4ASCA

Crystal structure of the kelch domain of human kbtbd5
Total Genus 57

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
57
sequence length
308
structure length
307
Chain Sequence
MFLQDLIFMISEEGAVAYDPAANECYASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVLREIAYAAGATFLPVRLNVLRLTKM
5010015020025030030025020015010050
01020304050Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Protein binding
source organism Homo sapiens
publication title Structural Basis for Cul3 Assembly with the Btb-Kelch Family of E3 Ubiquitin Ligases.
pubmed doi rcsb
molecule keywords KELCH REPEAT AND BTB DOMAIN-CONTAINING PROTEIN 5
total genus 57
structure length 307
sequence length 308
ec nomenclature
pdb deposition date 2012-04-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01344 Kelch_1 Kelch motif
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.120.10.80 Mainly Beta 6 Propeller Neuraminidase Kelch-type beta propeller 4ascA00
4IFJA 3II7A 5FNTA 3WN7A 3VNHA 3ZGDA 2FLUX 2ZZKA 4CH9A 1U6DX 4XMBA 4L7DA 2WOZA 1ZGKA 2ZW9A 4IFNX 5FNSA 5FZJA 2XN4A 2ZWAA 2DYHA 4ZY3A 4L7BA 4IN4A 5FNQA 3VNGA 4IQKA 1X2RA 5FNUA 4ASCA 5FNRA 4ZGCA 4YY8A 5FZNA 3ZGCA 3WDZA 1X2JA 4CHBA 2VPJA 3ADEA 4IFLX 4N1BA 4L7CA 5F72C 2Z32A 5CGJA
chains in the Genus database with same CATH superfamily
2W5NA 3K38A 4FPCA 3WN7A 2IATA 2VK5A 4C1YB 1EUTA 3H72A 1NNCA 2FP8A 2IASA 2VK7A 3TI5A 1V0EA 4MX0A 5B2CA 3I1CA 1INWA 4MWXA 4HZYA 4YW5A 1NNBA 4QNPA 2QWBA 3WDZA 3W09A 4WEFA 4FOWA 2SILA 2GVWA 2QWEA 4FPJA 5F72C 1E8TA 1V0ZA 2GVXA 2QWAA 2W8BA 5NN9A 3G4HA 3AMRA 4Q1UA 3ZGDA 2FLUX 1VCJA 3SOBB 2AEQA 2WOZA 4FOYA 2IAQA 4AHAA 4MWVA 5HUGA 3UC1A 4O5TA 2VWDA 3SALA 2GVUA 1Q7FA 3G4EA 4QN6A 4FP2A 4IQKA 1Z4XA 2QE8A 1X2RA 4D8SA 1NPEA 4B7JA 4WEGA 1WP5A 4YW1A 1PJXA 2VPJA 4M4NA 1N1SA 4D52A 4CPOA 1KITA 4CPLA 5JYYA 3SLIA 4MWQA 5B2DA 1NMBN 4YW4A 1E8UA 2F25A 2G8SA 3A72A 4UOUA 4IFNX 3V64C 1USXA 3CL2A 4GEZA 3H73A 1OFZA 4GN8A 2A75A 3OPZA 5FNUA 4A0PA 4JF7A 2GHSA 3K3AA 4MC7A 2HTWA 2W8BB 2IAUA 4FPLA 2W38A 1IVFA 3CL0A 4Q6KA 2H2NA 2XZKA 1CRZA 1SUUA 1W0PA 3FVZA 5EO7A 4X49A 2VW0A 4K1HA 2X9MA 2F24A 4XJAA 4B7QA 4B7RA 2POOA 1QBIA 5F9TA 2DYHA 4PWZA 4ZY3A 4FPOB 1MS1A 4D52B 1NN2A 3DASA 1CRUA 1Z4VA 3D11A 4GZSA 4B7NA 4GZPA 1N6FA 5D9CA 3KGGA 1C5KA 3VNHA 4YW3A 4WA4A 1DILA 4XJ9A 3HLHA 5FNSA 4GN7A 3GVJA 1RWIA 4K3YA 3T1EA 3WW9A 4B7MA 3GVKA 2QWGA 3TI3A 3S94A 4NC5A 2IVZA 2ZB5A 4XYXA 4XIKA 1INFA 1INYA 5GX1A 4XE9A 4KS1A 2VVZA 5HUNA 2BERA 2ISMA 4UF7A 2VK6A 1IVBA 4JMLA 2YDTA 1F8CA 4XMAA 3O9JA 1WCQA 4IN4A 4FOVA 3K39A 1NCDN 3NN9A 1MS5A 3CKZA 3CYEA 4ZGCA 1WCSA 4H52A 1MZ5A 5HUMA 4KS5A 1V3EA 1NSBA 1SLLA 1NMAN 2F11A 4XJ8A 4BBWA 1USRA 1BJIA 3B69A 4FPYA 4MWLA 3O9KA 4FVKA 2QWKA 4GDIA 1V3BA 4L7BA 4SLIA 2V91A 4HZZA 1VCUA 1IJQA 1DIMA 5GX2A 4XJRA 2FPBA 4AGIA 1MS4A 1NSDA 4GZQA 4XHBA 1IUBA 2GVVA 4L7CA 4X6KA 2B8HA 4HHOA 3HLIA 1MS0A 2IAVA 4K1IA 2IAOA 4MWRA 4DG6A 3II7A 3NSSA 4FPHA 1F8BA 4FPKA 3KYAA 3GVLA 1Z4ZA 2ZWAA 3E5ZA 1L7HA 3A71A 4XJQA 1INXA 4GZWA 2HT8A 1NCCN 3FW0A 4XJWA 4AGTA 5FZNA 2F12A 4GN9A 2C4LA 1INVA 4IFLX 1IVGA 3TIBA 5EX7A 3BYCA 1Z4YA 1IUCA 4YY8A 1E8VA 1EUSA 4MWUA 4CPNA 4YZ4A 2ZZKA 3P5BL 4KS2A 1A4GA 1B9SA 1V3DA 4GJTA 4XJUA 5FZJA 2C4AA 2AEPA 3V65B 4I00A 1C9UA 1S1DA 3DR2A 4QN7A 5FWWA 3TI4A 3AMSA 1NNAA 4FPGA 2F28A 4CHBA 4N1BA 3A9HA 5HX0A 1N7DA 3O4PA 4XILA 2F29A 3SRGA 1U6DX 4GNCA 3HRPA 2VW1A 2XCYA 3PJQA 2XN4A 3Q6TA 4YZ1A 5GX4A 5GTQA 1MWEA 1POOA 4KS4A 1XOGA 1L7GA 1Z4WA 1ZI0A 3ALXA 5GX3A 3Q6KA 2QWDA 3U0SA 3A9GA 2HU0A 1A4QA 2W5OA 4CSDA 2HTYA 3BEQA 1N1YA 2Z32A 4QN4A 4IFJA 6NN9A 4QN3A 2VW2A 1NSCA 3LI3A 4YZ2A 2XZIA 1F8DA 2FP9A 2YDPA 2F27A 5D9BA 1S18A 1V2IA 1Z50A 4IMBA 1EURA 3K37A 1MS9A 4M4VA 3TC9A 2YA5A 5D9DA 4X47A 2VSMA 3TI8A 4GNBA 4GZOA 1B9VA 1W20A 2H2UA 3LI4A 5FNTA 4MWWA 4FP3A 2FPCA 2HTVA 3S2KA 4FOQA 2ZW9A 4J9TA 2HTUA 1NCAN 3ALWA 3WWAA 1V3CA 3TICA 1MS3A 5FNRA 4GZXA 4HIZA 5H47A 4FQ4A 2DG1A 1INGA 1S0JA 1MR5A 1X2JA 4D52C 4G3NA 4WA5A 2HU4A 3L6VA 3SOVA 5CGJA 1CVMA 2QWJA 4NCSA 2BATA 3TI6A 4FPFA 3D12A 1RWLA 1E1AA 4L7DA 4FPEA 3S8VA 1V04A 2HQSA 4MJVA 1CQ1A 3TIAA 1INHA 3VNGA 1N6DA 4MZEA 4CPYA 1NMCA 2HT7A 4ASCA 3H71A 4ZLRA 3NO0A 2F26A 2SIMA 4YW2A 4M3MA 4CPMA 1N6EA 1XOEA 4MWJA 1B9TA 2XZJA 4WA3A 2HTQA 2OJHA 2IARA 1IVEA 1MZ6A 2IAWA 2YA6A 2F0ZA 2JKBA 3H6JA 4DGRA 2DG0A 5EO8A 1K32A 4GB1A 4AH4A 3SILA 1W8NA 3Q6PA 2YA8A 2W20A 4IYGA 2QWIA 4XIOA 4HHQA 3SANA 4MWYA 3ZGCA 3INBA 1SNTA 5M1ZA 1W0OA 2YA7A 2SLIA 2VSKA 1L7FA 2F13A 2QWHA 2YA4A 1W21A 1SLIA 4K1JA 2BF6A 1SO7A 4XHXA 4HZWA 2FHRA 4MZAA 4CH9A 4XMBA 4K1KA 1EUUA 2QWFA 4GNAA 1ZGKA 3K36A 2ZB6A 4MJUA 3SOQA 4C1YA 5GX5A 1IVCA 2HTRA 4GZTA 2RKCA 1A14N 4YZ3A 4FZHA 4HW6A 1H6LA 4XOGA 3B7EA 3S8ZA 4HZXA 4O5SA 1NCBN 4CPZA 4D4UA 2CMLA 1N1VA 1S0IA 2QWCA 4GDJA 1MS8A 2VAQA 4YZ5A 1IVDA 1W1XA 2HT5A 4M4UA 5HUKA 4QN5A 2BZDA 4H53A 4KS3A 4XMIA 2F10A 4R40A 1V0FA 3SREA 4NN9A 1W8OA 4X4AA 5FNQA 4FJ6A 2AGSA 3V1SA 2P4OA 4XJZA 3IAXA 2IAPA 2AH2A 1F8EA 2DSOA 3ADEA 3LI5A 1N1TA 3JU4A 7NN9A 1QLGA 2IAXA 4HZVA
chains in the Genus database with same CATH topology
4IFJA 3II7A 5FNTA 3WN7A 3VNHA 3ZGDA 2FLUX 2ZZKA 4CH9A 1U6DX 4XMBA 4L7DA 2WOZA 1ZGKA 2ZW9A 4IFNX 5FNSA 5FZJA 2XN4A 2ZWAA 2DYHA 4ZY3A 4L7BA 4IN4A 5FNQA 3VNGA 4IQKA 1X2RA 5FNUA 4ASCA 5FNRA 4ZGCA 4YY8A 5FZNA 3ZGCA 3WDZA 1X2JA 4CHBA 2VPJA 3ADEA 4IFLX 4N1BA 4L7CA 5F72C 2Z32A 5CGJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4IFJ A;  3II7 A;  5FNT A;  3WN7 A;  3VNH A;  3ZGD A;  2FLU X;  2ZZK A;  4CH9 A;  1U6D X;  4XMB A;  4L7D A;  2WOZ A;  1ZGK A;  2ZW9 A;  4IFN X;  5FNS A;  5FZJ A;  2XN4 A;  2ZWA A;  2DYH A;  4ZY3 A;  4L7B A;  4IN4 A;  5FNQ A;  3VNG A;  4IQK A;  1X2R A;  5FNU A;  4ASC A;  5FNR A;  4ZGC A;  4YY8 A;  5FZN A;  3ZGC A;  3WDZ A;  1X2J A;  4CHB A;  2VPJ A;  3ADE A;  4IFL X;  4N1B A;  4L7C A;  5F72 C;  2Z32 A;  5CGJ A; 
#chains in the Genus database with same CATH topology
 2W5N A;  3K38 A;  4FPC A;  3WN7 A;  2IAT A;  2VK5 A;  4C1Y B;  1EUT A;  3H72 A;  1NNC A;  2FP8 A;  2IAS A;  2VK7 A;  3TI5 A;  1V0E A;  4MX0 A;  5B2C A;  3I1C A;  1INW A;  4MWX A;  4HZY A;  4YW5 A;  1NNB A;  4QNP A;  2QWB A;  3WDZ A;  3W09 A;  4WEF A;  4FOW A;  2SIL A;  2GVW A;  2QWE A;  4FPJ A;  5F72 C;  1E8T A;  1V0Z A;  2GVX A;  2QWA A;  2W8B A;  5NN9 A;  3G4H A;  3AMR A;  4Q1U A;  3ZGD A;  2FLU X;  1VCJ A;  3SOB B;  2AEQ A;  2WOZ A;  4FOY A;  2IAQ A;  4AHA A;  4MWV A;  5HUG A;  3UC1 A;  4O5T A;  2VWD A;  3SAL A;  2GVU A;  1Q7F A;  3G4E A;  4QN6 A;  4FP2 A;  4IQK A;  1Z4X A;  2QE8 A;  1X2R A;  4D8S A;  1NPE A;  4B7J A;  4WEG A;  1WP5 A;  4YW1 A;  1PJX A;  2VPJ A;  4M4N A;  1N1S A;  4D52 A;  4CPO A;  1KIT A;  4CPL A;  5JYY A;  3SLI A;  4MWQ A;  5B2D A;  1NMB N;  4YW4 A;  1E8U A;  2F25 A;  2G8S A;  3A72 A;  4UOU A;  4IFN X;  3V64 C;  1USX A;  3CL2 A;  4GEZ A;  3H73 A;  1OFZ A;  4GN8 A;  2A75 A;  3OPZ A;  5FNU A;  4A0P A;  4JF7 A;  2GHS A;  3K3A A;  4MC7 A;  2HTW A;  2W8B B;  2IAU A;  4FPL A;  2W38 A;  1IVF A;  3CL0 A;  4Q6K A;  2H2N A;  2XZK A;  1CRZ A;  1SUU A;  1W0P A;  3FVZ A;  5EO7 A;  4X49 A;  2VW0 A;  4K1H A;  2X9M A;  2F24 A;  4XJA A;  4B7Q A;  4B7R A;  2POO A;  1QBI A;  5F9T A;  2DYH A;  4PWZ A;  4ZY3 A;  4FPO B;  1MS1 A;  4D52 B;  1NN2 A;  3DAS A;  1CRU A;  1Z4V A;  3D11 A;  4GZS A;  4B7N A;  4GZP A;  1N6F A;  5D9C A;  3KGG A;  1C5K A;  3VNH A;  4YW3 A;  4WA4 A;  1DIL A;  4XJ9 A;  3HLH A;  5FNS A;  4GN7 A;  3GVJ A;  1RWI A;  4K3Y A;  3T1E A;  3WW9 A;  4B7M A;  3GVK A;  2QWG A;  3TI3 A;  3S94 A;  4NC5 A;  2IVZ A;  2ZB5 A;  4XYX A;  4XIK A;  1INF A;  1INY A;  5GX1 A;  4XE9 A;  4KS1 A;  2VVZ A;  5HUN A;  2BER A;  2ISM A;  4UF7 A;  2VK6 A;  1IVB A;  4JML A;  2YDT A;  1F8C A;  4XMA A;  3O9J A;  1WCQ A;  4IN4 A;  4FOV A;  3K39 A;  1NCD N;  3NN9 A;  1MS5 A;  3CKZ A;  3CYE A;  4ZGC A;  1WCS A;  4H52 A;  1MZ5 A;  5HUM A;  4KS5 A;  1V3E A;  1NSB A;  1SLL A;  1NMA N;  2F11 A;  4XJ8 A;  4BBW A;  1USR A;  1BJI A;  3B69 A;  4FPY A;  4MWL A;  3O9K A;  4FVK A;  2QWK A;  4GDI A;  1V3B A;  4L7B A;  4SLI A;  2V91 A;  4HZZ A;  1VCU A;  1IJQ A;  1DIM A;  5GX2 A;  4XJR A;  2FPB A;  4AGI A;  1MS4 A;  1NSD A;  4GZQ A;  4XHB A;  1IUB A;  2GVV A;  4L7C A;  4X6K A;  2B8H A;  4HHO A;  3HLI A;  1MS0 A;  2IAV A;  4K1I A;  2IAO A;  4MWR A;  4DG6 A;  3II7 A;  3NSS A;  4FPH A;  1F8B A;  4FPK A;  3KYA A;  3GVL A;  1Z4Z A;  2ZWA A;  3E5Z A;  1L7H A;  3A71 A;  4XJQ A;  1INX A;  4GZW A;  2HT8 A;  1NCC N;  3FW0 A;  4XJW A;  4AGT A;  5FZN A;  2F12 A;  4GN9 A;  2C4L A;  1INV A;  4IFL X;  1IVG A;  3TIB A;  5EX7 A;  3BYC A;  1Z4Y A;  1IUC A;  4YY8 A;  1E8V A;  1EUS A;  4MWU A;  4CPN A;  4YZ4 A;  2ZZK A;  3P5B L;  4KS2 A;  1A4G A;  1B9S A;  1V3D A;  4GJT A;  4XJU A;  5FZJ A;  2C4A A;  2AEP A;  3V65 B;  4I00 A;  1C9U A;  1S1D A;  3DR2 A;  4QN7 A;  5FWW A;  3TI4 A;  3AMS A;  1NNA A;  4FPG A;  2F28 A;  4CHB A;  4N1B A;  3A9H A;  5HX0 A;  1N7D A;  3O4P A;  4XIL A;  2F29 A;  3SRG A;  1U6D X;  4GNC A;  3HRP A;  2VW1 A;  2XCY A;  3PJQ A;  2XN4 A;  3Q6T A;  4YZ1 A;  5GX4 A;  5GTQ A;  1MWE A;  1POO A;  4KS4 A;  1XOG A;  1L7G A;  1Z4W A;  1ZI0 A;  3ALX A;  5GX3 A;  3Q6K A;  2QWD A;  3U0S A;  3A9G A;  2HU0 A;  1A4Q A;  2W5O A;  4CSD A;  2HTY A;  3BEQ A;  1N1Y A;  2Z32 A;  4QN4 A;  4IFJ A;  6NN9 A;  4QN3 A;  2VW2 A;  1NSC A;  3LI3 A;  4YZ2 A;  2XZI A;  1F8D A;  2FP9 A;  2YDP A;  2F27 A;  5D9B A;  1S18 A;  1V2I A;  1Z50 A;  4IMB A;  1EUR A;  3K37 A;  1MS9 A;  4M4V A;  3TC9 A;  2YA5 A;  5D9D A;  4X47 A;  2VSM A;  3TI8 A;  4GNB A;  4GZO A;  1B9V A;  1W20 A;  2H2U A;  3LI4 A;  5FNT A;  4MWW A;  4FP3 A;  2FPC A;  2HTV A;  3S2K A;  4FOQ A;  2ZW9 A;  4J9T A;  2HTU A;  1NCA N;  3ALW A;  3WWA A;  1V3C A;  3TIC A;  1MS3 A;  5FNR A;  4GZX A;  4HIZ A;  5H47 A;  4FQ4 A;  2DG1 A;  1ING A;  1S0J A;  1MR5 A;  1X2J A;  4D52 C;  4G3N A;  4WA5 A;  2HU4 A;  3L6V A;  3SOV A;  5CGJ A;  1CVM A;  2QWJ A;  4NCS A;  2BAT A;  3TI6 A;  4FPF A;  3D12 A;  1RWL A;  1E1A A;  4L7D A;  4FPE A;  3S8V A;  1V04 A;  2HQS A;  4MJV A;  1CQ1 A;  3TIA A;  1INH A;  3VNG A;  1N6D A;  4MZE A;  4CPY A;  1NMC A;  2HT7 A;  4ASC A;  3H71 A;  4ZLR A;  3NO0 A;  2F26 A;  2SIM A;  4YW2 A;  4M3M A;  4CPM A;  1N6E A;  1XOE A;  4MWJ A;  1B9T A;  2XZJ A;  4WA3 A;  2HTQ A;  2OJH A;  2IAR A;  1IVE A;  1MZ6 A;  2IAW A;  2YA6 A;  2F0Z A;  2JKB A;  3H6J A;  4DGR A;  2DG0 A;  5EO8 A;  1K32 A;  4GB1 A;  4AH4 A;  3SIL A;  1W8N A;  3Q6P A;  2YA8 A;  2W20 A;  4IYG A;  2QWI A;  4XIO A;  4HHQ A;  3SAN A;  4MWY A;  3ZGC A;  3INB A;  1SNT A;  5M1Z A;  1W0O A;  2YA7 A;  2SLI A;  2VSK A;  1L7F A;  2F13 A;  2QWH A;  2YA4 A;  1W21 A;  1SLI A;  4K1J A;  2BF6 A;  1SO7 A;  4XHX A;  4HZW A;  2FHR A;  4MZA A;  4CH9 A;  4XMB A;  4K1K A;  1EUU A;  2QWF A;  4GNA A;  1ZGK A;  3K36 A;  2ZB6 A;  4MJU A;  3SOQ A;  4C1Y A;  5GX5 A;  1IVC A;  2HTR A;  4GZT A;  2RKC A;  1A14 N;  4YZ3 A;  4FZH A;  4HW6 A;  1H6L A;  4XOG A;  3B7E A;  3S8Z A;  4HZX A;  4O5S A;  1NCB N;  4CPZ A;  4D4U A;  2CML A;  1N1V A;  1S0I A;  2QWC A;  4GDJ A;  1MS8 A;  2VAQ A;  4YZ5 A;  1IVD A;  1W1X A;  2HT5 A;  4M4U A;  5HUK A;  4QN5 A;  2BZD A;  4H53 A;  4KS3 A;  4XMI A;  2F10 A;  4R40 A;  1V0F A;  3SRE A;  4NN9 A;  1W8O A;  4X4A A;  5FNQ A;  4FJ6 A;  2AGS A;  3V1S A;  2P4O A;  4XJZ A;  3IAX A;  2IAP A;  2AH2 A;  1F8E A;  2DSO A;  3ADE A;  3LI5 A;  1N1T A;  3JU4 A;  7NN9 A;  1QLG A;  2IAX A;  4HZV A; 
#chains in the Genus database with same CATH homology
 4IFJ A;  3II7 A;  5FNT A;  3WN7 A;  3VNH A;  3ZGD A;  2FLU X;  2ZZK A;  4CH9 A;  1U6D X;  4XMB A;  4L7D A;  2WOZ A;  1ZGK A;  2ZW9 A;  4IFN X;  5FNS A;  5FZJ A;  2XN4 A;  2ZWA A;  2DYH A;  4ZY3 A;  4L7B A;  4IN4 A;  5FNQ A;  3VNG A;  4IQK A;  1X2R A;  5FNU A;  4ASC A;  5FNR A;  4ZGC A;  4YY8 A;  5FZN A;  3ZGC A;  3WDZ A;  1X2J A;  4CHB A;  2VPJ A;  3ADE A;  4IFL X;  4N1B A;  4L7C A;  5F72 C;  2Z32 A;  5CGJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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