3L6VA

Crystal structure of the xanthomonas campestris gyrase a c-terminal domain
Total Genus 74

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
74
sequence length
348
structure length
313
Chain Sequence
MDLIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQAVERLDASL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Isomerase
source organism Xanthomonas campestris pv. campestris
publication title Twisting of the DNA binding surface by a beta-strand-bearing proline modulates DNA gyrase activity
rcsb
molecule keywords DNA gyrase subunit A
total genus 74
structure length 313
sequence length 348
chains with identical sequence B
ec nomenclature ec 5.99.1.3: Transferred entry: 5.6.2.3.
pdb deposition date 2009-12-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03989 DNA_gyraseA_C DNA gyrase C-terminal domain, beta-propeller
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.120.10.90 Mainly Beta 6 Propeller Neuraminidase DNA gyrase/topoisomerase IV, subunit A, C-terminal 3l6vA00
3UC1A 4G3NA 1ZI0A 3L6VA 3NO0A 1SUUA 1WP5A
chains in the Genus database with same CATH superfamily
1NNBA 1INXA 4JF7A 1NSBA 4GJTA 1W20A 1E8VA 4XJWA 1MS1A 1W8NA 1MWEA 2VW2A 3OPZA 1L7HA 2IAPA 3JU4A 5GX5A 3FVZA 5FNQA 1Z4ZA 4HHOA 4IFNX 2XZIA 1V0ZA 4H53A 5EO8A 2H2NA 2VWDA 1A4GA 4CPYA 3G4EA 1V2IA 1RWIA 3GVKA 1EUUA 4FP3A 3A9GA 3CL0A 5FNUA 4B7NA 2XZJA 4MWUA 4Q1UA 2F25A 1MS5A 7NN9A 2FPBA 4GNCA 4FZHA 3DASA 1CVMA 1ZGKA 5FNTA 1DIMA 1SO7A 1Z4VA 2BATA 4Q6KA 3TI8A 1X2RA 3H6JA 4IMBA 2QWJA 2IAXA 3W09A 3V65B 2QWKA 2W5NA 4D4UA 4QN6A 3GVLA 4L7BA 3SILA 4YW1A 4XHXA 2HTQA 4IN4A 3VNGA 3Q6PA 1S0IA 1WP5A 5FZNA 1CQ1A 2ZZKA 3WN7A 5JYYA 1DILA 2W38A 4XHBA 4B7QA 4O5SA 3HLHA 4L7CA 4FOYA 3HLIA 4ASCA 1MS8A 3NO0A 4HZXA 1CRUA 2IASA 4M4NA 4J9TA 2HT5A 1NSCA 4D52B 1L7GA 2DSOA 1QBIA 4HZWA 1NMBN 1B9VA 3TIBA 4K3YA 3S2KA 1EUSA 3LI4A 2GVVA 4N1BA 4B7MA 2F11A 4FPHA 1NCDN 1Z4XA 4FPEA 3TI6A 2VSMA 3K39A 4GDIA 1IVCA 1N1VA 1W0OA 4MWQA 2QWAA 3Q6KA 2F28A 1S0JA 2VW0A 4AGIA 4X49A 4D52A 2DG0A 3D12A 1W1XA 4MWVA 4YZ2A 1EURA 2BERA 4G3NA 4I00A 1VCJA 2YA7A 4MZEA 4FPKA 5B2DA 4ZLRA 4XJRA 5CGJA 2IAOA 5HUNA 3SREA 3T1EA 2JKBA 2ZWAA 1A14N 2FPCA 2HQSA 4WEGA 3B69A 4MWXA 4AH4A 3AMSA 4K1JA 2GVWA 1NSDA 4WA4A 3WWAA 5M1ZA 1B9TA 3GVJA 3O4PA 2GVUA 2SIMA 3K3AA 4GNBA 1XOEA 1IJQA 2HTYA 3KGGA 3SOBB 3NSSA 2IAWA 2POOA 4MWRA 5HUMA 5EX7A 1OFZA 4FQ4A 4FVKA 4YW4A 2GHSA 2QWDA 3UC1A 1IUBA 2A75A 3H72A 2W20A 4GZSA 2FP8A 3WW9A 2YDPA 2P4OA 4FPFA 3TICA 1V04A 4YZ5A 2WOZA 2XN4A 4FPLA 4YW5A 4HZVA 2OJHA 5GX1A 1V0FA 4FOQA 3INBA 3L6VA 1W8OA 4AGTA 5GX4A 1NMAN 2AGSA 4YW2A 3TI4A 1MZ6A 2YA4A 1NCAN 1C9UA 5HUGA 2YDTA 1SLLA 4SLIA 3AMRA 3ZGDA 1EUTA 2HTVA 1IUCA 1Q7FA 4XIKA 2VSKA 3O9KA 1XOGA 5D9DA 1W21A 5HX0A 2BZDA 3SLIA 1K32A 1WCSA 5F9TA 1N1YA 2B8HA 4CPMA 4K1IA 5FWWA 3SOQA 2VK6A 3H73A 2HU0A 2SLIA 3K37A 3IAXA 3TI5A 1N6EA 4XOGA 3K38A 3SOVA 4KS4A 1IVFA 3ZGCA 4QN4A 1INHA 2IVZA 2X9MA 3TIAA 4X47A 2C4LA 4X6KA 4GZPA 1F8EA 3VNHA 4GN7A 4QN3A 4MWWA 4NN9A 1MS0A 2FP9A 3PJQA 3CYEA 2SILA 1X2JA 4XILA 1V3EA 1F8CA 4GZXA 4KS1A 4L7DA 2F10A 3LI5A 4UOUA 4FPOB 3II7A 5NN9A 4AHAA 4CH9A 4FJ6A 1E1AA 4CPNA 1RWLA 3V64C 5GX2A 4ZY3A 4CPLA 4GEZA 2Z32A 3TI3A 3S8ZA 1PJXA 4MJUA 2F13A 1S1DA 3ALWA 4R40A 2RKCA 3H71A 1NCBN 1NNAA 4KS3A 1POOA 1V3CA 1Z4YA 2IAUA 1QLGA 3A72A 1S18A 4IQKA 1H6LA 4XJQA 1V3DA 2W5OA 4FOVA 3S8VA 1IVGA 5H47A 2F12A 2DYHA 1USXA 5FZJA 1MZ5A 4O5TA 2DG1A 4UF7A 3U0SA 4XJ9A 1L7FA 4MJVA 2QE8A 4HIZA 4GZOA 4GDJA 4MWYA 2ISMA 2QWHA 4FP2A 4XJ8A 4KS5A 4MC7A 2F26A 2VAQA 4XMAA 1U6DX 2F0ZA 1INYA 4D8SA 1A4QA 1SNTA 5EO7A 2VW1A 1V0EA 5FNSA 1INGA 2HT7A 3I1CA 4GN9A 4HHQA 4IFJA 3Q6TA 1KITA 2V91A 1CRZA 1INVA 4GZWA 1B9SA 4IYGA 3E5ZA 2HTWA 2QWBA 4CPOA 5GTQA 5HUKA 4YZ4A 4FOWA 3D11A 2QWFA 2F29A 2VPJA 4GB1A 1MS3A 1N1SA 2GVXA 4MX0A 1NN2A 4XMIA 1Z50A 4BBWA 4CSDA 3SRGA 5F72C 1E8UA 2BF6A 4B7JA 5B2CA 2ZB5A 4M4UA 4XJUA 3KYAA 1F8DA 1V3BA 2YA8A 1W0PA 2CMLA 2FHRA 1E8TA 1MS4A 2HTRA 4XIOA 5D9BA 4K1HA 4C1YB 2AEPA 1MS9A 2VK7A 4NC5A 4DGRA 1Z4WA 4MWLA 5GX3A 1NMCA 4XYXA 4IFLX 3TC9A 3CL2A 2YA5A 2HTUA 2QWEA 4FPCA 2ZW9A 4WA5A 4K1KA 2C4AA 4X4AA 1NCCN 1USRA 4C1YA 3K36A 3V1SA 4FPGA 4A0PA 4QN5A 1NNCA 4WA3A 4PWZA 4XJAA 3ALXA 4QNPA 1N6DA 4MZAA 1SLIA 1C5KA 4FPYA 3BYCA 2F24A 1N6FA 2HU4A 3P5BL 3O9JA 5FNRA 4YY8A 4HW6A 2G8SA 1IVBA 3S94A 1INWA 4WEFA 2QWIA 4HZZA 2XZKA 4XE9A 4D52C 1INFA 1MR5A 1N1TA 3LI3A 1IVDA 2F27A 2AEQA 4FPJA 4MWJA 4CPZA 2H2UA 3CKZA 3WDZA 2FLUX 4GZQA 4DG6A 3A71A 4NCSA 3BEQA 3G4HA 3FW0A 4B7RA 4XJZA 2XCYA 3A9HA 4XMBA 4GN8A 2HT8A 3SANA 2W8BB 2IARA 4YZ1A 2IATA 3NN9A 4M3MA 4JMLA 2AH2A 1N7DA 3ADEA 1BJIA 4M4VA 4QN7A 4ZGCA 2QWCA 3DR2A 1ZI0A 2IAVA 4KS2A 3B7EA 2ZB6A 5D9CA 1NPEA 3SALA 1IVEA 4H52A 2IAQA 3HRPA 1WCQA 2VVZA 1F8BA 4HZYA 4CHBA 6NN9A 2VK5A 4GZTA 1VCUA 4GNAA 4YW3A 2W8BA 2YA6A 4YZ3A 2QWGA 1SUUA
chains in the Genus database with same CATH topology
3UC1A 4G3NA 1ZI0A 3L6VA 3NO0A 1SUUA 1WP5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3UC1 A;  4G3N A;  1ZI0 A;  3L6V A;  3NO0 A;  1SUU A;  1WP5 A; 
#chains in the Genus database with same CATH topology
 1NNB A;  1INX A;  4JF7 A;  1NSB A;  4GJT A;  1W20 A;  1E8V A;  4XJW A;  1MS1 A;  1W8N A;  1MWE A;  2VW2 A;  3OPZ A;  1L7H A;  2IAP A;  3JU4 A;  5GX5 A;  3FVZ A;  5FNQ A;  1Z4Z A;  4HHO A;  4IFN X;  2XZI A;  1V0Z A;  4H53 A;  5EO8 A;  2H2N A;  2VWD A;  1A4G A;  4CPY A;  3G4E A;  1V2I A;  1RWI A;  3GVK A;  1EUU A;  4FP3 A;  3A9G A;  3CL0 A;  5FNU A;  4B7N A;  2XZJ A;  4MWU A;  4Q1U A;  2F25 A;  1MS5 A;  7NN9 A;  2FPB A;  4GNC A;  4FZH A;  3DAS A;  1CVM A;  1ZGK A;  5FNT A;  1DIM A;  1SO7 A;  1Z4V A;  2BAT A;  4Q6K A;  3TI8 A;  1X2R A;  3H6J A;  4IMB A;  2QWJ A;  2IAX A;  3W09 A;  3V65 B;  2QWK A;  2W5N A;  4D4U A;  4QN6 A;  3GVL A;  4L7B A;  3SIL A;  4YW1 A;  4XHX A;  2HTQ A;  4IN4 A;  3VNG A;  3Q6P A;  1S0I A;  1WP5 A;  5FZN A;  1CQ1 A;  2ZZK A;  3WN7 A;  5JYY A;  1DIL A;  2W38 A;  4XHB A;  4B7Q A;  4O5S A;  3HLH A;  4L7C A;  4FOY A;  3HLI A;  4ASC A;  1MS8 A;  3NO0 A;  4HZX A;  1CRU A;  2IAS A;  4M4N A;  4J9T A;  2HT5 A;  1NSC A;  4D52 B;  1L7G A;  2DSO A;  1QBI A;  4HZW A;  1NMB N;  1B9V A;  3TIB A;  4K3Y A;  3S2K A;  1EUS A;  3LI4 A;  2GVV A;  4N1B A;  4B7M A;  2F11 A;  4FPH A;  1NCD N;  1Z4X A;  4FPE A;  3TI6 A;  2VSM A;  3K39 A;  4GDI A;  1IVC A;  1N1V A;  1W0O A;  4MWQ A;  2QWA A;  3Q6K A;  2F28 A;  1S0J A;  2VW0 A;  4AGI A;  4X49 A;  4D52 A;  2DG0 A;  3D12 A;  1W1X A;  4MWV A;  4YZ2 A;  1EUR A;  2BER A;  4G3N A;  4I00 A;  1VCJ A;  2YA7 A;  4MZE A;  4FPK A;  5B2D A;  4ZLR A;  4XJR A;  5CGJ A;  2IAO A;  5HUN A;  3SRE A;  3T1E A;  2JKB A;  2ZWA A;  1A14 N;  2FPC A;  2HQS A;  4WEG A;  3B69 A;  4MWX A;  4AH4 A;  3AMS A;  4K1J A;  2GVW A;  1NSD A;  4WA4 A;  3WWA A;  5M1Z A;  1B9T A;  3GVJ A;  3O4P A;  2GVU A;  2SIM A;  3K3A A;  4GNB A;  1XOE A;  1IJQ A;  2HTY A;  3KGG A;  3SOB B;  3NSS A;  2IAW A;  2POO A;  4MWR A;  5HUM A;  5EX7 A;  1OFZ A;  4FQ4 A;  4FVK A;  4YW4 A;  2GHS A;  2QWD A;  3UC1 A;  1IUB A;  2A75 A;  3H72 A;  2W20 A;  4GZS A;  2FP8 A;  3WW9 A;  2YDP A;  2P4O A;  4FPF A;  3TIC A;  1V04 A;  4YZ5 A;  2WOZ A;  2XN4 A;  4FPL A;  4YW5 A;  4HZV A;  2OJH A;  5GX1 A;  1V0F A;  4FOQ A;  3INB A;  3L6V A;  1W8O A;  4AGT A;  5GX4 A;  1NMA N;  2AGS A;  4YW2 A;  3TI4 A;  1MZ6 A;  2YA4 A;  1NCA N;  1C9U A;  5HUG A;  2YDT A;  1SLL A;  4SLI A;  3AMR A;  3ZGD A;  1EUT A;  2HTV A;  1IUC A;  1Q7F A;  4XIK A;  2VSK A;  3O9K A;  1XOG A;  5D9D A;  1W21 A;  5HX0 A;  2BZD A;  3SLI A;  1K32 A;  1WCS A;  5F9T A;  1N1Y A;  2B8H A;  4CPM A;  4K1I A;  5FWW A;  3SOQ A;  2VK6 A;  3H73 A;  2HU0 A;  2SLI A;  3K37 A;  3IAX A;  3TI5 A;  1N6E A;  4XOG A;  3K38 A;  3SOV A;  4KS4 A;  1IVF A;  3ZGC A;  4QN4 A;  1INH A;  2IVZ A;  2X9M A;  3TIA A;  4X47 A;  2C4L A;  4X6K A;  4GZP A;  1F8E A;  3VNH A;  4GN7 A;  4QN3 A;  4MWW A;  4NN9 A;  1MS0 A;  2FP9 A;  3PJQ A;  3CYE A;  2SIL A;  1X2J A;  4XIL A;  1V3E A;  1F8C A;  4GZX A;  4KS1 A;  4L7D A;  2F10 A;  3LI5 A;  4UOU A;  4FPO B;  3II7 A;  5NN9 A;  4AHA A;  4CH9 A;  4FJ6 A;  1E1A A;  4CPN A;  1RWL A;  3V64 C;  5GX2 A;  4ZY3 A;  4CPL A;  4GEZ A;  2Z32 A;  3TI3 A;  3S8Z A;  1PJX A;  4MJU A;  2F13 A;  1S1D A;  3ALW A;  4R40 A;  2RKC A;  3H71 A;  1NCB N;  1NNA A;  4KS3 A;  1POO A;  1V3C A;  1Z4Y A;  2IAU A;  1QLG A;  3A72 A;  1S18 A;  4IQK A;  1H6L A;  4XJQ A;  1V3D A;  2W5O A;  4FOV A;  3S8V A;  1IVG A;  5H47 A;  2F12 A;  2DYH A;  1USX A;  5FZJ A;  1MZ5 A;  4O5T A;  2DG1 A;  4UF7 A;  3U0S A;  4XJ9 A;  1L7F A;  4MJV A;  2QE8 A;  4HIZ A;  4GZO A;  4GDJ A;  4MWY A;  2ISM A;  2QWH A;  4FP2 A;  4XJ8 A;  4KS5 A;  4MC7 A;  2F26 A;  2VAQ A;  4XMA A;  1U6D X;  2F0Z A;  1INY A;  4D8S A;  1A4Q A;  1SNT A;  5EO7 A;  2VW1 A;  1V0E A;  5FNS A;  1ING A;  2HT7 A;  3I1C A;  4GN9 A;  4HHQ A;  4IFJ A;  3Q6T A;  1KIT A;  2V91 A;  1CRZ A;  1INV A;  4GZW A;  1B9S A;  4IYG A;  3E5Z A;  2HTW A;  2QWB A;  4CPO A;  5GTQ A;  5HUK A;  4YZ4 A;  4FOW A;  3D11 A;  2QWF A;  2F29 A;  2VPJ A;  4GB1 A;  1MS3 A;  1N1S A;  2GVX A;  4MX0 A;  1NN2 A;  4XMI A;  1Z50 A;  4BBW A;  4CSD A;  3SRG A;  5F72 C;  1E8U A;  2BF6 A;  4B7J A;  5B2C A;  2ZB5 A;  4M4U A;  4XJU A;  3KYA A;  1F8D A;  1V3B A;  2YA8 A;  1W0P A;  2CML A;  2FHR A;  1E8T A;  1MS4 A;  2HTR A;  4XIO A;  5D9B A;  4K1H A;  4C1Y B;  2AEP A;  1MS9 A;  2VK7 A;  4NC5 A;  4DGR A;  1Z4W A;  4MWL A;  5GX3 A;  1NMC A;  4XYX A;  4IFL X;  3TC9 A;  3CL2 A;  2YA5 A;  2HTU A;  2QWE A;  4FPC A;  2ZW9 A;  4WA5 A;  4K1K A;  2C4A A;  4X4A A;  1NCC N;  1USR A;  4C1Y A;  3K36 A;  3V1S A;  4FPG A;  4A0P A;  4QN5 A;  1NNC A;  4WA3 A;  4PWZ A;  4XJA A;  3ALX A;  4QNP A;  1N6D A;  4MZA A;  1SLI A;  1C5K A;  4FPY A;  3BYC A;  2F24 A;  1N6F A;  2HU4 A;  3P5B L;  3O9J A;  5FNR A;  4YY8 A;  4HW6 A;  2G8S A;  1IVB A;  3S94 A;  1INW A;  4WEF A;  2QWI A;  4HZZ A;  2XZK A;  4XE9 A;  4D52 C;  1INF A;  1MR5 A;  1N1T A;  3LI3 A;  1IVD A;  2F27 A;  2AEQ A;  4FPJ A;  4MWJ A;  4CPZ A;  2H2U A;  3CKZ A;  3WDZ A;  2FLU X;  4GZQ A;  4DG6 A;  3A71 A;  4NCS A;  3BEQ A;  3G4H A;  3FW0 A;  4B7R A;  4XJZ A;  2XCY A;  3A9H A;  4XMB A;  4GN8 A;  2HT8 A;  3SAN A;  2W8B B;  2IAR A;  4YZ1 A;  2IAT A;  3NN9 A;  4M3M A;  4JML A;  2AH2 A;  1N7D A;  3ADE A;  1BJI A;  4M4V A;  4QN7 A;  4ZGC A;  2QWC A;  3DR2 A;  1ZI0 A;  2IAV A;  4KS2 A;  3B7E A;  2ZB6 A;  5D9C A;  1NPE A;  3SAL A;  1IVE A;  4H52 A;  2IAQ A;  3HRP A;  1WCQ A;  2VVZ A;  1F8B A;  4HZY A;  4CHB A;  6NN9 A;  2VK5 A;  4GZT A;  1VCU A;  4GNA A;  4YW3 A;  2W8B A;  2YA6 A;  4YZ3 A;  2QWG A;  1SUU A; 
#chains in the Genus database with same CATH homology
 3UC1 A;  4G3N A;  1ZI0 A;  3L6V A;  3NO0 A;  1SUU A;  1WP5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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