3CI0J

The crystal structure of the gspk-gspi-gspj complex from enterotoxigenic escherichia coli type 2 secretion system
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
154
structure length
154
Chain Sequence
QKLNLMQQTMSFLTHDLTQMMPRPVRGDQGQREPALLAGAGVLASESEGMRFVRGGVVNPLMRLPRSNLLTVGYRIHDGYLERLAWPLTDAAGSVKPTMQKLIPADSLRLQFYDGTRWQESWSSVQAIPVAVRMTLHSPQWGEIERIWLLRGPQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of the GspK-GspI-GspJ complex from the enterotoxigenic Escherichia coli type 2 secretion system.
pubmed doi rcsb
molecule tags Protein transport
source organism Escherichia coli
molecule keywords Pseudopilin GspI
total genus 29
structure length 154
sequence length 154
ec nomenclature
pdb deposition date 2008-03-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
J PF11612 T2SSJ Type II secretion system (T2SS), protein J
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.70.20 Mainly Beta Ribbon Complement Module; domain 1 gspk-gspi-gspj complex like domains 3ci0J02
3.10.610.10 Alpha Beta Roll Pili subunits GSPII I/J protein-like 3ci0J01
3CI0J
chains in the Genus database with same CATH superfamily
3ERBA 1OJVA 1O9AA 4AYMA 3WSXA 2EC3A 2UWNA 1VVDA 2MCYA 1TPMA 1SS2A 4WJG2 4PO7A 1OJYA 1OK9A 2CG6A 3FGRA 3ZRZA 1H04P 2Y8SA 2IZ3A 4DJZA 1QGBA 4YNXA 2XRDA 1TPGA 5DN4A 4BWCA 5HYTB 4AYEA 5HYPA 1HFIA 3VWOA 1G4GA 2RLQA 2G7IA 3EJHA 2I2LA 2JGXA 1E88A 4LOSA 3CALA 1CKLA 1Z92B 1RLHA 1ZJKA 2JGWA 1FBRA 5HYUB 2RL0A 2Y8RA 4APLA 1E8BA 2YRAA 2XRBA 4KKDA 5FO8C 5DN5A 3FGTA 1HCCA 1MD8A 3RJ3D 2XQWC 1UOTP 4J38B 2O39C 1MD7A 1QUBA 4IGDA 3F6KA 2XWBF 1VVCA 2RKZA 3MQLA 2Y8TA 2QY0A 1OK2A 3O8EB 1HFHA 1GKGA 2KRIA 1GHQB 1SRZA 4FXGG 4C16A 4F4OC 2ERJA 3R62A 3IU3I 4MUCA 2W80A 2CG7A 3KZJA 2RKYA 4A5WB 4JHSA 1PPQA 2V8EA 4AYIA 2B5ID 2YBYA 4LOTA 3K3TA 2KMSA 2JRAA 2CKUA 1G4FA 2ZYCA 3GOVA 1U5MA 3NFPI 3ZD1A 3WSYA 2IZ4A 4B2RA 1OJWA 3CI0J 3INBC 3ZD2A 3L89M 2A55A 3GXEA 4AYDA 3IX0A 4PZ5A 4B2SA 2RLPA 3ZLEA 1GPZA 3M7PA 3OEDC 2XWJI 4CSYA 4N7EA 1H2QP 5I0QB 1GKNA 2BZMA 2LOJA 4K12A 3KXVA 5JPMG 1E5GA 1NWVA 3OXUD 3SW0X 4ZH1D 2X2ZA 4ONTD 3ZLDA 2WIIC 3TVJA 1LY2A 4MSLA 1OK3A 5HZPB 1H2PP 2EHFA 1Q3XA 1C1ZA 4YIZA 1ELVA 1QO6A 3OP8A 2W81A 1OK1A 2MCZA 1TPNA 3NJAA 3T5OA 1H03P
chains in the Genus database with same CATH topology
3CI0I 2GR8A 3CI0J 3CFIA 2GR7A 5BW0B 3CI0K 2LMEA 3EMOA 2RETA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CI0 J; 
#chains in the Genus database with same CATH topology
 3ERB A;  1OJV A;  1O9A A;  4AYM A;  3WSX A;  2EC3 A;  2UWN A;  1VVD A;  2MCY A;  1TPM A;  1SS2 A;  4WJG 2;  4PO7 A;  1OJY A;  1OK9 A;  2CG6 A;  3FGR A;  3ZRZ A;  1H04 P;  2Y8S A;  2IZ3 A;  4DJZ A;  1QGB A;  4YNX A;  2XRD A;  1TPG A;  5DN4 A;  4BWC A;  5HYT B;  4AYE A;  5HYP A;  1HFI A;  3VWO A;  1G4G A;  2RLQ A;  2G7I A;  3EJH A;  2I2L A;  2JGX A;  1E88 A;  4LOS A;  3CAL A;  1CKL A;  1Z92 B;  1RLH A;  1ZJK A;  2JGW A;  1FBR A;  5HYU B;  2RL0 A;  2Y8R A;  4APL A;  1E8B A;  2YRA A;  2XRB A;  4KKD A;  5FO8 C;  5DN5 A;  3FGT A;  1HCC A;  1MD8 A;  3RJ3 D;  2XQW C;  1UOT P;  4J38 B;  2O39 C;  1MD7 A;  1QUB A;  4IGD A;  3F6K A;  2XWB F;  1VVC A;  2RKZ A;  3MQL A;  2Y8T A;  2QY0 A;  1OK2 A;  3O8E B;  1HFH A;  1GKG A;  2KRI A;  1GHQ B;  1SRZ A;  4FXG G;  4C16 A;  4F4O C;  2ERJ A;  3R62 A;  3IU3 I;  4MUC A;  2W80 A;  2CG7 A;  3KZJ A;  2RKY A;  4A5W B;  4JHS A;  1PPQ A;  2V8E A;  4AYI A;  2B5I D;  2YBY A;  4LOT A;  3K3T A;  2KMS A;  2JRA A;  2CKU A;  1G4F A;  2ZYC A;  3GOV A;  1U5M A;  3NFP I;  3ZD1 A;  3WSY A;  2IZ4 A;  4B2R A;  1OJW A;  3CI0 J;  3INB C;  3ZD2 A;  3L89 M;  2A55 A;  3GXE A;  4AYD A;  3IX0 A;  4PZ5 A;  4B2S A;  2RLP A;  3ZLE A;  1GPZ A;  3M7P A;  3OED C;  2XWJ I;  4CSY A;  4N7E A;  1H2Q P;  5I0Q B;  1GKN A;  2BZM A;  2LOJ A;  4K12 A;  3KXV A;  5JPM G;  1E5G A;  1NWV A;  3OXU D;  3SW0 X;  4ZH1 D;  2X2Z A;  4ONT D;  3ZLD A;  2WII C;  3TVJ A;  1LY2 A;  4MSL A;  1OK3 A;  5HZP B;  1H2P P;  2EHF A;  1Q3X A;  1C1Z A;  4YIZ A;  1ELV A;  1QO6 A;  3OP8 A;  2W81 A;  1OK1 A;  2MCZ A;  1TPN A;  3NJA A;  3T5O A;  1H03 P; 
#chains in the Genus database with same CATH homology
 3CI0 I;  2GR8 A;  3CI0 J;  3CFI A;  2GR7 A;  5BW0 B;  3CI0 K;  2LME A;  3EMO A;  2RET A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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