4D52C

Crystal structure of fucose binding lectin from aspergillus fumigatus (afl) in complex with l-galactopyranose.
Total Genus 79
5010015020025030001020304050607080
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
79
sequence length
314
structure length
310
Chain Sequence
STPGAQQVLFRTGIAAVNSTNHLRVYFQDVYGSIRESLYEGSWANGTEKNVIGNAKLGSPVAATSKELKHIRVYTLTEGNTLQEFAYDSGTGWYNGGLGGAKFQVAPYSIAAVFLAGTDALQLRIYAQKPDNTIQEYMWNGDGWKEGTNLGGALPGTGIGATSFRYTDYNGPSIRIWFQTDDLKLVQRAYDPHKGWYPDLVTIFDRAPPRTAIAATSFGAGNSSIYMRIYFVNSDNTIWQVWDHGKGYHDKGTITPVIQGSEVAIISWGSFNGPDLRLYFQNGTYISAVSEWVWNRAHGSQLGRSALPPA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
3H1 (6-8)EMPTYTIV20 (307-310)TI1 (30-33)S3 (34-40)TII1 (10-13)S21 (255-259)S23 (280-286)S2 (23-29)S1 (15-20)S22 (266-271)TIV2 (19-22)S6 (62-67)TII2 (57-60)S5 (52-55)TI2 (48-51)S25 (304-308)TIV3 (40-43)S8 (83-89)S7 (71-77)S10 (113-116)TIV5 (66-69)TII'2 (67-70)3H2 (99-102)TI5 (107-110)TI6 (131-134)S11 (125-130)S14 (161-166)TII4 (156-159)S12 (135-141)S13 (146-154)S16 (187-193)S15 (175-181)S18 (215-223)TI7 (168-171)TII6 (246-249)TIV10 (204-207)TII5 (210-213)TI8 (182-185)S19 (226-235)S20 (239-245)TIV13 (249-252)TII7 (261-264)TIV16 (274-279)TIV15 (273-278)TIV18 (289-292)TIV17 (288-291)TI12 (300-303)S24 (294-300)TIV19 (290-293)TIV1 (3-6)TI4 (78-81)TII3 (89-92)S17 (197-206)TI9 (193-196)TIV11 (223-226)TI11 (235-238)TIV14 (272-277)S4 (44-46)S9 (93-96)Updating...
connected with : NaN
molecule tags Sugar binding protein
source organism Aspergillus fumigatus
publication title Structural Insights Into Aspergillus Fumigatus Lectin Specificity: Afl Binding Sites are Functionally Non-Equivalent.
pubmed doi rcsb
molecule keywords FUCOSE-SPECIFIC LECTIN FLEA
total genus 79
structure length 310
sequence length 314
ec nomenclature
pdb deposition date 2014-11-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF07938 Fungal_lectin Fungal fucose-specific lectin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.120.10.70 Mainly Beta 6 Propeller Neuraminidase Fucose-specific lectin 4d52C00
1IUCA 4D4UA 4C1YA 1IUBA 5EO7A 4AGTA 4UOUA 4AHAA 4D52B 5EO8A 4D52C 5H47A 1OFZA 4AGIA 4AH4A 4D52A 4CSDA 4C1YB
chains in the Genus database with same CATH superfamily
3S2KA 2YA6A 4YY8A 3OPZA 4HZVA 2YDPA 2C4LA 2QWGA 1K32A 4MX0A 3A71A 4A0PA 4JF7A 1EUTA 1V2IA 2ZB6A 4MWQA 7NN9A 3VNGA 4K3YA 3CL0A 4D4UA 2QWDA 1V3DA 3A9GA 4YZ2A 3SOQA 4D52A 4XJQA 1SO7A 4IYGA 3WN7A 3Q6TA 3B69A 3PJQA 4MWRA 2V91A 3NO0A 3HLIA 1INYA 2HTRA 2YA7A 1S0JA 2QWHA 3AMSA 4DG6A 1W0PA 2DYHA 4MWYA 4AH4A 4X6KA 3V64C 4MZEA 1IJQA 2YA4A 2AEPA 1SUUA 1V3BA 3H72A 1IVGA 2BF6A 4GZSA 1MWEA 2B8HA 4GB1A 4XYXA 1V04A 2XN4A 1A14N 4M3MA 3ZGDA 1NNBA 2G8SA 3ZGCA 3S8ZA 4FOQA 4GN7A 4MWJA 3HRPA 4MJUA 4CSDA 4HZZA 3NSSA 4B7RA 1S1DA 4YZ4A 3II7A 5D9CA 5H47A 3K38A 5HUMA 1USXA 2GVWA 5HX0A 4NC5A 3S94A 2DSOA 1F8BA 1MZ6A 2VPJA 2HTQA 4HZWA 1SLLA 1PJXA 4XJZA 2F26A 1L7FA 3FW0A 4HW6A 3ALWA 2ZB5A 4ASCA 4O5TA 1INWA 1WCQA 5GX5A 4MWXA 3T1EA 1S18A 2IAQA 4XJUA 2XZJA 3TI8A 3DASA 1N6DA 5EO7A 3LI5A 1WCSA 1N6FA 1V0ZA 1WP5A 2QWBA 2VK5A 4IFJA 4XIOA 3O4PA 4GDJA 2W5OA 2A75A 3SRGA 2VVZA 3H71A 4B7MA 2HT5A 1NSBA 2Z32A 4YW3A 2GVUA 2HQSA 3INBA 4JMLA 4XJ8A 1INFA 4K1JA 4NCSA 4K1KA 4IQKA 3NN9A 3U0SA 4KS1A 3G4HA 1IVBA 4MWUA 4AGIA 3WWAA 4GN8A 2IATA 3K3AA 3SOBB 4L7BA 1N6EA 3TI6A 4YZ1A 4D52C 1S0IA 2QWEA 1F8CA 4KS5A 1MR5A 1INXA 1C5KA 1DILA 4FPKA 4FOVA 4QN3A 2IAOA 5NN9A 3KYAA 3D12A 2YA8A 1X2JA 1QLGA 5M1ZA 4FP3A 4FZHA 3W09A 5F72C 6NN9A 2HTYA 1EUSA 4XOGA 3BEQA 4NN9A 1NCAN 5FWWA 3CYEA 4WA3A 4X49A 3LI4A 4XJ9A 1V3EA 5EO8A 4ZGCA 4CPYA 1V0FA 1E8TA 5FNTA 4SLIA 3AMRA 1POOA 1IVDA 3SANA 4UOUA 5HUKA 2FPBA 4B7NA 4J9TA 1B9TA 4IFNX 1W8OA 1Z4YA 5GTQA 4G3NA 1NMAN 3TI3A 4B7JA 2F11A 5FNUA 1Z4XA 2VW2A 4MWVA 4D8SA 2F28A 3ALXA 2FP8A 3UC1A 4CPNA 4YW5A 4GDIA 1B9VA 1Z4VA 2YDTA 4IN4A 5GX1A 5GX2A 2DG1A 1X2RA 4WEGA 5B2CA 2GHSA 2IAVA 1MS3A 2ISMA 1ZGKA 4FJ6A 4FPHA 3L6VA 1SLIA 4WEFA 4XHBA 3GVJA 3KGGA 4L7CA 4CHBA 2F0ZA 3DR2A 1IUCA 1CRUA 1CVMA 1F8EA 3Q6PA 2CMLA 5D9DA 1W21A 2VSKA 2HTVA 1MS1A 3FVZA 4IMBA 4MZAA 4Q1UA 1VCUA 1NNAA 2F12A 3SALA 3K39A 1Z4ZA 3I1CA 2P4OA 2GVXA 4FPFA 4GZOA 1MS4A 5B2DA 1N1SA 2SLIA 4FVKA 1NMBN 4O5SA 5HUNA 1RWLA 4FPCA 1USRA 1E8VA 2OJHA 4K1HA 3JU4A 2QWJA 4GEZA 3LI3A 1IVCA 3E5ZA 3TC9A 3A72A 2F29A 4I00A 4QNPA 3O9KA 1MZ5A 2RKCA 4CPLA 4GJTA 4M4NA 2F13A 1NPEA 2W38A 1CQ1A 2VK7A 1E1AA 1N1YA 1W1XA 2FPCA 1RWIA 2VK6A 2QE8A 1W0OA 2VW0A 2IASA 2YA5A 4YW2A 4CPMA 2HTUA 4FP2A 1W20A 3D11A 4HZXA 4MJVA 4CPZA 1EUUA 2FHRA 1NSDA 4UF7A 4QN6A 2QWAA 4L7DA 4YZ3A 2HU0A 2HT7A 1F8DA 1A4GA 4YW1A 3TI5A 4IFLX 1NCDN 4X4AA 3TIBA 4ZLRA 2XZIA 1SNTA 2SILA 4M4VA 5D9BA 3V65B 2H2UA 2XCYA 1EURA 2AH2A 2XZKA 3ADEA 4M4UA 4X47A 2ZZKA 4HHOA 4HZYA 4FPGA 2BERA 2VAQA 4XILA 2DG0A 2W20A 2IAWA 3P5BL 1B9SA 4GZPA 4KS2A 4XJWA 1XOGA 3HLHA 2FLUX 4CPOA 2W8BB 2F27A 4B7QA 2JKBA 2F10A 3V1SA 3K36A 2C4AA 4GZWA 1Z4WA 4AHAA 4GZQA 5EX7A 1N7DA 2HT8A 2IAPA 3TIAA 4GNAA 3TICA 1V3CA 3G4EA 2AEQA 4XIKA 1MS0A 1NMCA 2HU4A 4K1IA 5FNRA 1L7GA 3IAXA 1NCCN 1E8UA 1MS8A 2BZDA 1H6LA 2QWIA 4FPLA 1A4QA 1Z50A 4MWWA 3WDZA 3TI4A 3Q6KA 1N1TA 2GVVA 2VWDA 4XJAA 2SIMA 3BYCA 3SLIA 4XE9A 1U6DX 2W8BA 4QN5A 2FP9A 3S8VA 3CKZA 2WOZA 5F9TA 4WA4A 4XMAA 1V0EA 2W5NA 1Q7FA 3SOVA 1IVEA 4XHXA 4XMIA 1ZI0A 4HHQA 4PWZA 4HIZA 4AGTA 5FZNA 1KITA 4QN7A 1MS5A 4YW4A 1QBIA 5HUGA 1MS9A 4FPEA 4QN4A 1C9UA 1OFZA 3WW9A 2ZW9A 4C1YB 1CRZA 2QWCA 2X9MA 4CH9A 1L7HA 2IVZA 4H52A 2QWFA 1NN2A 3H73A 2BATA 3B7EA 2HTWA 4FPYA 5GX4A 3O9JA 3SILA 5CGJA 5JYYA 5FNSA 2QWKA 4GNCA 1INVA 4GZTA 4MC7A 4MWLA 1N1VA 2H2NA 5FZJA 3VNHA 1INHA 4FOWA 4WA5A 4FPJA 1BJIA 1IUBA 3A9HA 2IAXA 1W8NA 4H53A 2IAUA 4KS4A 1NSCA 4YZ5A 1INGA 4FPOB 4XMBA 4GN9A 1DIMA 2F24A 2VW1A 4N1BA 2AGSA 1IVFA 4C1YA 4FOYA 4KS3A 3GVKA 4D52B 3SREA 4XJRA 3GVLA 4GZXA 3H6JA 4FQ4A 1NCBN 3CL2A 5GX3A 4R40A 5FNQA 2F25A 2POOA 4ZY3A 3K37A 2ZWAA 4DGRA 1XOEA 1VCJA 1NNCA 4Q6KA 4GNBA 2IARA 2VSMA 4BBWA
chains in the Genus database with same CATH topology
1IUCA 4D4UA 4C1YA 1IUBA 5EO7A 4AGTA 4UOUA 4AHAA 4D52B 5EO8A 4D52C 5H47A 1OFZA 4AGIA 4AH4A 4D52A 4CSDA 4C1YB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1IUC A;  4D4U A;  4C1Y A;  1IUB A;  5EO7 A;  4AGT A;  4UOU A;  4AHA A;  4D52 B;  5EO8 A;  4D52 C;  5H47 A;  1OFZ A;  4AGI A;  4AH4 A;  4D52 A;  4CSD A;  4C1Y B; 
#chains in the Genus database with same CATH topology
 3S2K A;  2YA6 A;  4YY8 A;  3OPZ A;  4HZV A;  2YDP A;  2C4L A;  2QWG A;  1K32 A;  4MX0 A;  3A71 A;  4A0P A;  4JF7 A;  1EUT A;  1V2I A;  2ZB6 A;  4MWQ A;  7NN9 A;  3VNG A;  4K3Y A;  3CL0 A;  4D4U A;  2QWD A;  1V3D A;  3A9G A;  4YZ2 A;  3SOQ A;  4D52 A;  4XJQ A;  1SO7 A;  4IYG A;  3WN7 A;  3Q6T A;  3B69 A;  3PJQ A;  4MWR A;  2V91 A;  3NO0 A;  3HLI A;  1INY A;  2HTR A;  2YA7 A;  1S0J A;  2QWH A;  3AMS A;  4DG6 A;  1W0P A;  2DYH A;  4MWY A;  4AH4 A;  4X6K A;  3V64 C;  4MZE A;  1IJQ A;  2YA4 A;  2AEP A;  1SUU A;  1V3B A;  3H72 A;  1IVG A;  2BF6 A;  4GZS A;  1MWE A;  2B8H A;  4GB1 A;  4XYX A;  1V04 A;  2XN4 A;  1A14 N;  4M3M A;  3ZGD A;  1NNB A;  2G8S A;  3ZGC A;  3S8Z A;  4FOQ A;  4GN7 A;  4MWJ A;  3HRP A;  4MJU A;  4CSD A;  4HZZ A;  3NSS A;  4B7R A;  1S1D A;  4YZ4 A;  3II7 A;  5D9C A;  5H47 A;  3K38 A;  5HUM A;  1USX A;  2GVW A;  5HX0 A;  4NC5 A;  3S94 A;  2DSO A;  1F8B A;  1MZ6 A;  2VPJ A;  2HTQ A;  4HZW A;  1SLL A;  1PJX A;  4XJZ A;  2F26 A;  1L7F A;  3FW0 A;  4HW6 A;  3ALW A;  2ZB5 A;  4ASC A;  4O5T A;  1INW A;  1WCQ A;  5GX5 A;  4MWX A;  3T1E A;  1S18 A;  2IAQ A;  4XJU A;  2XZJ A;  3TI8 A;  3DAS A;  1N6D A;  5EO7 A;  3LI5 A;  1WCS A;  1N6F A;  1V0Z A;  1WP5 A;  2QWB A;  2VK5 A;  4IFJ A;  4XIO A;  3O4P A;  4GDJ A;  2W5O A;  2A75 A;  3SRG A;  2VVZ A;  3H71 A;  4B7M A;  2HT5 A;  1NSB A;  2Z32 A;  4YW3 A;  2GVU A;  2HQS A;  3INB A;  4JML A;  4XJ8 A;  1INF A;  4K1J A;  4NCS A;  4K1K A;  4IQK A;  3NN9 A;  3U0S A;  4KS1 A;  3G4H A;  1IVB A;  4MWU A;  4AGI A;  3WWA A;  4GN8 A;  2IAT A;  3K3A A;  3SOB B;  4L7B A;  1N6E A;  3TI6 A;  4YZ1 A;  4D52 C;  1S0I A;  2QWE A;  1F8C A;  4KS5 A;  1MR5 A;  1INX A;  1C5K A;  1DIL A;  4FPK A;  4FOV A;  4QN3 A;  2IAO A;  5NN9 A;  3KYA A;  3D12 A;  2YA8 A;  1X2J A;  1QLG A;  5M1Z A;  4FP3 A;  4FZH A;  3W09 A;  5F72 C;  6NN9 A;  2HTY A;  1EUS A;  4XOG A;  3BEQ A;  4NN9 A;  1NCA N;  5FWW A;  3CYE A;  4WA3 A;  4X49 A;  3LI4 A;  4XJ9 A;  1V3E A;  5EO8 A;  4ZGC A;  4CPY A;  1V0F A;  1E8T A;  5FNT A;  4SLI A;  3AMR A;  1POO A;  1IVD A;  3SAN A;  4UOU A;  5HUK A;  2FPB A;  4B7N A;  4J9T A;  1B9T A;  4IFN X;  1W8O A;  1Z4Y A;  5GTQ A;  4G3N A;  1NMA N;  3TI3 A;  4B7J A;  2F11 A;  5FNU A;  1Z4X A;  2VW2 A;  4MWV A;  4D8S A;  2F28 A;  3ALX A;  2FP8 A;  3UC1 A;  4CPN A;  4YW5 A;  4GDI A;  1B9V A;  1Z4V A;  2YDT A;  4IN4 A;  5GX1 A;  5GX2 A;  2DG1 A;  1X2R A;  4WEG A;  5B2C A;  2GHS A;  2IAV A;  1MS3 A;  2ISM A;  1ZGK A;  4FJ6 A;  4FPH A;  3L6V A;  1SLI A;  4WEF A;  4XHB A;  3GVJ A;  3KGG A;  4L7C A;  4CHB A;  2F0Z A;  3DR2 A;  1IUC A;  1CRU A;  1CVM A;  1F8E A;  3Q6P A;  2CML A;  5D9D A;  1W21 A;  2VSK A;  2HTV A;  1MS1 A;  3FVZ A;  4IMB A;  4MZA A;  4Q1U A;  1VCU A;  1NNA A;  2F12 A;  3SAL A;  3K39 A;  1Z4Z A;  3I1C A;  2P4O A;  2GVX A;  4FPF A;  4GZO A;  1MS4 A;  5B2D A;  1N1S A;  2SLI A;  4FVK A;  1NMB N;  4O5S A;  5HUN A;  1RWL A;  4FPC A;  1USR A;  1E8V A;  2OJH A;  4K1H A;  3JU4 A;  2QWJ A;  4GEZ A;  3LI3 A;  1IVC A;  3E5Z A;  3TC9 A;  3A72 A;  2F29 A;  4I00 A;  4QNP A;  3O9K A;  1MZ5 A;  2RKC A;  4CPL A;  4GJT A;  4M4N A;  2F13 A;  1NPE A;  2W38 A;  1CQ1 A;  2VK7 A;  1E1A A;  1N1Y A;  1W1X A;  2FPC A;  1RWI A;  2VK6 A;  2QE8 A;  1W0O A;  2VW0 A;  2IAS A;  2YA5 A;  4YW2 A;  4CPM A;  2HTU A;  4FP2 A;  1W20 A;  3D11 A;  4HZX A;  4MJV A;  4CPZ A;  1EUU A;  2FHR A;  1NSD A;  4UF7 A;  4QN6 A;  2QWA A;  4L7D A;  4YZ3 A;  2HU0 A;  2HT7 A;  1F8D A;  1A4G A;  4YW1 A;  3TI5 A;  4IFL X;  1NCD N;  4X4A A;  3TIB A;  4ZLR A;  2XZI A;  1SNT A;  2SIL A;  4M4V A;  5D9B A;  3V65 B;  2H2U A;  2XCY A;  1EUR A;  2AH2 A;  2XZK A;  3ADE A;  4M4U A;  4X47 A;  2ZZK A;  4HHO A;  4HZY A;  4FPG A;  2BER A;  2VAQ A;  4XIL A;  2DG0 A;  2W20 A;  2IAW A;  3P5B L;  1B9S A;  4GZP A;  4KS2 A;  4XJW A;  1XOG A;  3HLH A;  2FLU X;  4CPO A;  2W8B B;  2F27 A;  4B7Q A;  2JKB A;  2F10 A;  3V1S A;  3K36 A;  2C4A A;  4GZW A;  1Z4W A;  4AHA A;  4GZQ A;  5EX7 A;  1N7D A;  2HT8 A;  2IAP A;  3TIA A;  4GNA A;  3TIC A;  1V3C A;  3G4E A;  2AEQ A;  4XIK A;  1MS0 A;  1NMC A;  2HU4 A;  4K1I A;  5FNR A;  1L7G A;  3IAX A;  1NCC N;  1E8U A;  1MS8 A;  2BZD A;  1H6L A;  2QWI A;  4FPL A;  1A4Q A;  1Z50 A;  4MWW A;  3WDZ A;  3TI4 A;  3Q6K A;  1N1T A;  2GVV A;  2VWD A;  4XJA A;  2SIM A;  3BYC A;  3SLI A;  4XE9 A;  1U6D X;  2W8B A;  4QN5 A;  2FP9 A;  3S8V A;  3CKZ A;  2WOZ A;  5F9T A;  4WA4 A;  4XMA A;  1V0E A;  2W5N A;  1Q7F A;  3SOV A;  1IVE A;  4XHX A;  4XMI A;  1ZI0 A;  4HHQ A;  4PWZ A;  4HIZ A;  4AGT A;  5FZN A;  1KIT A;  4QN7 A;  1MS5 A;  4YW4 A;  1QBI A;  5HUG A;  1MS9 A;  4FPE A;  4QN4 A;  1C9U A;  1OFZ A;  3WW9 A;  2ZW9 A;  4C1Y B;  1CRZ A;  2QWC A;  2X9M A;  4CH9 A;  1L7H A;  2IVZ A;  4H52 A;  2QWF A;  1NN2 A;  3H73 A;  2BAT A;  3B7E A;  2HTW A;  4FPY A;  5GX4 A;  3O9J A;  3SIL A;  5CGJ A;  5JYY A;  5FNS A;  2QWK A;  4GNC A;  1INV A;  4GZT A;  4MC7 A;  4MWL A;  1N1V A;  2H2N A;  5FZJ A;  3VNH A;  1INH A;  4FOW A;  4WA5 A;  4FPJ A;  1BJI A;  1IUB A;  3A9H A;  2IAX A;  1W8N A;  4H53 A;  2IAU A;  4KS4 A;  1NSC A;  4YZ5 A;  1ING A;  4FPO B;  4XMB A;  4GN9 A;  1DIM A;  2F24 A;  2VW1 A;  4N1B A;  2AGS A;  1IVF A;  4C1Y A;  4FOY A;  4KS3 A;  3GVK A;  4D52 B;  3SRE A;  4XJR A;  3GVL A;  4GZX A;  3H6J A;  4FQ4 A;  1NCB N;  3CL2 A;  5GX3 A;  4R40 A;  5FNQ A;  2F25 A;  2POO A;  4ZY3 A;  3K37 A;  2ZWA A;  4DGR A;  1XOE A;  1VCJ A;  1NNC A;  4Q6K A;  4GNB A;  2IAR A;  2VSM A;  4BBW A; 
#chains in the Genus database with same CATH homology
 1IUC A;  4D4U A;  4C1Y A;  1IUB A;  5EO7 A;  4AGT A;  4UOU A;  4AHA A;  4D52 B;  5EO8 A;  4D52 C;  5H47 A;  1OFZ A;  4AGI A;  4AH4 A;  4D52 A;  4CSD A;  4C1Y B; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.