ZWA A;  3VNG A;  2ZW9 A;  4IFN X;  3ZGC A;  5FNU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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