4AGTA

Crystal structure of fucose binding lectin from aspergillus fumigatus (afl) in complex with fuc1-6glcnac.
Total Genus 83
5010015020025030001020304050607080
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
314
structure length
314
Chain Sequence
STPGAQQVLFRTGIAAVNSTNHLRVYFQDVYGSIRESLYEGSWANGTEKNVIGNAKLGSPVAATSKELKHIRVYTLTEGNTLQEFAYDSGTGWYNGGLGGAKFQVAPYSCIAAVFLAGTDALQLRIYAQKPDNTIQEYMWNGDGWKEGTNLGGALPGTGIGATSFRYTDYNGPSIRIWFQTDDLKLVQRAYDPHKGWYPDLVTIFDRAPPRTAIAATSFGAGNSSIYMRIYFVNSDNTIWQVCWDHGKGYHDKGTITPVIQGSEVAIISWGSFANNGPDLRLYFQNGTYISAVSEWVWNRAHGSQLGRSALPPA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
3H1 (5-8)TIV16 (288-291)TI1 (30-33)S3 (34-40)EMPTYTII1 (10-13)TII7 (261-264)S2 (23-29)S1 (15-20)S22 (266-271)S6 (62-67)TIV1 (19-22)TII2 (57-60)S5 (52-55)TI2 (48-51)TVIII2 (309-312)TIV2 (40-43)S8 (83-89)S7 (71-77)S10 (112-116)TIV5 (66-69)TII'2 (67-70)3H2 (99-102)TI4 (107-110)TI5 (131-134)S11 (125-130)S12 (135-141)TII4 (156-159)S13 (146-154)TIV8 (141-144)S16 (187-193)TII5 (210-213)S15 (175-181)S14 (161-166)S18 (215-223)TI6 (168-171)TIV12 (223-226)S21 (250-259)TI7 (182-185)TI8 (193-196)S17 (197-206)S19 (226-235)TI10 (235-238)S20 (239-246)S23 (280-286)TI11 (273-276)TIV15 (274-277)S24 (294-300)TIV17 (289-292)TIV18 (290-293)S25 (304-308)TIV19 (300-303)TII3 (89-92)TII6 (246-249)S4 (44-46)TI3 (78-81)S9 (93-96)Updating...
connected with : NaN
molecule tags Sugar binding protein
source organism Aspergillus fumigatus
publication title Structural Insights Into Aspergillus Fumigatus Lectin Specificity: Afl Binding Sites are Functionally Non-Equivalent
pubmed doi rcsb
molecule keywords FUCOSE-SPECIFIC LECTIN FLEA
total genus 83
structure length 314
sequence length 314
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-01-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07938 Fungal_lectin Fungal fucose-specific lectin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.120.10.70 Mainly Beta 6 Propeller Neuraminidase Fucose-specific lectin 4agtA00
4D52C 5EO8A 4CSDA 1OFZA 5EO7A 1IUCA 4D52B 4UOUA 4C1YB 4AGIA 4AGTA 1IUBA 4AH4A 4C1YA 4D4UA 4AHAA 5H47A 4D52A
chains in the Genus database with same CATH superfamily
3D12A 3Q6TA 4IFNX 5D9BA 2ZB5A 4QN3A 3B69A 3O9JA 2IAUA 2DYHA 4YW1A 4WA5A 3LI4A 4B7NA 5D9CA 4ASCA 2CMLA 3H6JA 3TICA 1N7DA 2VW0A 4GNAA 4HZXA 3TI5A 3AMSA 4YW4A 4N1BA 1E8UA 5NN9A 3BEQA 1INGA 2IAWA 2AH2A 3S8ZA 4MC7A 2HTWA 4YZ4A 4HZWA 4XJAA 4FPEA 2C4LA 1IVBA 2HTQA 3A9HA 4C1YA 4GB1A 5FWWA 2SILA 1QBIA 3S94A 1N1SA 2JKBA 1W1XA 4FPJA 1NCDN 3ZGDA 4M4VA 4FOWA 1WP5A 1EUSA 2F24A 5FNQA 2QWGA 4FOVA 4FPFA 4XJUA 2IVZA 3SOQA 5F72C 2HTYA 1BJIA 2GHSA 4K3YA 1N6FA 2IATA 2QE8A 4BBWA 1NNCA 2ZZKA 1NSCA 4FP2A 1RWIA 2QWEA 5GX5A 2ZB6A 4GN7A 4SLIA 1USXA 4H53A 4XHXA 3A9GA 5HX0A 1INWA 4FVKA 4GZXA 4XIOA 2RKCA 4XJ9A 4D52C 4XYXA 3Q6KA 1WCSA 2QWDA 4KS2A 4MJUA 2VW1A 4XMIA 4YZ1A 2HT5A 4IFLX 4A0PA 5FNUA 1INXA 2F28A 1SNTA 3H73A 4GZQA 2OJHA 1VCJA 4YW3A 1W21A 3S8VA 7NN9A 2IAVA 5HUKA 4MZAA 3K38A 4CPZA 2H2NA 3TI3A 3SREA 2F25A 2IAQA 2HU0A 2VVZA 1A14N 4I00A 2F13A 1V3EA 5FNTA 2YA7A 2YA8A 3E5ZA 3V65B 1USRA 1V2IA 4CPOA 1NPEA 1V04A 2VK7A 4HHQA 4MWLA 1MS1A 1NMCA 4WA4A 4GNBA 2POOA 1N1TA 3KGGA 1SO7A 2W20A 4MWVA 4FPHA 4KS1A 4UOUA 1B9TA 4X49A 3NSSA 3V64C 3HLIA 1L7FA 3B7EA 3D11A 4XJ8A 1V0ZA 4JF7A 1NNAA 5GX3A 5B2DA 2IARA 4NN9A 5GX4A 1F8EA 1PJXA 2IAXA 4XJWA 4MZEA 4K1JA 3G4HA 4MWRA 4IN4A 3CYEA 1DILA 4WEFA 3SRGA 4O5SA 2YA4A 4XJQA 4M4NA 2GVWA 4AHAA 4KS3A 4XE9A 2AGSA 1MS3A 1F8BA 2QWAA 1QLGA 3WW9A 1MZ6A 1SUUA 4GDJA 3U0SA 1NCAN 4C1YB 2IAOA 4HW6A 3WWAA 2DG0A 2DSOA 2QWBA 1A4GA 1C5KA 2YDPA 3DASA 4L7BA 1EUTA 2XZIA 3HRPA 5D9DA 2VAQA 1MS5A 4ZGCA 1F8DA 3II7A 2ZWAA 1POOA 2FLUX 1W0PA 2BZDA 2FP9A 3I1CA 3H72A 5FNSA 2IAPA 4HZYA 3WDZA 5F9TA 1V0FA 4G3NA 1XOEA 5JYYA 4FQ4A 4YW5A 2G8SA 1N6DA 3LI3A 3FVZA 4XIKA 3Q6PA 1Q7FA 2VW2A 3TI6A 3AMRA 2HU4A 4B7QA 2QWFA 4GEZA 1E8VA 1CVMA 1N1VA 3GVJA 2GVXA 3P5BL 4IQKA 4GJTA 4FPYA 1F8CA 1MS0A 3V1SA 1NCCN 3SANA 2HT7A 2VK5A 4GNCA 2HTRA 2XN4A 2AEPA 2Z32A 3IAXA 2GVVA 4YZ5A 2FPBA 2XZJA 3ADEA 4M3MA 1Z50A 4CPMA 4AGTA 2QWHA 2F0ZA 4FP3A 4J9TA 1L7GA 1C9UA 4H52A 3GVLA 4L7CA 2ZW9A 4XMBA 4HHOA 3ALWA 4M4UA 1INYA 4QN6A 1INHA 3S2KA 5EO7A 1VCUA 3W09A 2F12A 3OPZA 4GZWA 1INVA 6NN9A 1NMBN 4D8SA 4CPLA 5EO8A 1OFZA 5EX7A 1ZI0A 4FPCA 2ISMA 4CHBA 1EURA 1Z4WA 1V3BA 2VSKA 2FHRA 1MWEA 2B8HA 3K3AA 4HZZA 5FNRA 1U6DX 4FOQA 3BYCA 4CSDA 5HUMA 2W5NA 1CRUA 5CGJA 1CQ1A 4HIZA 1IVEA 2F26A 4MWQA 3FW0A 4Q1UA 1S0JA 4MWWA 4YY8A 5M1ZA 4FOYA 1S1DA 2P4OA 4FPOB 1MS9A 4IYGA 2F11A 5HUNA 5GX1A 2FP8A 4K1IA 3G4EA 5B2CA 2W8BA 1DIMA 1IJQA 1NN2A 2W8BB 4QN7A 5FZJA 4MJVA 4B7JA 4MWXA 3HLHA 4WEGA 4DG6A 2F10A 1Z4XA 4YW2A 3A72A 1W8OA 3SALA 4ZLRA 1V3DA 3SLIA 1NSDA 4XILA 1E1AA 2BATA 2HTUA 4Q6KA 2AEQA 5GTQA 3JU4A 3SOBB 4PWZA 1IVFA 2DG1A 3KYAA 3CL0A 4K1HA 1IVGA 4D4UA 4NCSA 1MS4A 3K37A 1V3CA 3CKZA 1NNBA 1RWLA 2VPJA 1IUBA 1X2JA 2BF6A 4AH4A 2XZKA 4R40A 4D52A 1IVDA 1MZ5A 3PJQA 4CPYA 3VNGA 4GDIA 4CPNA 3TIBA 4D52B 1NCBN 3H71A 1SLLA 2W38A 3K36A 1K32A 2HT8A 5GX2A 3O4PA 4QN5A 4JMLA 2YA6A 3TI8A 4X6KA 1XOGA 4WA3A 1Z4ZA 4XMAA 2VSMA 4DGRA 3L6VA 2IASA 2QWKA 1EUUA 4CH9A 2V91A 4KS4A 4XOGA 2QWCA 4FJ6A 3TI4A 4L7DA 4FPGA 3TC9A 2GVUA 4MX0A 4GZSA 4IFJA 1Z4VA 5H47A 4B7MA 1E8TA 4GN9A 3UC1A 1IVCA 3GVKA 3SILA 3NN9A 2QWJA 3VNHA 3A71A 3T1EA 1H6LA 5HUGA 4FPKA 4X4AA 1N1YA 1MS8A 3O9KA 2W5OA 4B7RA 2WOZA 4UF7A 2XCYA 4ZY3A 4AGIA 4MWYA 3ALXA 1N6EA 4QN4A 1KITA 4NC5A 3DR2A 1W8NA 3WN7A 4XHBA 1NMAN 1ZGKA 2BERA 4QNPA 3LI5A 4MWUA 4MWJA 4X47A 3SOVA 1NSBA 5FZNA 1W20A 4GZPA 2SIMA 1INFA 4XJZA 1IUCA 4FZHA 2QWIA 2SLIA 3NO0A 4YZ3A 2VK6A 3INBA 4O5TA 1X2RA 1W0OA 4GZTA 2C4AA 2YA5A 2F29A 1A4QA 1CRZA 4GN8A 1B9VA 4KS5A 1S18A 2H2UA 1SLIA 1V0EA 2VWDA 4FPLA 3TIAA 3ZGCA 4XJRA 4GZOA 2F27A 2HTVA 4HZVA 2X9MA 4K1KA 1MR5A 3CL2A 2HQSA 1S0IA 3K39A 1WCQA 1Z4YA 4IMBA 1L7HA 2YDTA 2FPCA 2A75A 4YZ2A 1B9SA
chains in the Genus database with same CATH topology
4D52C 5EO8A 4CSDA 1OFZA 5EO7A 1IUCA 4D52B 4UOUA 4C1YB 4AGIA 4AGTA 1IUBA 4AH4A 4C1YA 4D4UA 4AHAA 5H47A 4D52A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4D52 C;  5EO8 A;  4CSD A;  1OFZ A;  5EO7 A;  1IUC A;  4D52 B;  4UOU A;  4C1Y B;  4AGI A;  4AGT A;  1IUB A;  4AH4 A;  4C1Y A;  4D4U A;  4AHA A;  5H47 A;  4D52 A; 
#chains in the Genus database with same CATH topology
 3D12 A;  3Q6T A;  4IFN X;  5D9B A;  2ZB5 A;  4QN3 A;  3B69 A;  3O9J A;  2IAU A;  2DYH A;  4YW1 A;  4WA5 A;  3LI4 A;  4B7N A;  5D9C A;  4ASC A;  2CML A;  3H6J A;  3TIC A;  1N7D A;  2VW0 A;  4GNA A;  4HZX A;  3TI5 A;  3AMS A;  4YW4 A;  4N1B A;  1E8U A;  5NN9 A;  3BEQ A;  1ING A;  2IAW A;  2AH2 A;  3S8Z A;  4MC7 A;  2HTW A;  4YZ4 A;  4HZW A;  4XJA A;  4FPE A;  2C4L A;  1IVB A;  2HTQ A;  3A9H A;  4C1Y A;  4GB1 A;  5FWW A;  2SIL A;  1QBI A;  3S94 A;  1N1S A;  2JKB A;  1W1X A;  4FPJ A;  1NCD N;  3ZGD A;  4M4V A;  4FOW A;  1WP5 A;  1EUS A;  2F24 A;  5FNQ A;  2QWG A;  4FOV A;  4FPF A;  4XJU A;  2IVZ A;  3SOQ A;  5F72 C;  2HTY A;  1BJI A;  2GHS A;  4K3Y A;  1N6F A;  2IAT A;  2QE8 A;  4BBW A;  1NNC A;  2ZZK A;  1NSC A;  4FP2 A;  1RWI A;  2QWE A;  5GX5 A;  2ZB6 A;  4GN7 A;  4SLI A;  1USX A;  4H53 A;  4XHX A;  3A9G A;  5HX0 A;  1INW A;  4FVK A;  4GZX A;  4XIO A;  2RKC A;  4XJ9 A;  4D52 C;  4XYX A;  3Q6K A;  1WCS A;  2QWD A;  4KS2 A;  4MJU A;  2VW1 A;  4XMI A;  4YZ1 A;  2HT5 A;  4IFL X;  4A0P A;  5FNU A;  1INX A;  2F28 A;  1SNT A;  3H73 A;  4GZQ A;  2OJH A;  1VCJ A;  4YW3 A;  1W21 A;  3S8V A;  7NN9 A;  2IAV A;  5HUK A;  4MZA A;  3K38 A;  4CPZ A;  2H2N A;  3TI3 A;  3SRE A;  2F25 A;  2IAQ A;  2HU0 A;  2VVZ A;  1A14 N;  4I00 A;  2F13 A;  1V3E A;  5FNT A;  2YA7 A;  2YA8 A;  3E5Z A;  3V65 B;  1USR A;  1V2I A;  4CPO A;  1NPE A;  1V04 A;  2VK7 A;  4HHQ A;  4MWL A;  1MS1 A;  1NMC A;  4WA4 A;  4GNB A;  2POO A;  1N1T A;  3KGG A;  1SO7 A;  2W20 A;  4MWV A;  4FPH A;  4KS1 A;  4UOU A;  1B9T A;  4X49 A;  3NSS A;  3V64 C;  3HLI A;  1L7F A;  3B7E A;  3D11 A;  4XJ8 A;  1V0Z A;  4JF7 A;  1NNA A;  5GX3 A;  5B2D A;  2IAR A;  4NN9 A;  5GX4 A;  1F8E A;  1PJX A;  2IAX A;  4XJW A;  4MZE A;  4K1J A;  3G4H A;  4MWR A;  4IN4 A;  3CYE A;  1DIL A;  4WEF A;  3SRG A;  4O5S A;  2YA4 A;  4XJQ A;  4M4N A;  2GVW A;  4AHA A;  4KS3 A;  4XE9 A;  2AGS A;  1MS3 A;  1F8B A;  2QWA A;  1QLG A;  3WW9 A;  1MZ6 A;  1SUU A;  4GDJ A;  3U0S A;  1NCA N;  4C1Y B;  2IAO A;  4HW6 A;  3WWA A;  2DG0 A;  2DSO A;  2QWB A;  1A4G A;  1C5K A;  2YDP A;  3DAS A;  4L7B A;  1EUT A;  2XZI A;  3HRP A;  5D9D A;  2VAQ A;  1MS5 A;  4ZGC A;  1F8D A;  3II7 A;  2ZWA A;  1POO A;  2FLU X;  1W0P A;  2BZD A;  2FP9 A;  3I1C A;  3H72 A;  5FNS A;  2IAP A;  4HZY A;  3WDZ A;  5F9T A;  1V0F A;  4G3N A;  1XOE A;  5JYY A;  4FQ4 A;  4YW5 A;  2G8S A;  1N6D A;  3LI3 A;  3FVZ A;  4XIK A;  3Q6P A;  1Q7F A;  2VW2 A;  3TI6 A;  3AMR A;  2HU4 A;  4B7Q A;  2QWF A;  4GEZ A;  1E8V A;  1CVM A;  1N1V A;  3GVJ A;  2GVX A;  3P5B L;  4IQK A;  4GJT A;  4FPY A;  1F8C A;  1MS0 A;  3V1S A;  1NCC N;  3SAN A;  2HT7 A;  2VK5 A;  4GNC A;  2HTR A;  2XN4 A;  2AEP A;  2Z32 A;  3IAX A;  2GVV A;  4YZ5 A;  2FPB A;  2XZJ A;  3ADE A;  4M3M A;  1Z50 A;  4CPM A;  4AGT A;  2QWH A;  2F0Z A;  4FP3 A;  4J9T A;  1L7G A;  1C9U A;  4H52 A;  3GVL A;  4L7C A;  2ZW9 A;  4XMB A;  4HHO A;  3ALW A;  4M4U A;  1INY A;  4QN6 A;  1INH A;  3S2K A;  5EO7 A;  1VCU A;  3W09 A;  2F12 A;  3OPZ A;  4GZW A;  1INV A;  6NN9 A;  1NMB N;  4D8S A;  4CPL A;  5EO8 A;  1OFZ A;  5EX7 A;  1ZI0 A;  4FPC A;  2ISM A;  4CHB A;  1EUR A;  1Z4W A;  1V3B A;  2VSK A;  2FHR A;  1MWE A;  2B8H A;  3K3A A;  4HZZ A;  5FNR A;  1U6D X;  4FOQ A;  3BYC A;  4CSD A;  5HUM A;  2W5N A;  1CRU A;  5CGJ A;  1CQ1 A;  4HIZ A;  1IVE A;  2F26 A;  4MWQ A;  3FW0 A;  4Q1U A;  1S0J A;  4MWW A;  4YY8 A;  5M1Z A;  4FOY A;  1S1D A;  2P4O A;  4FPO B;  1MS9 A;  4IYG A;  2F11 A;  5HUN A;  5GX1 A;  2FP8 A;  4K1I A;  3G4E A;  5B2C A;  2W8B A;  1DIM A;  1IJQ A;  1NN2 A;  2W8B B;  4QN7 A;  5FZJ A;  4MJV A;  4B7J A;  4MWX A;  3HLH A;  4WEG A;  4DG6 A;  2F10 A;  1Z4X A;  4YW2 A;  3A72 A;  1W8O A;  3SAL A;  4ZLR A;  1V3D A;  3SLI A;  1NSD A;  4XIL A;  1E1A A;  2BAT A;  2HTU A;  4Q6K A;  2AEQ A;  5GTQ A;  3JU4 A;  3SOB B;  4PWZ A;  1IVF A;  2DG1 A;  3KYA A;  3CL0 A;  4K1H A;  1IVG A;  4D4U A;  4NCS A;  1MS4 A;  3K37 A;  1V3C A;  3CKZ A;  1NNB A;  1RWL A;  2VPJ A;  1IUB A;  1X2J A;  2BF6 A;  4AH4 A;  2XZK A;  4R40 A;  4D52 A;  1IVD A;  1MZ5 A;  3PJQ A;  4CPY A;  3VNG A;  4GDI A;  4CPN A;  3TIB A;  4D52 B;  1NCB N;  3H71 A;  1SLL A;  2W38 A;  3K36 A;  1K32 A;  2HT8 A;  5GX2 A;  3O4P A;  4QN5 A;  4JML A;  2YA6 A;  3TI8 A;  4X6K A;  1XOG A;  4WA3 A;  1Z4Z A;  4XMA A;  2VSM A;  4DGR A;  3L6V A;  2IAS A;  2QWK A;  1EUU A;  4CH9 A;  2V91 A;  4KS4 A;  4XOG A;  2QWC A;  4FJ6 A;  3TI4 A;  4L7D A;  4FPG A;  3TC9 A;  2GVU A;  4MX0 A;  4GZS A;  4IFJ A;  1Z4V A;  5H47 A;  4B7M A;  1E8T A;  4GN9 A;  3UC1 A;  1IVC A;  3GVK A;  3SIL A;  3NN9 A;  2QWJ A;  3VNH A;  3A71 A;  3T1E A;  1H6L A;  5HUG A;  4FPK A;  4X4A A;  1N1Y A;  1MS8 A;  3O9K A;  2W5O A;  4B7R A;  2WOZ A;  4UF7 A;  2XCY A;  4ZY3 A;  4AGI A;  4MWY A;  3ALX A;  1N6E A;  4QN4 A;  1KIT A;  4NC5 A;  3DR2 A;  1W8N A;  3WN7 A;  4XHB A;  1NMA N;  1ZGK A;  2BER A;  4QNP A;  3LI5 A;  4MWU A;  4MWJ A;  4X47 A;  3SOV A;  1NSB A;  5FZN A;  1W20 A;  4GZP A;  2SIM A;  1INF A;  4XJZ A;  1IUC A;  4FZH A;  2QWI A;  2SLI A;  3NO0 A;  4YZ3 A;  2VK6 A;  3INB A;  4O5T A;  1X2R A;  1W0O A;  4GZT A;  2C4A A;  2YA5 A;  2F29 A;  1A4Q A;  1CRZ A;  4GN8 A;  1B9V A;  4KS5 A;  1S18 A;  2H2U A;  1SLI A;  1V0E A;  2VWD A;  4FPL A;  3TIA A;  3ZGC A;  4XJR A;  4GZO A;  2F27 A;  2HTV A;  4HZV A;  2X9M A;  4K1K A;  1MR5 A;  3CL2 A;  2HQS A;  1S0I A;  3K39 A;  1WCQ A;  1Z4Y A;  4IMB A;  1L7H A;  2YDT A;  2FPC A;  2A75 A;  4YZ2 A;  1B9S A; 
#chains in the Genus database with same CATH homology
 4D52 C;  5EO8 A;  4CSD A;  1OFZ A;  5EO7 A;  1IUC A;  4D52 B;  4UOU A;  4C1Y B;  4AGI A;  4AGT A;  1IUB A;  4AH4 A;  4C1Y A;  4D4U A;  4AHA A;  5H47 A;  4D52 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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