4D52B

Crystal structure of fucose binding lectin from aspergillus fumigatus (afl) in complex with l-galactopyranose.
Total Genus 77
5010015020025030001020304050607080
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
314
structure length
313
Chain Sequence
STPGAQQVLFRTGIAAVNSTNHLRVYFQDVYGSIRESLYEGSWANGTEKNVIGNAKLGSPVAATSKELKHIRVYTLTEGNTLQEFAYDSGTGWYNGGLGGAKFQVAPYSIAAVFLAGTDALQLRIYAQKPDNTIQEYMWNGDGWKEGTNLGGALPGTGIGATSFRYTDYNGPSIRIWFQTDDLKLVQRAYDPHKGWYPDLVTIFDRAPPRTAIAATSFGAGNSSIYMRIYFVNSDNTIWQVCWDHGKGYHDKGTITPVIQGSEVAIISWGSFANNGPDLRLYFQNGTYISAVSEWVWNRAHGSQLGRSALPPA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV1 (3-6)3H1 (6-8)TII9 (288-291)TI1 (30-33)S3 (34-40)TII1 (10-13)S2 (23-29)S1 (15-20)S22 (266-273)TIV2 (19-22)S6 (62-67)TII2 (57-60)S5 (52-55)TI2 (48-51)TVIII2 (309-312)TIV3 (40-43)S8 (83-89)S7 (71-77)S10 (113-116)TIV6 (66-69)TII'2 (67-70)TII3 (89-92)3H2 (99-102)TI4 (107-110)TI5 (131-134)S11 (125-130)S14 (161-166)TII4 (156-159)S12 (135-141)S13 (146-154)S16 (187-193)S15 (175-181)S18 (215-223)TI6 (168-171)TII7 (246-249)TIV10 (204-207)TII5 (210-213)TI7 (182-185)TI8 (193-196)S19 (226-235)TII6 (223-226)S20 (239-246)S21 (250-259)TII8 (261-264)S23 (276-286)TIV13 (273-276)S24 (294-300)TIV16 (290-293)TIV15 (289-292)S25 (304-308)TI3 (78-81)S17 (197-206)TIV17 (300-303)S4 (44-46)S9 (93-96)TI10 (235-238)Updating...
connected with : NaN
molecule tags Sugar binding protein
source organism Aspergillus fumigatus
publication title Structural Insights Into Aspergillus Fumigatus Lectin Specificity: Afl Binding Sites are Functionally Non-Equivalent.
pubmed doi rcsb
molecule keywords FUCOSE-SPECIFIC LECTIN FLEA
total genus 77
structure length 313
sequence length 314
chains with identical sequence D
ec nomenclature
pdb deposition date 2014-11-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF07938 Fungal_lectin Fungal fucose-specific lectin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.120.10.70 Mainly Beta 6 Propeller Neuraminidase Fucose-specific lectin 4d52B00
5EO7A 4D52B 4AGIA 1OFZA 4C1YA 5EO8A 1IUBA 4D4UA 5H47A 4C1YB 4D52A 4AH4A 4UOUA 4D52C 1IUCA 4AGTA 4CSDA 4AHAA
chains in the Genus database with same CATH superfamily
5CGJA 1DILA 1CRUA 2AGSA 2F24A 4XJ8A 4M4NA 2WOZA 3HLHA 1QLGA 2QWEA 2QWFA 2W5OA 4KS4A 3K38A 2AEQA 1W21A 2YA8A 1MR5A 3D12A 1V0ZA 3FVZA 5F72C 5EO7A 2HTVA 4KS3A 2YA5A 5EX7A 1MZ6A 1K32A 1MWEA 4MC7A 4R40A 1QBIA 2BZDA 4D8SA 4AH4A 4ZLRA 3CL2A 2W5NA 3TI6A 2H2UA 4MJUA 2VSMA 1SUUA 1INWA 1ZI0A 1RWIA 3PJQA 3SOVA 1U6DX 1B9VA 4N1BA 2XCYA 3K39A 1NPEA 2VW2A 1SLLA 2HTWA 1INFA 5NN9A 4UOUA 2YA6A 2IVZA 4NN9A 1Z4YA 3H73A 5GX4A 1IUCA 2Z32A 1ZGKA 4YZ1A 3U0SA 4O5SA 3SALA 3VNHA 1A4QA 4XJ9A 4MWRA 3KYAA 1Z4WA 5FZNA 4XJQA 2DYHA 3NN9A 3ZGDA 4XJRA 1W8NA 3IAXA 4MWYA 1CQ1A 2QWGA 2DSOA 2P4OA 1NCCN 3S8ZA 3H71A 4I00A 3ALXA 3TI4A 1Z4VA 4K1JA 2QWJA 4XILA 4CPMA 5B2CA 4WA4A 3FW0A 3WWAA 1S1DA 2GVXA 3LI4A 4WA3A 2IAPA 5GX1A 1XOEA 5D9CA 4GZPA 4GNAA 4X6KA 4CH9A 1IVGA 3NO0A 3JU4A 3W09A 4L7DA 2CMLA 2QWCA 2QWAA 5FNTA 1E8VA 3ADEA 4AHAA 4L7CA 2ZWAA 2YDTA 4GZOA 1PJXA 2IAOA 1N6DA 4FPHA 4KS1A 4YW4A 3K36A 2QWDA 2HTUA 3CL0A 4Q1UA 1IVDA 3WN7A 2HTRA 4IFNX 1POOA 3GVLA 2IAQA 1E1AA 3E5ZA 1INXA 1BJIA 4GN9A 1IUBA 3H6JA 4IMBA 4M4VA 4B7JA 4DG6A 4YW3A 2F29A 4FVKA 2IAWA 1Z4XA 4YZ4A 1NN2A 4XHXA 1NCAN 5FNSA 3ZGCA 1N1SA 4M4UA 4FOYA 4XJWA 4C1YA 5JYYA 2F11A 3S8VA 1SLIA 4XYXA 2QWHA 1EUUA 3SANA 2JKBA 3LI3A 4L7BA 1B9TA 4QNPA 5EO8A 1W1XA 4FQ4A 2X9MA 3LI5A 1MS5A 1SNTA 1NCDN 1A4GA 3B7EA 4IFLX 1IVBA 1V2IA 4XJUA 5HUKA 5HUGA 2VWDA 4XIOA 1F8BA 4HHOA 1IJQA 1A14N 4HZYA 1MS4A 5FWWA 4GZXA 4FPGA 1V3BA 1NCBN 1INYA 3SOQA 1USXA 4FP2A 4GN8A 4GZWA 3V64C 1RWLA 2VK7A 5B2DA 4WEFA 2B8HA 4YW1A 4MWQA 2H2NA 2AH2A 4IFJA 4B7QA 4XJAA 3A71A 1X2RA 1INVA 4D52A 1WP5A 3Q6KA 4CPLA 1W0PA 4O5TA 1MS3A 4G3NA 3UC1A 2GVUA 2IARA 5GX5A 2W8BB 4HW6A 3SILA 4XMBA 4K1KA 3DASA 4MWVA 4GZSA 3CYEA 2FP8A 1NNBA 2GHSA 7NN9A 1C9UA 1WCQA 1MZ5A 2W20A 5D9BA 2F28A 1NMBN 2VAQA 4KS5A 2IASA 2VW1A 3V65B 2POOA 5D9DA 4MWXA 3ALWA 4PWZA 3G4EA 4GZTA 4ZGCA 1EUTA 4Q6KA 1VCUA 2HTQA 4YY8A 3KGGA 3T1EA 1L7FA 3Q6PA 4FPEA 4QN7A 1L7HA 4XHBA 3SREA 5GTQA 2DG0A 3S94A 4XMAA 2QWIA 4K1IA 2IAXA 3L6VA 1W8OA 3VNGA 6NN9A 1CRZA 4SLIA 3INBA 1N1VA 5F9TA 4YW5A 2BERA 4X4AA 3II7A 4AGTA 1E8UA 1MS0A 4X47A 1NNAA 2FPBA 2BATA 3A9HA 1S18A 4QN6A 3O9JA 4DGRA 2ZZKA 3AMRA 1V0FA 4MZAA 5FNUA 4QN4A 1INHA 4GDIA 3GVJA 4FPLA 5FNRA 2YA4A 1NSCA 5GX2A 1L7GA 2VK5A 3HRPA 4GB1A 2HTYA 3SOBB 1NSBA 2F27A 4JF7A 4IN4A 4CPYA 4CPNA 1NNCA 5FZJA 3K37A 4HZXA 4FPOB 4IYGA 4CSDA 4WEGA 3AMSA 1V3DA 2F13A 1EUSA 4YZ2A 2A75A 2BF6A 3O4PA 4NC5A 1OFZA 4HZZA 1V3EA 3H72A 3K3AA 3BEQA 2RKCA 4D52C 4ZY3A 1Q7FA 1WCSA 3TC9A 4GDJA 4YZ3A 2IAUA 4HZVA 1Z50A 3OPZA 4FOWA 5HUMA 4XOGA 3TIAA 5M1ZA 4B7MA 2IATA 2HU0A 4WA5A 4FPKA 4KS2A 4QN3A 3WW9A 1MS1A 2QWKA 1N6FA 2XZIA 4GNCA 3TIBA 2SLIA 4JMLA 3BYCA 1INGA 4NCSA 3I1CA 4IQKA 5H47A 2W38A 5GX3A 1F8DA 2GVWA 2F12A 2F10A 2F25A 1W20A 2C4LA 4FJ6A 1IVCA 1KITA 4GNBA 3P5BL 4GN7A 4H52A 4UF7A 1V04A 2HT7A 2C4AA 4H53A 3TICA 4J9TA 5FNQA 3TI3A 1DIMA 4K1HA 1H6LA 1F8EA 2AEPA 2FHRA 4AGIA 1USRA 1S0JA 4XMIA 3V1SA 4X49A 3TI8A 1C5KA 2VSKA 2YA7A 2VW0A 1EURA 2F0ZA 4B7RA 2HT8A 4FOVA 2HQSA 1XOGA 2HU4A 1NMAN 3HLIA 3TI5A 2G8SA 2V91A 1V0EA 4MJVA 4XE9A 1IVEA 2IAVA 1SO7A 2QE8A 3G4HA 2FP9A 1IVFA 4CHBA 3DR2A 4D4UA 1X2JA 2QWBA 4FPFA 4B7NA 2ZB5A 2XZJA 4MWWA 3CKZA 5HUNA 2YDPA 2SILA 4A0PA 4MWLA 4ASCA 2FLUX 4FPYA 1N1YA 2W8BA 4C1YB 4CPZA 1NSDA 1F8CA 3SRGA 4XJZA 3GVKA 4HHQA 5HX0A 2VPJA 1N6EA 4XIKA 2OJHA 4GJTA 4GZQA 4FZHA 4FPCA 3B69A 2GVVA 2F26A 1S0IA 3WDZA 1N1TA 4YW2A 1CVMA 3A72A 3Q6TA 3D11A 2XN4A 2ZW9A 1MS8A 4HIZA 4MWJA 1NMCA 2ZB6A 4FOQA 4HZWA 2VVZA 4FP3A 4MX0A 1B9SA 3A9GA 3O9KA 4FPJA 4CPOA 1Z4ZA 1VCJA 4QN5A 2FPCA 4D52B 2VK6A 1W0OA 3NSSA 1E8TA 4MZEA 2HT5A 4BBWA 1N7DA 3SLIA 2SIMA 4GEZA 4YZ5A 2ISMA 4MWUA 2DG1A 3S2KA 4M3MA 2XZKA 4K3YA 1MS9A 1V3CA
chains in the Genus database with same CATH topology
5EO7A 4D52B 4AGIA 1OFZA 4C1YA 5EO8A 1IUBA 4D4UA 5H47A 4C1YB 4D52A 4AH4A 4UOUA 4D52C 1IUCA 4AGTA 4CSDA 4AHAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5EO7 A;  4D52 B;  4AGI A;  1OFZ A;  4C1Y A;  5EO8 A;  1IUB A;  4D4U A;  5H47 A;  4C1Y B;  4D52 A;  4AH4 A;  4UOU A;  4D52 C;  1IUC A;  4AGT A;  4CSD A;  4AHA A; 
#chains in the Genus database with same CATH topology
 5CGJ A;  1DIL A;  1CRU A;  2AGS A;  2F24 A;  4XJ8 A;  4M4N A;  2WOZ A;  3HLH A;  1QLG A;  2QWE A;  2QWF A;  2W5O A;  4KS4 A;  3K38 A;  2AEQ A;  1W21 A;  2YA8 A;  1MR5 A;  3D12 A;  1V0Z A;  3FVZ A;  5F72 C;  5EO7 A;  2HTV A;  4KS3 A;  2YA5 A;  5EX7 A;  1MZ6 A;  1K32 A;  1MWE A;  4MC7 A;  4R40 A;  1QBI A;  2BZD A;  4D8S A;  4AH4 A;  4ZLR A;  3CL2 A;  2W5N A;  3TI6 A;  2H2U A;  4MJU A;  2VSM A;  1SUU A;  1INW A;  1ZI0 A;  1RWI A;  3PJQ A;  3SOV A;  1U6D X;  1B9V A;  4N1B A;  2XCY A;  3K39 A;  1NPE A;  2VW2 A;  1SLL A;  2HTW A;  1INF A;  5NN9 A;  4UOU A;  2YA6 A;  2IVZ A;  4NN9 A;  1Z4Y A;  3H73 A;  5GX4 A;  1IUC A;  2Z32 A;  1ZGK A;  4YZ1 A;  3U0S A;  4O5S A;  3SAL A;  3VNH A;  1A4Q A;  4XJ9 A;  4MWR A;  3KYA A;  1Z4W A;  5FZN A;  4XJQ A;  2DYH A;  3NN9 A;  3ZGD A;  4XJR A;  1W8N A;  3IAX A;  4MWY A;  1CQ1 A;  2QWG A;  2DSO A;  2P4O A;  1NCC N;  3S8Z A;  3H71 A;  4I00 A;  3ALX A;  3TI4 A;  1Z4V A;  4K1J A;  2QWJ A;  4XIL A;  4CPM A;  5B2C A;  4WA4 A;  3FW0 A;  3WWA A;  1S1D A;  2GVX A;  3LI4 A;  4WA3 A;  2IAP A;  5GX1 A;  1XOE A;  5D9C A;  4GZP A;  4GNA A;  4X6K A;  4CH9 A;  1IVG A;  3NO0 A;  3JU4 A;  3W09 A;  4L7D A;  2CML A;  2QWC A;  2QWA A;  5FNT A;  1E8V A;  3ADE A;  4AHA A;  4L7C A;  2ZWA A;  2YDT A;  4GZO A;  1PJX A;  2IAO A;  1N6D A;  4FPH A;  4KS1 A;  4YW4 A;  3K36 A;  2QWD A;  2HTU A;  3CL0 A;  4Q1U A;  1IVD A;  3WN7 A;  2HTR A;  4IFN X;  1POO A;  3GVL A;  2IAQ A;  1E1A A;  3E5Z A;  1INX A;  1BJI A;  4GN9 A;  1IUB A;  3H6J A;  4IMB A;  4M4V A;  4B7J A;  4DG6 A;  4YW3 A;  2F29 A;  4FVK A;  2IAW A;  1Z4X A;  4YZ4 A;  1NN2 A;  4XHX A;  1NCA N;  5FNS A;  3ZGC A;  1N1S A;  4M4U A;  4FOY A;  4XJW A;  4C1Y A;  5JYY A;  2F11 A;  3S8V A;  1SLI A;  4XYX A;  2QWH A;  1EUU A;  3SAN A;  2JKB A;  3LI3 A;  4L7B A;  1B9T A;  4QNP A;  5EO8 A;  1W1X A;  4FQ4 A;  2X9M A;  3LI5 A;  1MS5 A;  1SNT A;  1NCD N;  1A4G A;  3B7E A;  4IFL X;  1IVB A;  1V2I A;  4XJU A;  5HUK A;  5HUG A;  2VWD A;  4XIO A;  1F8B A;  4HHO A;  1IJQ A;  1A14 N;  4HZY A;  1MS4 A;  5FWW A;  4GZX A;  4FPG A;  1V3B A;  1NCB N;  1INY A;  3SOQ A;  1USX A;  4FP2 A;  4GN8 A;  4GZW A;  3V64 C;  1RWL A;  2VK7 A;  5B2D A;  4WEF A;  2B8H A;  4YW1 A;  4MWQ A;  2H2N A;  2AH2 A;  4IFJ A;  4B7Q A;  4XJA A;  3A71 A;  1X2R A;  1INV A;  4D52 A;  1WP5 A;  3Q6K A;  4CPL A;  1W0P A;  4O5T A;  1MS3 A;  4G3N A;  3UC1 A;  2GVU A;  2IAR A;  5GX5 A;  2W8B B;  4HW6 A;  3SIL A;  4XMB A;  4K1K A;  3DAS A;  4MWV A;  4GZS A;  3CYE A;  2FP8 A;  1NNB A;  2GHS A;  7NN9 A;  1C9U A;  1WCQ A;  1MZ5 A;  2W20 A;  5D9B A;  2F28 A;  1NMB N;  2VAQ A;  4KS5 A;  2IAS A;  2VW1 A;  3V65 B;  2POO A;  5D9D A;  4MWX A;  3ALW A;  4PWZ A;  3G4E A;  4GZT A;  4ZGC A;  1EUT A;  4Q6K A;  1VCU A;  2HTQ A;  4YY8 A;  3KGG A;  3T1E A;  1L7F A;  3Q6P A;  4FPE A;  4QN7 A;  1L7H A;  4XHB A;  3SRE A;  5GTQ A;  2DG0 A;  3S94 A;  4XMA A;  2QWI A;  4K1I A;  2IAX A;  3L6V A;  1W8O A;  3VNG A;  6NN9 A;  1CRZ A;  4SLI A;  3INB A;  1N1V A;  5F9T A;  4YW5 A;  2BER A;  4X4A A;  3II7 A;  4AGT A;  1E8U A;  1MS0 A;  4X47 A;  1NNA A;  2FPB A;  2BAT A;  3A9H A;  1S18 A;  4QN6 A;  3O9J A;  4DGR A;  2ZZK A;  3AMR A;  1V0F A;  4MZA A;  5FNU A;  4QN4 A;  1INH A;  4GDI A;  3GVJ A;  4FPL A;  5FNR A;  2YA4 A;  1NSC A;  5GX2 A;  1L7G A;  2VK5 A;  3HRP A;  4GB1 A;  2HTY A;  3SOB B;  1NSB A;  2F27 A;  4JF7 A;  4IN4 A;  4CPY A;  4CPN A;  1NNC A;  5FZJ A;  3K37 A;  4HZX A;  4FPO B;  4IYG A;  4CSD A;  4WEG A;  3AMS A;  1V3D A;  2F13 A;  1EUS A;  4YZ2 A;  2A75 A;  2BF6 A;  3O4P A;  4NC5 A;  1OFZ A;  4HZZ A;  1V3E A;  3H72 A;  3K3A A;  3BEQ A;  2RKC A;  4D52 C;  4ZY3 A;  1Q7F A;  1WCS A;  3TC9 A;  4GDJ A;  4YZ3 A;  2IAU A;  4HZV A;  1Z50 A;  3OPZ A;  4FOW A;  5HUM A;  4XOG A;  3TIA A;  5M1Z A;  4B7M A;  2IAT A;  2HU0 A;  4WA5 A;  4FPK A;  4KS2 A;  4QN3 A;  3WW9 A;  1MS1 A;  2QWK A;  1N6F A;  2XZI A;  4GNC A;  3TIB A;  2SLI A;  4JML A;  3BYC A;  1ING A;  4NCS A;  3I1C A;  4IQK A;  5H47 A;  2W38 A;  5GX3 A;  1F8D A;  2GVW A;  2F12 A;  2F10 A;  2F25 A;  1W20 A;  2C4L A;  4FJ6 A;  1IVC A;  1KIT A;  4GNB A;  3P5B L;  4GN7 A;  4H52 A;  4UF7 A;  1V04 A;  2HT7 A;  2C4A A;  4H53 A;  3TIC A;  4J9T A;  5FNQ A;  3TI3 A;  1DIM A;  4K1H A;  1H6L A;  1F8E A;  2AEP A;  2FHR A;  4AGI A;  1USR A;  1S0J A;  4XMI A;  3V1S A;  4X49 A;  3TI8 A;  1C5K A;  2VSK A;  2YA7 A;  2VW0 A;  1EUR A;  2F0Z A;  4B7R A;  2HT8 A;  4FOV A;  2HQS A;  1XOG A;  2HU4 A;  1NMA N;  3HLI A;  3TI5 A;  2G8S A;  2V91 A;  1V0E A;  4MJV A;  4XE9 A;  1IVE A;  2IAV A;  1SO7 A;  2QE8 A;  3G4H A;  2FP9 A;  1IVF A;  4CHB A;  3DR2 A;  4D4U A;  1X2J A;  2QWB A;  4FPF A;  4B7N A;  2ZB5 A;  2XZJ A;  4MWW A;  3CKZ A;  5HUN A;  2YDP A;  2SIL A;  4A0P A;  4MWL A;  4ASC A;  2FLU X;  4FPY A;  1N1Y A;  2W8B A;  4C1Y B;  4CPZ A;  1NSD A;  1F8C A;  3SRG A;  4XJZ A;  3GVK A;  4HHQ A;  5HX0 A;  2VPJ A;  1N6E A;  4XIK A;  2OJH A;  4GJT A;  4GZQ A;  4FZH A;  4FPC A;  3B69 A;  2GVV A;  2F26 A;  1S0I A;  3WDZ A;  1N1T A;  4YW2 A;  1CVM A;  3A72 A;  3Q6T A;  3D11 A;  2XN4 A;  2ZW9 A;  1MS8 A;  4HIZ A;  4MWJ A;  1NMC A;  2ZB6 A;  4FOQ A;  4HZW A;  2VVZ A;  4FP3 A;  4MX0 A;  1B9S A;  3A9G A;  3O9K A;  4FPJ A;  4CPO A;  1Z4Z A;  1VCJ A;  4QN5 A;  2FPC A;  4D52 B;  2VK6 A;  1W0O A;  3NSS A;  1E8T A;  4MZE A;  2HT5 A;  4BBW A;  1N7D A;  3SLI A;  2SIM A;  4GEZ A;  4YZ5 A;  2ISM A;  4MWU A;  2DG1 A;  3S2K A;  4M3M A;  2XZK A;  4K3Y A;  1MS9 A;  1V3C A; 
#chains in the Genus database with same CATH homology
 5EO7 A;  4D52 B;  4AGI A;  1OFZ A;  4C1Y A;  5EO8 A;  1IUB A;  4D4U A;  5H47 A;  4C1Y B;  4D52 A;  4AH4 A;  4UOU A;  4D52 C;  1IUC A;  4AGT A;  4CSD A;  4AHA A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.