4D52A

Crystal structure of fucose binding lectin from aspergillus fumigatus (afl) in complex with l-galactopyranose.
Total Genus 79
5010015020025030001020304050607080
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
79
sequence length
314
structure length
314
Chain Sequence
STPGAQQVLFRTGIAAVNSTNHLRVYFQDVYGSIRESLYEGSWANGTEKNVIGNAKLGSPVAATSKELKHIRVYTLTEGNTLQEFAYDSGTGWYNGGLGGAKFQVAPYSCIAAVFLAGTDALQLRIYAQKPDNTIQEYMWNGDGWKEGTNLGGALPGTGIGATSFRYTDYNGPSIRIWFQTDDLKLVQRAYDPHKGWYPDLVTIFDRAPPRTAIAATSFGAGNSSIYMRIYFVNSDNTIWQVCWDHGKGYHDKGTITPVIQGSEVAIISWGSFANNGPDLRLYFQNGTYISAVSEWVWNRAHGSQLGRSALPPA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTY3H1 (4-8)TIV15 (288-291)TI1 (30-33)S3 (34-40)TII1 (10-13)TII9 (261-264)S23 (276-286)S2 (23-29)S1 (15-20)S22 (266-273)TIV1 (19-22)S6 (62-67)TII2 (57-60)S5 (52-55)TI2 (48-51)TVIII4 (309-312)TIV2 (40-43)S8 (82-89)S7 (71-78)S10 (112-116)TIV4 (66-69)TII'2 (67-70)3H2 (98-102)S9 (93-96)TI5 (107-110)TI6 (131-134)S11 (125-130)TII5 (156-159)TVIII2 (120-123)S14 (161-166)TII4 (117-120)S12 (135-141)S13 (146-154)S16 (187-193)S15 (175-181)TII6 (210-213)S18 (215-223)TI7 (168-171)TII7 (223-226)S21 (250-259)TI8 (182-185)TVIII3 (206-209)S19 (226-235)TI10 (235-238)S20 (239-246)TI11 (273-276)S24 (294-300)TIV16 (289-292)TIV17 (290-293)S25 (304-308)TIV18 (300-303)TI4 (78-81)TII3 (89-92)S17 (197-206)TI9 (193-196)TII8 (246-249)S4 (44-46)Updating...
connected with : NaN
molecule tags Sugar binding protein
source organism Aspergillus fumigatus
publication title Structural Insights Into Aspergillus Fumigatus Lectin Specificity: Afl Binding Sites are Functionally Non-Equivalent.
pubmed doi rcsb
molecule keywords FUCOSE-SPECIFIC LECTIN FLEA
total genus 79
structure length 314
sequence length 314
ec nomenclature
pdb deposition date 2014-11-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07938 Fungal_lectin Fungal fucose-specific lectin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.120.10.70 Mainly Beta 6 Propeller Neuraminidase Fucose-specific lectin 4d52A00
4AGIA 1OFZA 4AH4A 4C1YB 4D52A 4D52C 5H47A 4C1YA 4UOUA 1IUBA 4CSDA 4AHAA 4AGTA 4D4UA 5EO8A 4D52B 5EO7A 1IUCA
chains in the Genus database with same CATH superfamily
4IMBA 1N1VA 1MWEA 2IARA 1MZ5A 1SNTA 4GN9A 1MZ6A 1W0PA 3O9KA 1L7GA 4D4UA 1IVCA 4GZQA 4HZYA 4CPNA 1BJIA 2H2UA 5EX7A 2XN4A 4FOYA 1INWA 1V04A 2IASA 4XE9A 1V3BA 4FPYA 3CKZA 4XHBA 1IVGA 4X4AA 4C1YA 4FP2A 4JMLA 5FNRA 3S8ZA 3K39A 2BERA 5NN9A 4AHAA 1NPEA 1INHA 3GVJA 2HU4A 3KGGA 4FPHA 4GZOA 4MWLA 1IUBA 1N6FA 3G4EA 4ZY3A 1L7HA 4K1JA 3LI5A 4GDIA 2W20A 4IFJA 3GVKA 4IFNX 2W8BA 4MWWA 1ZGKA 1USRA 1QBIA 4XJRA 4XHXA 2C4AA 2XCYA 5FNTA 2DSOA 2P4OA 3ZGCA 3A9HA 1IJQA 1E8VA 4MJVA 1A4QA 3VNHA 3TI6A 4M4NA 4J9TA 4MWRA 4GN7A 4IFLX 3TICA 1V3CA 3WN7A 4GEZA 4UOUA 5CGJA 1MS4A 1EUUA 2YDTA 3T1EA 5HUKA 3V65B 4FPCA 1NNCA 4GN8A 4K1KA 3TIBA 3UC1A 5FNQA 4D52B 5D9BA 4QNPA 1V3EA 3I1CA 3LI4A 4QN6A 2HTUA 1N7DA 3Q6TA 2F10A 4FPKA 1EURA 4CH9A 2FLUX 4KS1A 4YW3A 4NN9A 4CPOA 4YW1A 4YZ5A 4M3MA 2F26A 2YA4A 4FP3A 4O5TA 5GX3A 4MJUA 1INVA 5HUGA 4Q1UA 3D11A 4AGIA 5HX0A 4D8SA 4B7MA 4HZZA 2VVZA 1N6EA 4FOWA 2HT5A 1NSCA 3A71A 3ADEA 4XYXA 1MS0A 1X2JA 2ZB6A 3A72A 1H6LA 4K1IA 3B7EA 3TC9A 4XJAA 1CQ1A 1Z4WA 3NSSA 4HHOA 4PWZA 4FJ6A 4GDJA 1VCJA 4MWQA 2HT7A 4YW4A 1NN2A 3ALWA 4XIKA 1N1SA 1E1AA 2HTRA 2VAQA 1PJXA 1A14N 3DASA 1A4GA 4GZXA 3W09A 1OFZA 3D12A 5FNUA 4GZPA 2QWHA 1EUTA 5FWWA 1S0IA 4N1BA 5B2DA 4FPOB 4MWJA 4YZ2A 1SLLA 2XZIA 1NMAN 1Z4XA 1USXA 3FVZA 4CPZA 2X9MA 4Q6KA 3CYEA 2DG1A 4MZAA 2F0ZA 4SLIA 3JU4A 3IAXA 4D52A 4YZ1A 5HUNA 1DILA 1INGA 2C4LA 2XZKA 4FPEA 3SILA 4FPLA 3TIAA 4WEFA 1W8NA 3H6JA 3SLIA 3CL0A 4B7RA 1SLIA 2F24A 4GNAA 4HW6A 1INYA 4YZ4A 4D52C 5HUMA 1E8UA 1N6DA 2QE8A 4FOVA 2QWDA 5F9TA 3GVLA 4KS5A 2IVZA 2VSKA 2POOA 2HQSA 4FPGA 4MWXA 2RKCA 1SO7A 4MZEA 3DR2A 4MX0A 1V3DA 1WP5A 3K36A 4L7BA 4XMAA 1U6DX 1W21A 1MS8A 4QN7A 2QWGA 3TI3A 4M4UA 5JYYA 3S2KA 2FP9A 3BEQA 2HTQA 4X6KA 3B69A 3O9JA 4X47A 4AH4A 4WEGA 1W20A 5B2CA 1INXA 3K3AA 1EUSA 4GZTA 4O5SA 4XMIA 4CPYA 3SREA 4B7NA 1W0OA 1QLGA 1NNBA 4XJWA 1MS3A 4GNBA 1B9TA 1CRZA 4HHQA 1V0EA 3AMRA 3K37A 2HTVA 2FPCA 2VSMA 3Q6PA 1NCDN 5H47A 3H71A 2VW0A 3P5BL 5GX2A 2SLIA 1WCSA 2ZB5A 4CHBA 4ZLRA 1MS9A 3VNGA 1IVFA 4FPFA 3E5ZA 3L6VA 3TI4A 1Q7FA 4FZHA 1RWLA 1V2IA 5GX4A 1INFA 2QWFA 2SILA 2BZDA 2VWDA 4GZSA 2F27A 4L7DA 3TI5A 4YY8A 4XJ9A 4HZVA 4NC5A 2GVVA 3FW0A 1IVBA 1NMCA 1S0JA 2YA7A 3SOVA 3O4PA 1F8DA 1S18A 2QWAA 1S1DA 1B9VA 2IAQA 2W5OA 4WA5A 2QWBA 1N1YA 1NCBN 1KITA 2IAUA 2VK6A 3LI3A 4JF7A 4X49A 4XJUA 3SOBB 1MS5A 1V0FA 1W8OA 3AMSA 1NNAA 1MS1A 2YA6A 2OJHA 4DGRA 2GVWA 4GNCA 2IAVA 5D9CA 2FHRA 4M4VA 2F28A 4XMBA 1V0ZA 4QN4A 5D9DA 3WW9A 2HU0A 4K1HA 1IVEA 4XJ8A 1Z4VA 2VW2A 4FVKA 2AEPA 1XOGA 2FPBA 2VK7A 1XOEA 1L7FA 4WA3A 1E8TA 2QWIA 5GTQA 3INBA 2BF6A 1F8CA 3ZGDA 3V1SA 4B7QA 2ISMA 2QWEA 2YA8A 1SUUA 4YW2A 4MWUA 4DG6A 1ZI0A 4WA4A 5EO7A 3SRGA 2CMLA 4ZGCA 3KYAA 4KS3A 1Z50A 4NCSA 2G8SA 2B8HA 3BYCA 2H2NA 3HLIA 1F8EA 2QWCA 2WOZA 1RWIA 3S8VA 4H53A 2DYHA 3V64C 1CRUA 1Z4YA 4XILA 4CPMA 3CL2A 2HTWA 4XIOA 7NN9A 1WCQA 4YZ3A 4ASCA 4I00A 2AEQA 2SIMA 2F29A 2IAPA 2HTYA 2BATA 1C9UA 2AGSA 3HRPA 4QN5A 4UF7A 3U0SA 1DIMA 4XOGA 4G3NA 2F13A 2F12A 3OPZA 2F25A 4QN3A 1N1TA 2W5NA 1NMBN 2IAWA 3WDZA 4FOQA 4YW5A 1F8BA 4AGTA 1W1XA 5FZJA 3A9GA 2IAXA 3Q6KA 2XZJA 4FQ4A 1NSBA 3SANA 1POOA 1CVMA 5EO8A 4A0PA 4C1YB 4GZWA 4KS2A 3NN9A 4L7CA 3TI8A 1NCAN 3S94A 2W38A 4IN4A 5M1ZA 4K3YA 1C5KA 1X2RA 1K32A 2IATA 4CSDA 2AH2A 5GX5A 2JKBA 2YDPA 3SALA 2VK5A 2HT8A 2YA5A 3WWAA 1NCCN 1B9SA 4IQKA 5FNSA 2V91A 5GX1A 4R40A 2FP8A 3SOQA 5F72C 2DG0A 2ZWAA 2VPJA 4XJZA 4KS4A 1VCUA 2QWJA 3H72A 1IUCA 2W8BB 2ZZKA 6NN9A 2Z32A 4B7JA 4HIZA 4IYGA 2ZW9A 3II7A 2GHSA 2GVXA 2GVUA 3PJQA 1MR5A 4MC7A 2F11A 4GJTA 4BBWA 1NSDA 4XJQA 1Z4ZA 5FZNA 4HZWA 3ALXA 4GB1A 3HLHA 2VW1A 2A75A 2IAOA 4MWVA 4FPJA 1IVDA 4HZXA 3NO0A 3K38A 3G4HA 3H73A 4H52A 4MWYA 2QWKA 4CPLA
chains in the Genus database with same CATH topology
4AGIA 1OFZA 4AH4A 4C1YB 4D52A 4D52C 5H47A 4C1YA 4UOUA 1IUBA 4CSDA 4AHAA 4AGTA 4D4UA 5EO8A 4D52B 5EO7A 1IUCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AGI A;  1OFZ A;  4AH4 A;  4C1Y B;  4D52 A;  4D52 C;  5H47 A;  4C1Y A;  4UOU A;  1IUB A;  4CSD A;  4AHA A;  4AGT A;  4D4U A;  5EO8 A;  4D52 B;  5EO7 A;  1IUC A; 
#chains in the Genus database with same CATH topology
 4IMB A;  1N1V A;  1MWE A;  2IAR A;  1MZ5 A;  1SNT A;  4GN9 A;  1MZ6 A;  1W0P A;  3O9K A;  1L7G A;  4D4U A;  1IVC A;  4GZQ A;  4HZY A;  4CPN A;  1BJI A;  2H2U A;  5EX7 A;  2XN4 A;  4FOY A;  1INW A;  1V04 A;  2IAS A;  4XE9 A;  1V3B A;  4FPY A;  3CKZ A;  4XHB A;  1IVG A;  4X4A A;  4C1Y A;  4FP2 A;  4JML A;  5FNR A;  3S8Z A;  3K39 A;  2BER A;  5NN9 A;  4AHA A;  1NPE A;  1INH A;  3GVJ A;  2HU4 A;  3KGG A;  4FPH A;  4GZO A;  4MWL A;  1IUB A;  1N6F A;  3G4E A;  4ZY3 A;  1L7H A;  4K1J A;  3LI5 A;  4GDI A;  2W20 A;  4IFJ A;  3GVK A;  4IFN X;  2W8B A;  4MWW A;  1ZGK A;  1USR A;  1QBI A;  4XJR A;  4XHX A;  2C4A A;  2XCY A;  5FNT A;  2DSO A;  2P4O A;  3ZGC A;  3A9H A;  1IJQ A;  1E8V A;  4MJV A;  1A4Q A;  3VNH A;  3TI6 A;  4M4N A;  4J9T A;  4MWR A;  4GN7 A;  4IFL X;  3TIC A;  1V3C A;  3WN7 A;  4GEZ A;  4UOU A;  5CGJ A;  1MS4 A;  1EUU A;  2YDT A;  3T1E A;  5HUK A;  3V65 B;  4FPC A;  1NNC A;  4GN8 A;  4K1K A;  3TIB A;  3UC1 A;  5FNQ A;  4D52 B;  5D9B A;  4QNP A;  1V3E A;  3I1C A;  3LI4 A;  4QN6 A;  2HTU A;  1N7D A;  3Q6T A;  2F10 A;  4FPK A;  1EUR A;  4CH9 A;  2FLU X;  4KS1 A;  4YW3 A;  4NN9 A;  4CPO A;  4YW1 A;  4YZ5 A;  4M3M A;  2F26 A;  2YA4 A;  4FP3 A;  4O5T A;  5GX3 A;  4MJU A;  1INV A;  5HUG A;  4Q1U A;  3D11 A;  4AGI A;  5HX0 A;  4D8S A;  4B7M A;  4HZZ A;  2VVZ A;  1N6E A;  4FOW A;  2HT5 A;  1NSC A;  3A71 A;  3ADE A;  4XYX A;  1MS0 A;  1X2J A;  2ZB6 A;  3A72 A;  1H6L A;  4K1I A;  3B7E A;  3TC9 A;  4XJA A;  1CQ1 A;  1Z4W A;  3NSS A;  4HHO A;  4PWZ A;  4FJ6 A;  4GDJ A;  1VCJ A;  4MWQ A;  2HT7 A;  4YW4 A;  1NN2 A;  3ALW A;  4XIK A;  1N1S A;  1E1A A;  2HTR A;  2VAQ A;  1PJX A;  1A14 N;  3DAS A;  1A4G A;  4GZX A;  3W09 A;  1OFZ A;  3D12 A;  5FNU A;  4GZP A;  2QWH A;  1EUT A;  5FWW A;  1S0I A;  4N1B A;  5B2D A;  4FPO B;  4MWJ A;  4YZ2 A;  1SLL A;  2XZI A;  1NMA N;  1Z4X A;  1USX A;  3FVZ A;  4CPZ A;  2X9M A;  4Q6K A;  3CYE A;  2DG1 A;  4MZA A;  2F0Z A;  4SLI A;  3JU4 A;  3IAX A;  4D52 A;  4YZ1 A;  5HUN A;  1DIL A;  1ING A;  2C4L A;  2XZK A;  4FPE A;  3SIL A;  4FPL A;  3TIA A;  4WEF A;  1W8N A;  3H6J A;  3SLI A;  3CL0 A;  4B7R A;  1SLI A;  2F24 A;  4GNA A;  4HW6 A;  1INY A;  4YZ4 A;  4D52 C;  5HUM A;  1E8U A;  1N6D A;  2QE8 A;  4FOV A;  2QWD A;  5F9T A;  3GVL A;  4KS5 A;  2IVZ A;  2VSK A;  2POO A;  2HQS A;  4FPG A;  4MWX A;  2RKC A;  1SO7 A;  4MZE A;  3DR2 A;  4MX0 A;  1V3D A;  1WP5 A;  3K36 A;  4L7B A;  4XMA A;  1U6D X;  1W21 A;  1MS8 A;  4QN7 A;  2QWG A;  3TI3 A;  4M4U A;  5JYY A;  3S2K A;  2FP9 A;  3BEQ A;  2HTQ A;  4X6K A;  3B69 A;  3O9J A;  4X47 A;  4AH4 A;  4WEG A;  1W20 A;  5B2C A;  1INX A;  3K3A A;  1EUS A;  4GZT A;  4O5S A;  4XMI A;  4CPY A;  3SRE A;  4B7N A;  1W0O A;  1QLG A;  1NNB A;  4XJW A;  1MS3 A;  4GNB A;  1B9T A;  1CRZ A;  4HHQ A;  1V0E A;  3AMR A;  3K37 A;  2HTV A;  2FPC A;  2VSM A;  3Q6P A;  1NCD N;  5H47 A;  3H71 A;  2VW0 A;  3P5B L;  5GX2 A;  2SLI A;  1WCS A;  2ZB5 A;  4CHB A;  4ZLR A;  1MS9 A;  3VNG A;  1IVF A;  4FPF A;  3E5Z A;  3L6V A;  3TI4 A;  1Q7F A;  4FZH A;  1RWL A;  1V2I A;  5GX4 A;  1INF A;  2QWF A;  2SIL A;  2BZD A;  2VWD A;  4GZS A;  2F27 A;  4L7D A;  3TI5 A;  4YY8 A;  4XJ9 A;  4HZV A;  4NC5 A;  2GVV A;  3FW0 A;  1IVB A;  1NMC A;  1S0J A;  2YA7 A;  3SOV A;  3O4P A;  1F8D A;  1S18 A;  2QWA A;  1S1D A;  1B9V A;  2IAQ A;  2W5O A;  4WA5 A;  2QWB A;  1N1Y A;  1NCB N;  1KIT A;  2IAU A;  2VK6 A;  3LI3 A;  4JF7 A;  4X49 A;  4XJU A;  3SOB B;  1MS5 A;  1V0F A;  1W8O A;  3AMS A;  1NNA A;  1MS1 A;  2YA6 A;  2OJH A;  4DGR A;  2GVW A;  4GNC A;  2IAV A;  5D9C A;  2FHR A;  4M4V A;  2F28 A;  4XMB A;  1V0Z A;  4QN4 A;  5D9D A;  3WW9 A;  2HU0 A;  4K1H A;  1IVE A;  4XJ8 A;  1Z4V A;  2VW2 A;  4FVK A;  2AEP A;  1XOG A;  2FPB A;  2VK7 A;  1XOE A;  1L7F A;  4WA3 A;  1E8T A;  2QWI A;  5GTQ A;  3INB A;  2BF6 A;  1F8C A;  3ZGD A;  3V1S A;  4B7Q A;  2ISM A;  2QWE A;  2YA8 A;  1SUU A;  4YW2 A;  4MWU A;  4DG6 A;  1ZI0 A;  4WA4 A;  5EO7 A;  3SRG A;  2CML A;  4ZGC A;  3KYA A;  4KS3 A;  1Z50 A;  4NCS A;  2G8S A;  2B8H A;  3BYC A;  2H2N A;  3HLI A;  1F8E A;  2QWC A;  2WOZ A;  1RWI A;  3S8V A;  4H53 A;  2DYH A;  3V64 C;  1CRU A;  1Z4Y A;  4XIL A;  4CPM A;  3CL2 A;  2HTW A;  4XIO A;  7NN9 A;  1WCQ A;  4YZ3 A;  4ASC A;  4I00 A;  2AEQ A;  2SIM A;  2F29 A;  2IAP A;  2HTY A;  2BAT A;  1C9U A;  2AGS A;  3HRP A;  4QN5 A;  4UF7 A;  3U0S A;  1DIM A;  4XOG A;  4G3N A;  2F13 A;  2F12 A;  3OPZ A;  2F25 A;  4QN3 A;  1N1T A;  2W5N A;  1NMB N;  2IAW A;  3WDZ A;  4FOQ A;  4YW5 A;  1F8B A;  4AGT A;  1W1X A;  5FZJ A;  3A9G A;  2IAX A;  3Q6K A;  2XZJ A;  4FQ4 A;  1NSB A;  3SAN A;  1POO A;  1CVM A;  5EO8 A;  4A0P A;  4C1Y B;  4GZW A;  4KS2 A;  3NN9 A;  4L7C A;  3TI8 A;  1NCA N;  3S94 A;  2W38 A;  4IN4 A;  5M1Z A;  4K3Y A;  1C5K A;  1X2R A;  1K32 A;  2IAT A;  4CSD A;  2AH2 A;  5GX5 A;  2JKB A;  2YDP A;  3SAL A;  2VK5 A;  2HT8 A;  2YA5 A;  3WWA A;  1NCC N;  1B9S A;  4IQK A;  5FNS A;  2V91 A;  5GX1 A;  4R40 A;  2FP8 A;  3SOQ A;  5F72 C;  2DG0 A;  2ZWA A;  2VPJ A;  4XJZ A;  4KS4 A;  1VCU A;  2QWJ A;  3H72 A;  1IUC A;  2W8B B;  2ZZK A;  6NN9 A;  2Z32 A;  4B7J A;  4HIZ A;  4IYG A;  2ZW9 A;  3II7 A;  2GHS A;  2GVX A;  2GVU A;  3PJQ A;  1MR5 A;  4MC7 A;  2F11 A;  4GJT A;  4BBW A;  1NSD A;  4XJQ A;  1Z4Z A;  5FZN A;  4HZW A;  3ALX A;  4GB1 A;  3HLH A;  2VW1 A;  2A75 A;  2IAO A;  4MWV A;  4FPJ A;  1IVD A;  4HZX A;  3NO0 A;  3K38 A;  3G4H A;  3H73 A;  4H52 A;  4MWY A;  2QWK A;  4CPL A; 
#chains in the Genus database with same CATH homology
 4AGI A;  1OFZ A;  4AH4 A;  4C1Y B;  4D52 A;  4D52 C;  5H47 A;  4C1Y A;  4UOU A;  1IUB A;  4CSD A;  4AHA A;  4AGT A;  4D4U A;  5EO8 A;  4D52 B;  5EO7 A;  1IUC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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