3FTO | Genus

Total Genus 168

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	168
sequence length	559
structure length	559
Chain Sequence	NFDVAYQNPDKAIKGGNLKVAYQSDSPMKAQWLSGLSNDATFATMSGPGGGQDGLFFTDSGFKFIKGGAADVALDKESKTATITLRKDLKWSDGSEVTAKDYEFTYETIANPAYGSDRWTDSLANIVGLSDYHTGKAKTISGITFPDGENGKVIKVQFKEMKPGMTQSGNGYFLETVAPYQYLKDVAPKDLASSPKTTTKPLVTGPFKPENVVAGESIKYVPNPYYWGEKPKLNSITYEVVSTAKSVAALSSSKYDIINGMVSSQYKQVKNLKGYKVLGQQAMYISLMYYNLGHYDAKNSINVQDRKTPLQDQNVRQAIGYARNVAEVDNKFSNGLSTPANSLIPPIFKQFTSSSVKGYEKQDLDKANKLLDEDGWKLNKSTGYREKDGKELSLVYAARVGDANAETIAQNYIQQWKKIGVKVSLYNGKLMEFNSWVDHMTTPPGANDWDITDGSWSLASEPSQQDLFSAAAPYNFGHFNDSEITKDLNDIDSAKSENPTYRKAAFVKYQEDMNKKAYVIPTNFMLNYTPVNKRVVGMTLDYGAMNTWSEIGVSSAKLA

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Peptide binding protein
source organism	Lactococcus lactis subsp. cremoris
publication title	Selenomethionine incorporation in proteins expressed in Lactococcus lactis. pubmed doi rcsb
molecule keywords	Oligopeptide-binding protein oppA
total genus	168
structure length	559
sequence length	559
ec nomenclature
pdb deposition date	2009-01-13

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00496	SBP_bac_5	Bacterial extracellular solute-binding proteins, family 5 Middle

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.10.105.10	Alpha Beta	Roll	Dipeptide-binding Protein; domain 3	Dipeptide-binding Protein; Domain 3	3ftoA02

3M8UA 1B3GA 1DPEA 1UQWA 4TOZA 1B51A 1B46A 3MVYA 1B5IA 4DCYA 5ISUA 1B52A 2O7IA 1JEUA 1ZLQA 1B40A 1JEVA 4OFLA 3RQTA 3MVWA 1QKAA 3MVXA 4OETA 3DRFA 1B5HA 2WOLA 4ONYA 4DCXA 4ZEIA 4ZEDA 4GF8A 4I8CA 4OFJA 4XKNA 3DRGA 1OLAA 4OEVA 4QFNA 3O6PA 1B05A 4ZECA 5KZTA 3CHGA 2WOPA 4QFKA 3TCGA 4FAJA 4PFWA 5ICQA 3TCFA 3DRJA 4XKQA 2GRVA 4GL8A 3TPAA 1ZTYA 3MW0A 3DRKA 3RY3A 4PFUA 2D5WA 3DRHA 1QKBA 1ZU0A 3O9PA 1B3HA 1OLCA 3LVUA 4ZEKA 3QIMA 2Z23A 1B5JA 3TCHA 3RYAA 3I5OA 5HM4B 4QFLA 1B0HA 4OESA 2RKMA 4QFOA 1DPPA 1XOCA 1VR5A 1RKMA 3MZBA 1B4HA 2NOOA 3MZ9A 2B4LA 4RA1A 1B1HA 2OLBA 3DRIA 3FTOA 4ZE8A 5F1QA 3T66A 1B3FA 4XKRA 2B4MA 4OERA 1UIUA 3MVZA 4I9DA 1B7HA 1B6HA 4ZEBA 4PFYA 4PFTA 4GFRA 1B3LA 3RYBA 2WOKA 4OFOA 4QFPA 4ZE9A 1B4ZA 4JSOA 1B9JA 1B32A 1JETA 1B58A 4OEUA 1B2HA 4XKPA 4WEDA 5L8DA 4JSDA 1UIVA 3ZS6A 3PAMA 3E3KA 3DP8A
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 3M8U A;  1B3G A;  1DPE A;  1UQW A;  4TOZ A;  1B51 A;  1B46 A;  3MVY A;  1B5I A;  4DCY A;  5ISU A;  1B52 A;  2O7I A;  1JEU A;  1ZLQ A;  1B40 A;  1JEV A;  4OFL A;  3RQT A;  3MVW A;  1QKA A;  3MVX A;  4OET A;  3DRF A;  1B5H A;  2WOL A;  4ONY A;  4DCX A;  4ZEI A;  4ZED A;  4GF8 A;  4I8C A;  4OFJ A;  4XKN A;  3DRG A;  1OLA A;  4OEV A;  4QFN A;  3O6P A;  1B05 A;  4ZEC A;  5KZT A;  3CHG A;  2WOP A;  4QFK A;  3TCG A;  4FAJ A;  4PFW A;  5ICQ A;  3TCF A;  3DRJ A;  4XKQ A;  2GRV A;  4GL8 A;  3TPA A;  1ZTY A;  3MW0 A;  3DRK A;  3RY3 A;  4PFU A;  2D5W A;  3DRH A;  1QKB A;  1ZU0 A;  3O9P A;  1B3H A;  1OLC A;  3LVU A;  4ZEK A;  3QIM A;  2Z23 A;  1B5J A;  3TCH A;  3RYA A;  3I5O A;  5HM4 B;  4QFL A;  1B0H A;  4OES A;  2RKM A;  4QFO A;  1DPP A;  1XOC A;  1VR5 A;  1RKM A;  3MZB A;  1B4H A;  2NOO A;  3MZ9 A;  2B4L A;  4RA1 A;  1B1H A;  2OLB A;  3DRI A;  3FTO A;  4ZE8 A;  5F1Q A;  3T66 A;  1B3F A;  4XKR A;  2B4M A;  4OER A;  1UIU A;  3MVZ A;  4I9D A;  1B7H A;  1B6H A;  4ZEB A;  4PFY A;  4PFT A;  4GFR A;  1B3L A;  3RYB A;  2WOK A;  4OFO A;  4QFP A;  4ZE9 A;  1B4Z A;  4JSO A;  1B9J A;  1B32 A;  1JET A;  1B58 A;  4OEU A;  1B2H A;  4XKP A;  4WED A;  5L8D A;  4JSD A;  1UIV A;  3ZS6 A;  3PAM A;  3E3K A;  3DP8 A; 
#chains in the Genus database with same CATH topology
 3M8U A;  1B3G A;  1DPE A;  1UQW A;  4TOZ A;  1B51 A;  1B46 A;  3MVY A;  1B5I A;  4DCY A;  5ISU A;  1B52 A;  2O7I A;  1JEU A;  1ZLQ A;  1B40 A;  1JEV A;  4OFL A;  3RQT A;  3MVW A;  1QKA A;  3MVX A;  4OET A;  3DRF A;  1B5H A;  2WOL A;  4ONY A;  4DCX A;  4ZEI A;  4ZED A;  4GF8 A;  4I8C A;  4OFJ A;  4XKN A;  3DRG A;  1OLA A;  4OEV A;  4QFN A;  3O6P A;  1B05 A;  4ZEC A;  5KZT A;  3CHG A;  2WOP A;  4QFK A;  3TCG A;  4FAJ A;  4PFW A;  5ICQ A;  3TCF A;  3DRJ A;  4XKQ A;  2GRV A;  4GL8 A;  3TPA A;  1ZTY A;  3MW0 A;  3DRK A;  3RY3 A;  4PFU A;  2D5W A;  3DRH A;  1QKB A;  1ZU0 A;  3O9P A;  1B3H A;  1OLC A;  3LVU A;  4ZEK A;  3QIM A;  2Z23 A;  1B5J A;  3TCH A;  3RYA A;  3I5O A;  5HM4 B;  4QFL A;  1B0H A;  4OES A;  2RKM A;  4QFO A;  1DPP A;  1XOC A;  1VR5 A;  1RKM A;  3MZB A;  1B4H A;  2NOO A;  3MZ9 A;  2B4L A;  4RA1 A;  1B1H A;  2OLB A;  3DRI A;  3FTO A;  4ZE8 A;  5F1Q A;  3T66 A;  1B3F A;  4XKR A;  2B4M A;  4OER A;  1UIU A;  3MVZ A;  4I9D A;  1B7H A;  1B6H A;  4ZEB A;  4PFY A;  4PFT A;  4GFR A;  1B3L A;  3RYB A;  2WOK A;  4OFO A;  4QFP A;  4ZE9 A;  1B4Z A;  4JSO A;  1B9J A;  1B32 A;  1JET A;  1B58 A;  4OEU A;  1B2H A;  4XKP A;  4WED A;  5L8D A;  4JSD A;  1UIV A;  3ZS6 A;  3PAM A;  3E3K A;  3DP8 A; 
#chains in the Genus database with same CATH homology
 3M8U A;  1B3G A;  1DPE A;  1UQW A;  4TOZ A;  1B51 A;  1B46 A;  3MVY A;  1B5I A;  4DCY A;  5ISU A;  1B52 A;  2O7I A;  1JEU A;  1ZLQ A;  1B40 A;  1JEV A;  4OFL A;  3RQT A;  3MVW A;  1QKA A;  3MVX A;  4OET A;  3DRF A;  1B5H A;  2WOL A;  4ONY A;  4DCX A;  4ZEI A;  4ZED A;  4GF8 A;  4I8C A;  4OFJ A;  4XKN A;  3DRG A;  1OLA A;  4OEV A;  4QFN A;  3O6P A;  1B05 A;  4ZEC A;  5KZT A;  3CHG A;  2WOP A;  4QFK A;  3TCG A;  4FAJ A;  4PFW A;  5ICQ A;  3TCF A;  3DRJ A;  4XKQ A;  2GRV A;  4GL8 A;  3TPA A;  1ZTY A;  3MW0 A;  3DRK A;  3RY3 A;  4PFU A;  2D5W A;  3DRH A;  1QKB A;  1ZU0 A;  3O9P A;  1B3H A;  1OLC A;  3LVU A;  4ZEK A;  3QIM A;  2Z23 A;  1B5J A;  3TCH A;  3RYA A;  3I5O A;  5HM4 B;  4QFL A;  1B0H A;  4OES A;  2RKM A;  4QFO A;  1DPP A;  1XOC A;  1VR5 A;  1RKM A;  3MZB A;  1B4H A;  2NOO A;  3MZ9 A;  2B4L A;  4RA1 A;  1B1H A;  2OLB A;  3DRI A;  3FTO A;  4ZE8 A;  5F1Q A;  3T66 A;  1B3F A;  4XKR A;  2B4M A;  4OER A;  1UIU A;  3MVZ A;  4I9D A;  1B7H A;  1B6H A;  4ZEB A;  4PFY A;  4PFT A;  4GFR A;  1B3L A;  3RYB A;  2WOK A;  4OFO A;  4QFP A;  4ZE9 A;  1B4Z A;  4JSO A;  1B9J A;  1B32 A;  1JET A;  1B58 A;  4OEU A;  1B2H A;  4XKP A;  4WED A;  5L8D A;  4JSD A;  1UIV A;  3ZS6 A;  3PAM A;  3E3K A;  3DP8 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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3FTOA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations