3L6VA

Crystal structure of the xanthomonas campestris gyrase a c-terminal domain
Total Genus 74
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
74
sequence length
348
structure length
313
Chain Sequence
MDLIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQAVERLDASL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Twisting of the DNA binding surface by a beta-strand-bearing proline modulates DNA gyrase activity
rcsb
molecule tags Isomerase
source organism Xanthomonas campestris pv. campestris
molecule keywords DNA gyrase subunit A
total genus 74
structure length 313
sequence length 348
chains with identical sequence B
ec nomenclature ec 5.99.1.3: Transferred entry: 5.6.2.3.
pdb deposition date 2009-12-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03989 DNA_gyraseA_C DNA gyrase C-terminal domain, beta-propeller
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.120.10.90 Mainly Beta 6 Propeller Neuraminidase DNA gyrase/topoisomerase IV, subunit A, C-terminal 3l6vA00
1WP5A 1SUUA 3L6VA 4G3NA 3NO0A 1ZI0A 3UC1A
chains in the Genus database with same CATH superfamily
2IAOA 4UF7A 2G8SA 1MWEA 1A4QA 2XZKA 5FNRA 3NN9A 1VCUA 3TICA 1C9UA 4FPKA 2ZW9A 2VK5A 2HQSA 4AHAA 4XIOA 3A72A 2AH2A 3B7EA 4XHBA 4XIKA 2C4LA 2CMLA 4G3NA 5GTQA 4MWQA 4M4UA 3DASA 3A9HA 3H6JA 1INYA 2QWGA 4MWJA 1NCBN 4CSDA 1EUSA 3AMSA 2VK7A 4GDIA 4O5TA 4YW1A 4YW4A 1F8DA 4YW3A 2GVUA 1S18A 4MWRA 5GX5A 4FPLA 2DG0A 4GB1A 2ZB5A 3O9JA 3OPZA 4YY8A 4ZGCA 4FOYA 3FVZA 2AEQA 3A71A 5HX0A 5FNUA 4XE9A 2XZIA 2WOZA 3GVLA 1NCAN 5FZJA 1W8NA 4XJQA 4XOGA 2VW2A 4GZQA 5JYYA 1X2RA 1CRZA 3TI8A 3E5ZA 4B7QA 2X9MA 4KS5A 3K38A 3SILA 1NPEA 4M4NA 2JKBA 1V2IA 3VNHA 4X6KA 2Z32A 4WA5A 3SRGA 3Q6TA 2W38A 3TC9A 1NMAN 3IAXA 1IVDA 4FOVA 2IASA 4CPLA 4O5SA 3TI5A 1N1SA 1N1YA 3KYAA 4FPGA 3ZGDA 4FPEA 4DGRA 2AGSA 3CL0A 2VW1A 4XJ8A 5D9DA 2VW0A 1SLIA 3II7A 1MS1A 2FP8A 4GNAA 4GZWA 1MZ5A 4GZPA 1RWIA 3WN7A 2FLUX 4XMIA 4WA3A 1SLLA 4GEZA 3WWAA 1ZI0A 2C4AA 4IMBA 1Z4VA 2HTYA 4MZAA 2QWIA 1N1TA 1U6DX 5B2DA 4Q1UA 1V04A 1USXA 4NN9A 1INHA 2F0ZA 5FWWA 1B9TA 1DILA 4FPFA 1W21A 5B2CA 1F8BA 1INGA 1QLGA 3U0SA 2W20A 4HZXA 4HW6A 4C1YB 1MS4A 2ZZKA 2F13A 4MWVA 4J9TA 3LI3A 3H71A 2IAWA 4WA4A 4XJ9A 1MS8A 3SREA 4HHQA 2HTQA 2F26A 4QN6A 4IQKA 3NSSA 2XN4A 3CYEA 2QWCA 2VK6A 3G4HA 5NN9A 1KITA 1S0JA 1NN2A 3Q6PA 4FPJA 4M3MA 3SALA 4B7NA 2QWEA 4KS3A 4FZHA 6NN9A 3SOQA 1IUCA 4MWLA 3BEQA 1IVBA 4GZXA 3HLIA 3S8VA 1RWLA 4QN7A 1V0EA 2YA6A 1N6DA 3K37A 3S94A 4ASCA 4YZ1A 2QWKA 4XMAA 3T1EA 3ADEA 7NN9A 1F8CA 4XHXA 4FPCA 4L7CA 1OFZA 2VAQA 3BYCA 3K39A 2ZWAA 4MZEA 5F9TA 3KGGA 2F12A 4FPOB 4KS4A 4XJUA 1Z4XA 2FPCA 3V65B 1W0PA 5GX1A 1MS0A 2F25A 3ALXA 3H73A 1VCJA 1H6LA 1IUBA 2HTWA 3CL2A 4GJTA 3LI4A 1EURA 1WP5A 1Z4YA 2ZB6A 4JF7A 1B9SA 5HUNA 4XJAA 3D11A 2FHRA 2P4OA 5GX3A 4B7JA 3ZGCA 1MS5A 3LI5A 4HZYA 1NMCA 1E8VA 1A4GA 4GZSA 3G4EA 4YZ5A 4GNBA 1QBIA 3K36A 2GVVA 1W20A 4QN3A 2W5OA 2BATA 1X2JA 3L6VA 4MWUA 2H2UA 1IVCA 4QNPA 5HUKA 3DR2A 3GVKA 1E8UA 4QN4A 2B8HA 1MZ6A 2IATA 3NO0A 5F72C 3PJQA 1IVFA 3W09A 2BERA 2F11A 4DG6A 3SANA 3I1CA 3WDZA 4MWWA 4Q6KA 4A0PA 2SILA 4FOWA 4CPNA 1BJIA 1EUTA 2HT7A 4HZVA 4HIZA 2QE8A 1B9VA 1S0IA 5GX4A 4WEGA 3P5BL 1Q7FA 4K1JA 4QN5A 2F28A 1V0ZA 4R40A 4GZOA 1V3CA 4GNCA 4FOQA 2F10A 3TIBA 2HT5A 2FP9A 1V0FA 2IAQA 2F29A 5FNSA 2VSMA 5GX2A 4CPMA 4FQ4A 2YDTA 4UOUA 2QWAA 2IARA 3HRPA 2W8BA 4D52A 5CGJA 4FPYA 4MX0A 1NNAA 1E1AA 2A75A 2IAXA 4XILA 4YW5A 3TI6A 4YZ2A 1N7DA 5FNQA 1SUUA 4B7MA 1NCCN 1NCDN 3AMRA 4D52C 4HHOA 4MJVA 1INXA 4PWZA 2IVZA 1Z4WA 4L7DA 4BBWA 1IJQA 5EO7A 1V3DA 4IN4A 5D9CA 1PJXA 4K1IA 3TI3A 1POOA 1XOGA 1INFA 3CKZA 4KS2A 4CH9A 2POOA 4FP2A 1F8EA 4MWYA 2F24A 2VPJA 4GDJA 4XJZA 2V91A 4YW2A 1MS9A 1W1XA 4GN9A 4FJ6A 5H47A 3A9GA 4KS1A 3B69A 2VVZA 4H52A 4X49A 4CPYA 3ALWA 2HT8A 3VNGA 2VWDA 1CVMA 2YA4A 4GN7A 3INBA 2YA7A 1MR5A 2H2NA 3UC1A 1L7GA 3JU4A 4SLIA 4IFNX 2QWHA 2QWDA 4HZWA 1E8TA 4MWXA 1N1VA 1N6FA 4MC7A 4K1HA 3Q6KA 4CHBA 2QWBA 4CPZA 1W8OA 1WCQA 1EUUA 4CPOA 1V3EA 3SOVA 4XJWA 4D8SA 1NSCA 2RKCA 4IFJA 5D9BA 4IFLX 4NC5A 2FPBA 4MJUA 3S2KA 4K1KA 2IAUA 1IVEA 1L7HA 1WCSA 2HU0A 2HU4A 4N1BA 4FVKA 4AGTA 1CQ1A 5HUMA 1SNTA 2VSKA 2SLIA 4YZ3A 2QWFA 3WW9A 2HTVA 3SOBB 2IAVA 1IVGA 5EO8A 4X4AA 1Z4ZA 1K32A 4M4VA 2OJHA 2BZDA 2GVWA 2QWJA 2SIMA 1Z50A 4L7BA 2IAPA 1L7FA 4X47A 4GZTA 4XMBA 2AEPA 4K3YA 2HTRA 4XJRA 2W5NA 1DIMA 4HZZA 1MS3A 2DYHA 4WEFA 4JMLA 3O4PA 5HUGA 4YZ4A 1V3BA 4IYGA 2DG1A 1ZGKA 1SO7A 2YA5A 2BF6A 4FP3A 3GVJA 4H53A 3O9KA 2GHSA 2YDPA 2HTUA 3HLHA 4AH4A 1A14N 3FW0A 3D12A 2W8BB 4D52B 1W0OA 3V1SA 2ISMA 4GN8A 1NSDA 1S1DA 2F27A 2YA8A 5FNTA 1USRA 2XZJA 3SLIA 5M1ZA 4ZLRA 1C5KA 2XCYA 1XOEA 3K3AA 3V64C 5EX7A 1NSBA 4NCSA 4XYXA 5FZNA 4ZY3A 3H72A 1INWA 4FPHA 1NNBA 1NNCA 1INVA 1N6EA 4D4UA 3S8ZA 1CRUA 4B7RA 2GVXA 1NMBN 3TIAA 4I00A 4AGIA 4C1YA 2DSOA 3TI4A
chains in the Genus database with same CATH topology
1WP5A 1SUUA 3L6VA 4G3NA 3NO0A 1ZI0A 3UC1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WP5 A;  1SUU A;  3L6V A;  4G3N A;  3NO0 A;  1ZI0 A;  3UC1 A; 
#chains in the Genus database with same CATH topology
 2IAO A;  4UF7 A;  2G8S A;  1MWE A;  1A4Q A;  2XZK A;  5FNR A;  3NN9 A;  1VCU A;  3TIC A;  1C9U A;  4FPK A;  2ZW9 A;  2VK5 A;  2HQS A;  4AHA A;  4XIO A;  3A72 A;  2AH2 A;  3B7E A;  4XHB A;  4XIK A;  2C4L A;  2CML A;  4G3N A;  5GTQ A;  4MWQ A;  4M4U A;  3DAS A;  3A9H A;  3H6J A;  1INY A;  2QWG A;  4MWJ A;  1NCB N;  4CSD A;  1EUS A;  3AMS A;  2VK7 A;  4GDI A;  4O5T A;  4YW1 A;  4YW4 A;  1F8D A;  4YW3 A;  2GVU A;  1S18 A;  4MWR A;  5GX5 A;  4FPL A;  2DG0 A;  4GB1 A;  2ZB5 A;  3O9J A;  3OPZ A;  4YY8 A;  4ZGC A;  4FOY A;  3FVZ A;  2AEQ A;  3A71 A;  5HX0 A;  5FNU A;  4XE9 A;  2XZI A;  2WOZ A;  3GVL A;  1NCA N;  5FZJ A;  1W8N A;  4XJQ A;  4XOG A;  2VW2 A;  4GZQ A;  5JYY A;  1X2R A;  1CRZ A;  3TI8 A;  3E5Z A;  4B7Q A;  2X9M A;  4KS5 A;  3K38 A;  3SIL A;  1NPE A;  4M4N A;  2JKB A;  1V2I A;  3VNH A;  4X6K A;  2Z32 A;  4WA5 A;  3SRG A;  3Q6T A;  2W38 A;  3TC9 A;  1NMA N;  3IAX A;  1IVD A;  4FOV A;  2IAS A;  4CPL A;  4O5S A;  3TI5 A;  1N1S A;  1N1Y A;  3KYA A;  4FPG A;  3ZGD A;  4FPE A;  4DGR A;  2AGS A;  3CL0 A;  2VW1 A;  4XJ8 A;  5D9D A;  2VW0 A;  1SLI A;  3II7 A;  1MS1 A;  2FP8 A;  4GNA A;  4GZW A;  1MZ5 A;  4GZP A;  1RWI A;  3WN7 A;  2FLU X;  4XMI A;  4WA3 A;  1SLL A;  4GEZ A;  3WWA A;  1ZI0 A;  2C4A A;  4IMB A;  1Z4V A;  2HTY A;  4MZA A;  2QWI A;  1N1T A;  1U6D X;  5B2D A;  4Q1U A;  1V04 A;  1USX A;  4NN9 A;  1INH A;  2F0Z A;  5FWW A;  1B9T A;  1DIL A;  4FPF A;  1W21 A;  5B2C A;  1F8B A;  1ING A;  1QLG A;  3U0S A;  2W20 A;  4HZX A;  4HW6 A;  4C1Y B;  1MS4 A;  2ZZK A;  2F13 A;  4MWV A;  4J9T A;  3LI3 A;  3H71 A;  2IAW A;  4WA4 A;  4XJ9 A;  1MS8 A;  3SRE A;  4HHQ A;  2HTQ A;  2F26 A;  4QN6 A;  4IQK A;  3NSS A;  2XN4 A;  3CYE A;  2QWC A;  2VK6 A;  3G4H A;  5NN9 A;  1KIT A;  1S0J A;  1NN2 A;  3Q6P A;  4FPJ A;  4M3M A;  3SAL A;  4B7N A;  2QWE A;  4KS3 A;  4FZH A;  6NN9 A;  3SOQ A;  1IUC A;  4MWL A;  3BEQ A;  1IVB A;  4GZX A;  3HLI A;  3S8V A;  1RWL A;  4QN7 A;  1V0E A;  2YA6 A;  1N6D A;  3K37 A;  3S94 A;  4ASC A;  4YZ1 A;  2QWK A;  4XMA A;  3T1E A;  3ADE A;  7NN9 A;  1F8C A;  4XHX A;  4FPC A;  4L7C A;  1OFZ A;  2VAQ A;  3BYC A;  3K39 A;  2ZWA A;  4MZE A;  5F9T A;  3KGG A;  2F12 A;  4FPO B;  4KS4 A;  4XJU A;  1Z4X A;  2FPC A;  3V65 B;  1W0P A;  5GX1 A;  1MS0 A;  2F25 A;  3ALX A;  3H73 A;  1VCJ A;  1H6L A;  1IUB A;  2HTW A;  3CL2 A;  4GJT A;  3LI4 A;  1EUR A;  1WP5 A;  1Z4Y A;  2ZB6 A;  4JF7 A;  1B9S A;  5HUN A;  4XJA A;  3D11 A;  2FHR A;  2P4O A;  5GX3 A;  4B7J A;  3ZGC A;  1MS5 A;  3LI5 A;  4HZY A;  1NMC A;  1E8V A;  1A4G A;  4GZS A;  3G4E A;  4YZ5 A;  4GNB A;  1QBI A;  3K36 A;  2GVV A;  1W20 A;  4QN3 A;  2W5O A;  2BAT A;  1X2J A;  3L6V A;  4MWU A;  2H2U A;  1IVC A;  4QNP A;  5HUK A;  3DR2 A;  3GVK A;  1E8U A;  4QN4 A;  2B8H A;  1MZ6 A;  2IAT A;  3NO0 A;  5F72 C;  3PJQ A;  1IVF A;  3W09 A;  2BER A;  2F11 A;  4DG6 A;  3SAN A;  3I1C A;  3WDZ A;  4MWW A;  4Q6K A;  4A0P A;  2SIL A;  4FOW A;  4CPN A;  1BJI A;  1EUT A;  2HT7 A;  4HZV A;  4HIZ A;  2QE8 A;  1B9V A;  1S0I A;  5GX4 A;  4WEG A;  3P5B L;  1Q7F A;  4K1J A;  4QN5 A;  2F28 A;  1V0Z A;  4R40 A;  4GZO A;  1V3C A;  4GNC A;  4FOQ A;  2F10 A;  3TIB A;  2HT5 A;  2FP9 A;  1V0F A;  2IAQ A;  2F29 A;  5FNS A;  2VSM A;  5GX2 A;  4CPM A;  4FQ4 A;  2YDT A;  4UOU A;  2QWA A;  2IAR A;  3HRP A;  2W8B A;  4D52 A;  5CGJ A;  4FPY A;  4MX0 A;  1NNA A;  1E1A A;  2A75 A;  2IAX A;  4XIL A;  4YW5 A;  3TI6 A;  4YZ2 A;  1N7D A;  5FNQ A;  1SUU A;  4B7M A;  1NCC N;  1NCD N;  3AMR A;  4D52 C;  4HHO A;  4MJV A;  1INX A;  4PWZ A;  2IVZ A;  1Z4W A;  4L7D A;  4BBW A;  1IJQ A;  5EO7 A;  1V3D A;  4IN4 A;  5D9C A;  1PJX A;  4K1I A;  3TI3 A;  1POO A;  1XOG A;  1INF A;  3CKZ A;  4KS2 A;  4CH9 A;  2POO A;  4FP2 A;  1F8E A;  4MWY A;  2F24 A;  2VPJ A;  4GDJ A;  4XJZ A;  2V91 A;  4YW2 A;  1MS9 A;  1W1X A;  4GN9 A;  4FJ6 A;  5H47 A;  3A9G A;  4KS1 A;  3B69 A;  2VVZ A;  4H52 A;  4X49 A;  4CPY A;  3ALW A;  2HT8 A;  3VNG A;  2VWD A;  1CVM A;  2YA4 A;  4GN7 A;  3INB A;  2YA7 A;  1MR5 A;  2H2N A;  3UC1 A;  1L7G A;  3JU4 A;  4SLI A;  4IFN X;  2QWH A;  2QWD A;  4HZW A;  1E8T A;  4MWX A;  1N1V A;  1N6F A;  4MC7 A;  4K1H A;  3Q6K A;  4CHB A;  2QWB A;  4CPZ A;  1W8O A;  1WCQ A;  1EUU A;  4CPO A;  1V3E A;  3SOV A;  4XJW A;  4D8S A;  1NSC A;  2RKC A;  4IFJ A;  5D9B A;  4IFL X;  4NC5 A;  2FPB A;  4MJU A;  3S2K A;  4K1K A;  2IAU A;  1IVE A;  1L7H A;  1WCS A;  2HU0 A;  2HU4 A;  4N1B A;  4FVK A;  4AGT A;  1CQ1 A;  5HUM A;  1SNT A;  2VSK A;  2SLI A;  4YZ3 A;  2QWF A;  3WW9 A;  2HTV A;  3SOB B;  2IAV A;  1IVG A;  5EO8 A;  4X4A A;  1Z4Z A;  1K32 A;  4M4V A;  2OJH A;  2BZD A;  2GVW A;  2QWJ A;  2SIM A;  1Z50 A;  4L7B A;  2IAP A;  1L7F A;  4X47 A;  4GZT A;  4XMB A;  2AEP A;  4K3Y A;  2HTR A;  4XJR A;  2W5N A;  1DIM A;  4HZZ A;  1MS3 A;  2DYH A;  4WEF A;  4JML A;  3O4P A;  5HUG A;  4YZ4 A;  1V3B A;  4IYG A;  2DG1 A;  1ZGK A;  1SO7 A;  2YA5 A;  2BF6 A;  4FP3 A;  3GVJ A;  4H53 A;  3O9K A;  2GHS A;  2YDP A;  2HTU A;  3HLH A;  4AH4 A;  1A14 N;  3FW0 A;  3D12 A;  2W8B B;  4D52 B;  1W0O A;  3V1S A;  2ISM A;  4GN8 A;  1NSD A;  1S1D A;  2F27 A;  2YA8 A;  5FNT A;  1USR A;  2XZJ A;  3SLI A;  5M1Z A;  4ZLR A;  1C5K A;  2XCY A;  1XOE A;  3K3A A;  3V64 C;  5EX7 A;  1NSB A;  4NCS A;  4XYX A;  5FZN A;  4ZY3 A;  3H72 A;  1INW A;  4FPH A;  1NNB A;  1NNC A;  1INV A;  1N6E A;  4D4U A;  3S8Z A;  1CRU A;  4B7R A;  2GVX A;  1NMB N;  3TIA A;  4I00 A;  4AGI A;  4C1Y A;  2DSO A;  3TI4 A; 
#chains in the Genus database with same CATH homology
 1WP5 A;  1SUU A;  3L6V A;  4G3N A;  3NO0 A;  1ZI0 A;  3UC1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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