The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
80
|
sequence length |
314
|
structure length |
312
|
Chain Sequence |
STPGAQQVLFRTGIAAVNSTNHLRVYFQDVYGSIRESLYEGSWANGTEKNVIGNAKLGSPVAATSKELKHIRVYTLTEGNTLQEFAYDSGTGWYNGGLGGAKFQVAPYSIAAVFLAGTDALQLRIYAQKPDNTIQEYMWNGDGWKEGTNLGGALPGTGIGATSFRYTDYNGPSIRIWFQTDDLKLVQRAYDPHKGWYPDLVTIFDRAPPRTAIAATSFGAGNSSIYMRIYFVNSDNTIWQVWDHGKGYHDKGTITPVIQGSEVAIISWGSFANNGPDLRLYFQNGTYISAVSEWVWNRAHGSQLGRSALPPA
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
A Soluble Fucose-Specific Lectin from Aspergillus Fumigatus Conidia - Structure, Specificity and Possible Role in Fungal Pathogenicity.
pubmed doi rcsb |
| molecule keywords |
FUCOSE-SPECIFIC LECTIN FLEA
|
| molecule tags |
Sugar binding protein
|
| source organism |
Aspergillus fumigatus
|
| total genus |
80
|
| structure length |
312
|
| sequence length |
314
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature | |
| pdb deposition date | 2012-01-30 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF07938 | Fungal_lectin | Fungal fucose-specific lectin |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | 6 Propeller | Neuraminidase | Fucose-specific lectin |
#chains in the Genus database with same CATH superfamily 1IUC A; 4AGT A; 4C1Y A; 4D52 B; 4D52 C; 4D52 A; 4AGI A; 4AHA A; 4D4U A; 5EO7 A; 5H47 A; 4CSD A; 4UOU A; 4C1Y B; 5EO8 A; 1IUB A; 4AH4 A; 1OFZ A; #chains in the Genus database with same CATH topology 4B7R A; 2F28 A; 2AEQ A; 4CPO A; 1F8D A; 3WWA A; 3K39 A; 5FZJ A; 2F29 A; 2HTR A; 2ZW9 A; 3ZGC A; 3GVJ A; 4B7Q A; 3TIA A; 1N6F A; 3DR2 A; 2VWD A; 3TI3 A; 4CPM A; 4FPG A; 4PWZ A; 1MS5 A; 1Q7F A; 1MWE A; 1WCQ A; 2V91 A; 2XZK A; 5D9D A; 4NC5 A; 4KS1 A; 1INV A; 3SOV A; 4FOQ A; 4HZY A; 4GN8 A; 3TC9 A; 2IAS A; 3JU4 A; 1NCB N; 1L7H A; 2FPC A; 2HTV A; 5FWW A; 4QN5 A; 4XIK A; 5HUM A; 3ALW A; 2OJH A; 2QWG A; 2FP8 A; 2H2N A; 3HLH A; 2BF6 A; 1XOG A; 3WN7 A; 4NN9 A; 4XIO A; 4YZ2 A; 2DG1 A; 5FNT A; 3CL2 A; 1V0F A; 4XMB A; 3UC1 A; 3CL0 A; 4GZW A; 4B7J A; 1B9T A; 1F8B A; 1S1D A; 2HTW A; 3SRG A; 3V65 B; 4MC7 A; 1IVC A; 1SO7 A; 4B7M A; 2SLI A; 1MS1 A; 1V0E A; 2QWA A; 5EX7 A; 4O5S A; 4R40 A; 1IUC A; 3LI3 A; 2IAX A; 1Z4W A; 3IAX A; 4QN6 A; 1IVD A; 1QLG A; 4C1Y A; 4QN3 A; 3T1E A; 4J9T A; 1NCA N; 4IFL X; 4N1B A; 3NO0 A; 2QWJ A; 4HHO A; 4XOG A; 4GNB A; 2QWE A; 2ZWA A; 2XCY A; 2YA8 A; 4MJU A; 1INH A; 2FHR A; 2F11 A; 3SAN A; 3PJQ A; 3SRE A; 2VW1 A; 3H73 A; 1DIL A; 1Z4X A; 4K1J A; 4XJR A; 4X47 A; 2VW0 A; 1Z4Z A; 2HU0 A; 3LI5 A; 3TI8 A; 4GZT A; 3CKZ A; 4FPF A; 2C4L A; 4IQK A; 2F25 A; 3I1C A; 2QWH A; 5JYY A; 3U0S A; 3SAL A; 4MZA A; 5FNU A; 2AH2 A; 5M1Z A; 1B9V A; 1DIM A; 2VK7 A; 1MZ5 A; 1IUB A; 4WA5 A; 5FNR A; 3G4H A; 2HTQ A; 5GX1 A; 4XJZ A; 4GZX A; 4IFN X; 3NN9 A; 4D52 B; 5HUK A; 1L7G A; 1WP5 A; 4GZS A; 4MWX A; 4CPL A; 2F0Z A; 3S8V A; 2HQS A; 4A0P A; 4ZGC A; 2AGS A; 4CHB A; 3AMR A; 3SIL A; 1USX A; 1V0Z A; 2ZB5 A; 4AGT A; 1Z4Y A; 4D8S A; 1EUR A; 3INB A; 1A14 N; 2H2U A; 3A72 A; 4FJ6 A; 1W8N A; 4GZQ A; 1EUU A; 5F9T A; 2F24 A; 4JML A; 1POO A; 1CQ1 A; 4XJW A; 2B8H A; 3K37 A; 4NCS A; 2SIL A; 3Q6K A; 5CGJ A; 1W1X A; 4HZX A; 2RKC A; 4C1Y B; 1N6E A; 2YA4 A; 5F72 C; 1INF A; 4GNA A; 4G3N A; 4YZ3 A; 1VCJ A; 1EUT A; 2IAO A; 2GVW A; 5EO8 A; 4XIL A; 4JF7 A; 2IAP A; 5D9C A; 1IVG A; 3DAS A; 1V3D A; 4L7D A; 2POO A; 4I00 A; 3E5Z A; 2W5N A; 4XYX A; 1MS4 A; 1N1S A; 4XJU A; 3SLI A; 3K3A A; 4M4N A; 1OFZ A; 4IFJ A; 1H6L A; 1V3B A; 4D52 C; 2VPJ A; 4FPL A; 4D4U A; 3ZGD A; 4WEG A; 1SUU A; 3ALX A; 1MS3 A; 2F10 A; 3D12 A; 1CRZ A; 4WEF A; 4UF7 A; 1CRU A; 2BAT A; 2W5O A; 3V1S A; 1RWL A; 2W8B B; 4GJT A; 3WDZ A; 2DG0 A; 2GHS A; 2F13 A; 3FW0 A; 4FZH A; 4FPC A; 3TI4 A; 2GVV A; 4CSD A; 2YDT A; 4ASC A; 2BER A; 1N1Y A; 1ING A; 1MR5 A; 4YZ5 A; 2FP9 A; 4QNP A; 4BBW A; 2QWD A; 1QBI A; 4M4V A; 4QN4 A; 1NSC A; 4DG6 A; 1B9S A; 1NPE A; 1N6D A; 4X49 A; 4XE9 A; 1C5K A; 1IJQ A; 4GDJ A; 4GDI A; 1W20 A; 4MJV A; 4MZE A; 5D9B A; 3BYC A; 1NMA N; 1XOE A; 2F27 A; 5HUG A; 1NNC A; 4FPY A; 5FZN A; 1NNB A; 6NN9 A; 4GNC A; 2IVZ A; 2F12 A; 3H72 A; 2XZI A; 4L7C A; 3SOQ A; 1K32 A; 3S2K A; 2VVZ A; 5GX5 A; 2IAQ A; 4H52 A; 3H71 A; 2HTU A; 5GTQ A; 1IVE A; 1KIT A; 4YW4 A; 1X2J A; 2CML A; 2P4O A; 2QWF A; 4HZW A; 4HZV A; 4MWL A; 4WA4 A; 4CPY A; 1NCC N; 4GB1 A; 4FOY A; 1Z4V A; 4FPH A; 3D11 A; 4XJA A; 4YZ4 A; 3GVK A; 4MWW A; 4XHB A; 4HW6 A; 2XN4 A; 2IAT A; 2IAU A; 4FVK A; 2VSK A; 4XJ8 A; 2GVU A; 1Z50 A; 4YZ1 A; 2QWK A; 3K36 A; 1V04 A; 4HIZ A; 4MWQ A; 3H6J A; 1INW A; 1ZI0 A; 2VK5 A; 5FNS A; 2QWI A; 4SLI A; 5HUN A; 4CH9 A; 1SLL A; 3HRP A; 1N1V A; 2C4A A; 1MZ6 A; 4GN9 A; 3S8Z A; 2VW2 A; 1F8E A; 3TI6 A; 1PJX A; 3O9K A; 4XMI A; 1NMB N; 2HT5 A; 1NCD N; 1NSD A; 1VCU A; 1WCS A; 5B2D A; 5FNQ A; 1INX A; 1S18 A; 4DGR A; 2YA6 A; 4FPE A; 4FPJ A; 1S0J A; 4MWU A; 1MS8 A; 2FPB A; 2QWC A; 2A75 A; 2ZB6 A; 4XJQ A; 1L7F A; 1F8C A; 2G8S A; 3O4P A; 2SIM A; 2YA7 A; 3P5B L; 1W21 A; 4GZO A; 4XMA A; 4M3M A; 5GX4 A; 2IAV A; 3OPZ A; 2ZZK A; 4KS3 A; 1E8T A; 2GVX A; 4MWV A; 4D52 A; 1INY A; 3FVZ A; 1NNA A; 1NSB A; 1SNT A; 2XZJ A; 3LI4 A; 3O9J A; 2VK6 A; 4IN4 A; 4K1K A; 1W0O A; 4K1H A; 3II7 A; 4FQ4 A; 1N1T A; 4IMB A; 1A4G A; 4FPO B; 4CPN A; 3A71 A; 5EO7 A; 1V2I A; 2FLU X; 3W09 A; 1CVM A; 1MS9 A; 4IYG A; 4K3Y A; 7NN9 A; 4FOW A; 4K1I A; 2QWB A; 3A9H A; 5GX3 A; 2X9M A; 3GVL A; 4B7N A; 4KS2 A; 4GEZ A; 4ZLR A; 3Q6P A; 1W8O A; 3G4E A; 4GZP A; 2HTY A; 4YW2 A; 3ADE A; 2IAW A; 2DSO A; 3TI5 A; 2IAR A; 1IVF A; 3HLI A; 2BZD A; 3A9G A; 1BJI A; 1SLI A; 4UOU A; 1C9U A; 1USR A; 4M4U A; 5HX0 A; 2HT7 A; 2VAQ A; 1E8U A; 2JKB A; 2WOZ A; 3KGG A; 3NSS A; 5B2C A; 1EUS A; 1NN2 A; 3VNH A; 1V3E A; 2YA5 A; 3V64 C; 3TIB A; 2HT8 A; 4Q1U A; 1S0I A; 4Q6K A; 3AMS A; 1MS0 A; 1E8V A; 3L6V A; 4FOV A; 5NN9 A; 4CPZ A; 3K38 A; 4L7B A; 3TIC A; 4X4A A; 4YY8 A; 4QN7 A; 2VSM A; 3S94 A; 3WW9 A; 1E1A A; 4YW5 A; 3B69 A; 4HZZ A; 1RWI A; 4MWY A; 1A4Q A; 3B7E A; 4YW3 A; 4XHX A; 2YDP A; 4GN7 A; 1U6D X; 2HU4 A; 4YW1 A; 1W0P A; 4XJ9 A; 1ZGK A; 4FP2 A; 4MX0 A; 2ISM A; 2W38 A; 2W8B A; 3SOB B; 4HHQ A; 4WA3 A; 4H53 A; 4X6K A; 1X2R A; 4AGI A; 4AHA A; 3KYA A; 3VNG A; 5H47 A; 4KS4 A; 3CYE A; 2AEP A; 4FP3 A; 2DYH A; 3BEQ A; 5GX2 A; 1IVB A; 4MWJ A; 4MWR A; 4AH4 A; 1V3C A; 2Z32 A; 4FPK A; 4KS5 A; 1N7D A; 2W20 A; 1NMC A; 2F26 A; 3Q6T A; 4ZY3 A; 2QE8 A; 4O5T A; #chains in the Genus database with same CATH homology 1IUC A; 4AGT A; 4C1Y A; 4D52 B; 4D52 C; 4D52 A; 4AGI A; 4AHA A; 4D4U A; 5EO7 A; 5H47 A; 4CSD A; 4UOU A; 4C1Y B; 5EO8 A; 1IUB A; 4AH4 A; 1OFZ A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
