4C1Y | Genus

Total Genus 73

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	73
sequence length	314
structure length	313
Chain Sequence	STPGAQQVLFRTGIAAVNSTNHLRVYFQDVYGSIRESLYEGSWANGTEKNVIGNAKLGSPVAATSKELKHIRVYTLTEGNTLQEFAYDSGTGWYNGGLGGAKFQVAPYSCIAAVFLAGTDALQLRIYAQKPDNTIQEYMWNGDGWKEGTNLGGALPGTGIGATSFRYTDYNGPSIRIWFQTDDLKLVQRAYDPHKGWYPDLVTIFDRAPPRTAIAATSFGAGNSSIYMRIYFVNSDNTIWQVWDHGKGYHDKGTITPVIQGSEVAIISWGSFANNGPDLRLYFQNGTYISAVSEWVWNRAHGSQLGRSALPPA

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Sugar binding protein
source organism	Aspergillus fumigatus
publication title	Structural Insights Into Aspergillus Fumigatus Lectin Specificity: Afl Binding Sites are Functionally Non-Equivalent. pubmed doi rcsb
molecule keywords	FUCOSE-SPECIFIC LECTIN FLEA
total genus	73
structure length	313
sequence length	314
ec nomenclature
pdb deposition date	2013-08-14

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF07938	Fungal_lectin	Fungal fucose-specific lectin

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.120.10.70	Mainly Beta	6 Propeller	Neuraminidase	Fucose-specific lectin	4c1yA00

4AGTA 5EO8A 4AHAA 4D52C 4D52B 4UOUA 4CSDA 1IUBA 1OFZA 5H47A 4AGIA 4D52A 4D4UA 4C1YB 4C1YA 4AH4A 5EO7A 1IUCA
chains in the Genus database with same CATH superfamily

1L7FA 3A9GA 2QWCA 4GN9A 4MWJA 5HX0A 2IASA 4UOUA 3VNGA 2GVWA 2G8SA 4C1YA 4GZSA 3L6VA 3NO0A 4M4UA 3A71A 1MS0A 2H2UA 4AGIA 4K1JA 4D52A 4O5SA 4M3MA 1NMBN 1F8BA 2VSMA 1F8DA 3A72A 2CMLA 3GVKA 3B69A 1V04A 4XJWA 4XJAA 1NMAN 1CQ1A 3TICA 3V1SA 2JKBA 2QWJA 3TI8A 2HTRA 4GB1A 1N6FA 2W8BA 1BJIA 4J9TA 4MJVA 3V65B 1NNCA 4GJTA 3E5ZA 2IAUA 2B8HA 4GZTA 1NN2A 1V0FA 3CYEA 3SLIA 1MS1A 1INVA 3ADEA 4KS2A 1C5KA 4I00A 3I1CA 1W8OA 3LI3A 4X49A 5HUMA 3Q6PA 1USRA 2W5NA 2SILA 3LI5A 2P4OA 1NSDA 4C1YB 4X4AA 5CGJA 3ZGCA 2A75A 1DIMA 2YDPA 4D52B 1E8UA 3H71A 4A0PA 1Z4XA 4ZLRA 1NCCN 3ALXA 5FNQA 4K1HA 4H53A 1Z4YA 3SOQA 4NCSA 3HLHA 1SUUA 3JU4A 2BERA 3K37A 3LI4A 2YA7A 1W0PA 4B7JA 4XOGA 4K1IA 1W8NA 2W8BB 1S1DA 1NCDN 2YA8A 4JF7A 1Z4ZA 7NN9A 4FZHA 2AH2A 4R40A 3K38A 2HU0A 1N1TA 1W1XA 2IAQA 4HZYA 4HHQA 3OPZA 1SLLA 2F11A 4YZ4A 2QWAA 4XIOA 3U0SA 4XHXA 1N1SA 1NNBA 1XOGA 2VK7A 2VSKA 4MZAA 3V64C 2FPBA 3TI3A 5D9BA 5B2DA 4FOVA 2XCYA 4HW6A 3ALWA 4BBWA 2C4LA 2VVZA 1WP5A 5GX3A 4G3NA 2HTWA 1IVBA 3D12A 1E8TA 3WN7A 4IMBA 1QBIA 1ZGKA 3CL0A 3GVJA 4ZGCA 3SANA 4JMLA 3S2KA 4FPJA 2F28A 4XE9A 4YZ3A 4L7BA 3AMSA 5F72C 3FW0A 3TI6A 5F9TA 3WW9A 1V3EA 2ZB6A 4HZZA 4GZXA 4H52A 5GX2A 1N1VA 3SRGA 3Q6KA 1XOEA 1V3DA 2IAVA 4FPEA 5FZJA 2HU4A 4MX0A 1X2JA 1IVFA 2VK5A 3SILA 1NMCA 4O5TA 2AEQA 1F8EA 4HZVA 3UC1A 4AGTA 1INGA 4MJUA 4XJ8A 4YW1A 2F29A 4GEZA 4KS3A 2C4AA 4YZ2A 5GTQA 4XJUA 4WA4A 2F27A 2GHSA 1E8VA 3NSSA 2F12A 4MWVA 1S18A 2YDTA 4DG6A 1INWA 5NN9A 4D4UA 4HZWA 1N6DA 2WOZA 3CL2A 1IVGA 4GZOA 4GZPA 2HTQA 4XJQA 1CVMA 4B7RA 1VCUA 1W20A 4IFJA 4ZY3A 4Q1UA 4YZ1A 4QNPA 1A4QA 4DGRA 1A4GA 1MS9A 1L7HA 1N1YA 4FPYA 3Q6TA 2SIMA 2HTVA 5FWWA 4HIZA 1NPEA 1WCQA 1C9UA 4FOQA 5FZNA 3K3AA 1IVCA 3TC9A 1OFZA 3H73A 3ZGDA 5EO7A 1IJQA 1V3BA 2Z32A 4CPMA 4L7CA 4QN5A 2AEPA 2VW2A 2XN4A 3CKZA 4ASCA 4D52C 2QE8A 1K32A 2QWGA 3P5BL 4IYGA 2W38A 4CHBA 4GDJA 1MWEA 2VPJA 1INXA 2DG1A 4HZXA 4GDIA 4WA3A 4CPLA 1DILA 4GNBA 5FNRA 2BATA 3II7A 2H2NA 2HTUA 2BF6A 4FOWA 4YY8A 4QN4A 2ZWAA 2GVXA 2IARA 4MWWA 3HRPA 3G4EA 4N1BA 4L7DA 4Q6KA 4B7QA 3SOVA 2FHRA 4IFLX 4MWXA 1W21A 2F26A 3AMRA 5GX4A 2HQSA 2AGSA 3O9JA 4MWQA 2W20A 2HT5A 4FOYA 1NCBN 5GX1A 1EUTA 1NCAN 2FP9A 2W5OA 1N6EA 2IAWA 4MC7A 4GZQA 4YW5A 1B9TA 4FPGA 1KITA 4WEGA 3TIBA 1MZ5A 4M4VA 4CPZA 1NSCA 3T1EA 2DG0A 2F24A 4WEFA 5HUNA 4YW2A 2QWEA 1IUCA 2HT7A 2QWBA 4KS1A 1NSBA 2BZDA 2RKCA 1E1AA 3K36A 4NC5A 1H6LA 1POOA 4XMAA 3WWAA 5D9DA 4XJZA 4AHAA 5D9CA 4QN7A 1EUUA 4QN3A 1MR5A 4X6KA 2ZB5A 1V3CA 1INFA 3SALA 4SLIA 2F10A 2OJHA 4GNCA 2QWHA 5FNUA 3O4PA 3O9KA 1S0JA 2HT8A 2QWFA 3NN9A 4GN7A 1SLIA 5EO8A 4MWLA 1SNTA 1IVEA 4MWRA 4FQ4A 3KGGA 4XJ9A 2FLUX 5HUGA 2XZJA 3K39A 3IAXA 4GZWA 4KS4A 4CPYA 4B7NA 1W0OA 1QLGA 1USXA 3HLIA 4GNAA 4FPHA 4XYXA 4FPFA 4MWYA 4AH4A 2XZIA 4IFNX 2XZKA 4XILA 4IN4A 2IAXA 2ISMA 4IQKA 3FVZA 1EUSA 2ZW9A 3KYAA 1V0ZA 2IAPA 4UF7A 1IVDA 2IVZA 5EX7A 1MS4A 1MZ6A 1S0IA 5FNSA 2POOA 1RWIA 2DYHA 3S94A 2QWDA 2HTYA 4MZEA 1F8CA 2F0ZA 1ZI0A 5GX5A 4XIKA 4KS5A 1CRZA 3W09A 1L7GA 4FPLA 2FPCA 2ZZKA 3S8VA 6NN9A 1MS3A 3PJQA 4CSDA 1A14N 3INBA 3B7EA 1IUBA 4MWUA 5JYYA 4FP2A 3DR2A 3TI4A 3GVLA 1RWLA 4XMBA 1Q7FA 1NNAA 3G4HA 5HUKA 2YA4A 2VWDA 4QN6A 4FJ6A 1PJXA 1X2RA 1N7DA 1EURA 4HHOA 5M1ZA 3SREA 3BEQA 3SOBB 1B9VA 4FVKA 1B9SA 4FPOB 4GN8A 2QWKA 4B7MA 2IATA 4CPNA 4FP3A 1WCSA 2F25A 3WDZA 4YZ5A 4YW4A 3TI5A 3D11A 4X47A 2GVUA 2VAQA 2X9MA 1MS8A 4K3YA 2YA6A 2GVVA 2VW0A 4PWZA 3A9HA 4CH9A 4D8SA 1CRUA 4XHBA 4M4NA 2VW1A 2V91A 3TIAA 2FP8A 5FNTA 2QWIA 4XMIA 3BYCA 4WA5A 3H72A 5H47A 2SLIA 4CPOA 3VNHA 2IAOA 3H6JA 3DASA 1V0EA 4FPCA 4XJRA 1Z4WA 1INYA 1INHA 2F13A 4K1KA 1VCJA 1U6DX 1SO7A 4NN9A 2DSOA 4FPKA 5B2CA 1V2IA 2YA5A 1MS5A 1Z50A 4YW3A 1Z4VA 2VK6A 3S8ZA
chains in the Genus database with same CATH topology

4AGTA 5EO8A 4AHAA 4D52C 4D52B 4UOUA 4CSDA 1IUBA 1OFZA 5H47A 4AGIA 4D52A 4D4UA 4C1YB 4C1YA 4AH4A 5EO7A 1IUCA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4AGT A;  5EO8 A;  4AHA A;  4D52 C;  4D52 B;  4UOU A;  4CSD A;  1IUB A;  1OFZ A;  5H47 A;  4AGI A;  4D52 A;  4D4U A;  4C1Y B;  4C1Y A;  4AH4 A;  5EO7 A;  1IUC A; 
#chains in the Genus database with same CATH topology
 1L7F A;  3A9G A;  2QWC A;  4GN9 A;  4MWJ A;  5HX0 A;  2IAS A;  4UOU A;  3VNG A;  2GVW A;  2G8S A;  4C1Y A;  4GZS A;  3L6V A;  3NO0 A;  4M4U A;  3A71 A;  1MS0 A;  2H2U A;  4AGI A;  4K1J A;  4D52 A;  4O5S A;  4M3M A;  1NMB N;  1F8B A;  2VSM A;  1F8D A;  3A72 A;  2CML A;  3GVK A;  3B69 A;  1V04 A;  4XJW A;  4XJA A;  1NMA N;  1CQ1 A;  3TIC A;  3V1S A;  2JKB A;  2QWJ A;  3TI8 A;  2HTR A;  4GB1 A;  1N6F A;  2W8B A;  1BJI A;  4J9T A;  4MJV A;  3V65 B;  1NNC A;  4GJT A;  3E5Z A;  2IAU A;  2B8H A;  4GZT A;  1NN2 A;  1V0F A;  3CYE A;  3SLI A;  1MS1 A;  1INV A;  3ADE A;  4KS2 A;  1C5K A;  4I00 A;  3I1C A;  1W8O A;  3LI3 A;  4X49 A;  5HUM A;  3Q6P A;  1USR A;  2W5N A;  2SIL A;  3LI5 A;  2P4O A;  1NSD A;  4C1Y B;  4X4A A;  5CGJ A;  3ZGC A;  2A75 A;  1DIM A;  2YDP A;  4D52 B;  1E8U A;  3H71 A;  4A0P A;  1Z4X A;  4ZLR A;  1NCC N;  3ALX A;  5FNQ A;  4K1H A;  4H53 A;  1Z4Y A;  3SOQ A;  4NCS A;  3HLH A;  1SUU A;  3JU4 A;  2BER A;  3K37 A;  3LI4 A;  2YA7 A;  1W0P A;  4B7J A;  4XOG A;  4K1I A;  1W8N A;  2W8B B;  1S1D A;  1NCD N;  2YA8 A;  4JF7 A;  1Z4Z A;  7NN9 A;  4FZH A;  2AH2 A;  4R40 A;  3K38 A;  2HU0 A;  1N1T A;  1W1X A;  2IAQ A;  4HZY A;  4HHQ A;  3OPZ A;  1SLL A;  2F11 A;  4YZ4 A;  2QWA A;  4XIO A;  3U0S A;  4XHX A;  1N1S A;  1NNB A;  1XOG A;  2VK7 A;  2VSK A;  4MZA A;  3V64 C;  2FPB A;  3TI3 A;  5D9B A;  5B2D A;  4FOV A;  2XCY A;  4HW6 A;  3ALW A;  4BBW A;  2C4L A;  2VVZ A;  1WP5 A;  5GX3 A;  4G3N A;  2HTW A;  1IVB A;  3D12 A;  1E8T A;  3WN7 A;  4IMB A;  1QBI A;  1ZGK A;  3CL0 A;  3GVJ A;  4ZGC A;  3SAN A;  4JML A;  3S2K A;  4FPJ A;  2F28 A;  4XE9 A;  4YZ3 A;  4L7B A;  3AMS A;  5F72 C;  3FW0 A;  3TI6 A;  5F9T A;  3WW9 A;  1V3E A;  2ZB6 A;  4HZZ A;  4GZX A;  4H52 A;  5GX2 A;  1N1V A;  3SRG A;  3Q6K A;  1XOE A;  1V3D A;  2IAV A;  4FPE A;  5FZJ A;  2HU4 A;  4MX0 A;  1X2J A;  1IVF A;  2VK5 A;  3SIL A;  1NMC A;  4O5T A;  2AEQ A;  1F8E A;  4HZV A;  3UC1 A;  4AGT A;  1ING A;  4MJU A;  4XJ8 A;  4YW1 A;  2F29 A;  4GEZ A;  4KS3 A;  2C4A A;  4YZ2 A;  5GTQ A;  4XJU A;  4WA4 A;  2F27 A;  2GHS A;  1E8V A;  3NSS A;  2F12 A;  4MWV A;  1S18 A;  2YDT A;  4DG6 A;  1INW A;  5NN9 A;  4D4U A;  4HZW A;  1N6D A;  2WOZ A;  3CL2 A;  1IVG A;  4GZO A;  4GZP A;  2HTQ A;  4XJQ A;  1CVM A;  4B7R A;  1VCU A;  1W20 A;  4IFJ A;  4ZY3 A;  4Q1U A;  4YZ1 A;  4QNP A;  1A4Q A;  4DGR A;  1A4G A;  1MS9 A;  1L7H A;  1N1Y A;  4FPY A;  3Q6T A;  2SIM A;  2HTV A;  5FWW A;  4HIZ A;  1NPE A;  1WCQ A;  1C9U A;  4FOQ A;  5FZN A;  3K3A A;  1IVC A;  3TC9 A;  1OFZ A;  3H73 A;  3ZGD A;  5EO7 A;  1IJQ A;  1V3B A;  2Z32 A;  4CPM A;  4L7C A;  4QN5 A;  2AEP A;  2VW2 A;  2XN4 A;  3CKZ A;  4ASC A;  4D52 C;  2QE8 A;  1K32 A;  2QWG A;  3P5B L;  4IYG A;  2W38 A;  4CHB A;  4GDJ A;  1MWE A;  2VPJ A;  1INX A;  2DG1 A;  4HZX A;  4GDI A;  4WA3 A;  4CPL A;  1DIL A;  4GNB A;  5FNR A;  2BAT A;  3II7 A;  2H2N A;  2HTU A;  2BF6 A;  4FOW A;  4YY8 A;  4QN4 A;  2ZWA A;  2GVX A;  2IAR A;  4MWW A;  3HRP A;  3G4E A;  4N1B A;  4L7D A;  4Q6K A;  4B7Q A;  3SOV A;  2FHR A;  4IFL X;  4MWX A;  1W21 A;  2F26 A;  3AMR A;  5GX4 A;  2HQS A;  2AGS A;  3O9J A;  4MWQ A;  2W20 A;  2HT5 A;  4FOY A;  1NCB N;  5GX1 A;  1EUT A;  1NCA N;  2FP9 A;  2W5O A;  1N6E A;  2IAW A;  4MC7 A;  4GZQ A;  4YW5 A;  1B9T A;  4FPG A;  1KIT A;  4WEG A;  3TIB A;  1MZ5 A;  4M4V A;  4CPZ A;  1NSC A;  3T1E A;  2DG0 A;  2F24 A;  4WEF A;  5HUN A;  4YW2 A;  2QWE A;  1IUC A;  2HT7 A;  2QWB A;  4KS1 A;  1NSB A;  2BZD A;  2RKC A;  1E1A A;  3K36 A;  4NC5 A;  1H6L A;  1POO A;  4XMA A;  3WWA A;  5D9D A;  4XJZ A;  4AHA A;  5D9C A;  4QN7 A;  1EUU A;  4QN3 A;  1MR5 A;  4X6K A;  2ZB5 A;  1V3C A;  1INF A;  3SAL A;  4SLI A;  2F10 A;  2OJH A;  4GNC A;  2QWH A;  5FNU A;  3O4P A;  3O9K A;  1S0J A;  2HT8 A;  2QWF A;  3NN9 A;  4GN7 A;  1SLI A;  5EO8 A;  4MWL A;  1SNT A;  1IVE A;  4MWR A;  4FQ4 A;  3KGG A;  4XJ9 A;  2FLU X;  5HUG A;  2XZJ A;  3K39 A;  3IAX A;  4GZW A;  4KS4 A;  4CPY A;  4B7N A;  1W0O A;  1QLG A;  1USX A;  3HLI A;  4GNA A;  4FPH A;  4XYX A;  4FPF A;  4MWY A;  4AH4 A;  2XZI A;  4IFN X;  2XZK A;  4XIL A;  4IN4 A;  2IAX A;  2ISM A;  4IQK A;  3FVZ A;  1EUS A;  2ZW9 A;  3KYA A;  1V0Z A;  2IAP A;  4UF7 A;  1IVD A;  2IVZ A;  5EX7 A;  1MS4 A;  1MZ6 A;  1S0I A;  5FNS A;  2POO A;  1RWI A;  2DYH A;  3S94 A;  2QWD A;  2HTY A;  4MZE A;  1F8C A;  2F0Z A;  1ZI0 A;  5GX5 A;  4XIK A;  4KS5 A;  1CRZ A;  3W09 A;  1L7G A;  4FPL A;  2FPC A;  2ZZK A;  3S8V A;  6NN9 A;  1MS3 A;  3PJQ A;  4CSD A;  1A14 N;  3INB A;  3B7E A;  1IUB A;  4MWU A;  5JYY A;  4FP2 A;  3DR2 A;  3TI4 A;  3GVL A;  1RWL A;  4XMB A;  1Q7F A;  1NNA A;  3G4H A;  5HUK A;  2YA4 A;  2VWD A;  4QN6 A;  4FJ6 A;  1PJX A;  1X2R A;  1N7D A;  1EUR A;  4HHO A;  5M1Z A;  3SRE A;  3BEQ A;  3SOB B;  1B9V A;  4FVK A;  1B9S A;  4FPO B;  4GN8 A;  2QWK A;  4B7M A;  2IAT A;  4CPN A;  4FP3 A;  1WCS A;  2F25 A;  3WDZ A;  4YZ5 A;  4YW4 A;  3TI5 A;  3D11 A;  4X47 A;  2GVU A;  2VAQ A;  2X9M A;  1MS8 A;  4K3Y A;  2YA6 A;  2GVV A;  2VW0 A;  4PWZ A;  3A9H A;  4CH9 A;  4D8S A;  1CRU A;  4XHB A;  4M4N A;  2VW1 A;  2V91 A;  3TIA A;  2FP8 A;  5FNT A;  2QWI A;  4XMI A;  3BYC A;  4WA5 A;  3H72 A;  5H47 A;  2SLI A;  4CPO A;  3VNH A;  2IAO A;  3H6J A;  3DAS A;  1V0E A;  4FPC A;  4XJR A;  1Z4W A;  1INY A;  1INH A;  2F13 A;  4K1K A;  1VCJ A;  1U6D X;  1SO7 A;  4NN9 A;  2DSO A;  4FPK A;  5B2C A;  1V2I A;  2YA5 A;  1MS5 A;  1Z50 A;  4YW3 A;  1Z4V A;  2VK6 A;  3S8Z A; 
#chains in the Genus database with same CATH homology
 4AGT A;  5EO8 A;  4AHA A;  4D52 C;  4D52 B;  4UOU A;  4CSD A;  1IUB A;  1OFZ A;  5H47 A;  4AGI A;  4D52 A;  4D4U A;  4C1Y B;  4C1Y A;  4AH4 A;  5EO7 A;  1IUC A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4C1YA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations