5EO7A

Crystal structure of aol
Total Genus 68

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
68
sequence length
310
structure length
310
Chain Sequence
STPGAQEVLFRTGIAAVNSTNHLRVYFQDSHGSIRESLYESGWANGTAKNVIAKAKLGTPLAATSKELKNIRVYSLTEDNVLQEAAYDSGSGWYNGALAGAKFTVAPYSRIGSVFLAGTNALQLRIYAQKTDNTIQEYMWNGDGWKEGTNLGVALPGTGIGVTCWRYTDYDGPSIRVWFQTDNLKLVQRAYDPHTGWYKELTTIFDKAPPRCAIAATNFNPGKSSIYMRIYFVNSDNTIWQVCWDHGQGYHDKRTITPVIQGSEIAIISWEGPELRLYFQNGTYVSAISEWTWGKAHGSQLGRRALPPAE
5010015020025030030025020015010050
0102030405060Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTVIa1 (307-310)AH1 (4-8)TII8 (283-286)TI1 (30-33)S3 (34-40)TII1 (10-13)TII7 (261-264)S23 (275-280)S2 (23-29)S1 (15-20)S22 (266-271)TIV1 (19-22)S6 (63-67)TII2 (57-60)S5 (52-55)TI2 (48-51)TVIII2 (304-307)TIV2 (40-43)S8 (83-89)S7 (71-77)S10 (112-116)TIV5 (66-69)TII'2 (67-70)3H1 (99-102)TI4 (107-110)TI5 (131-134)S11 (125-130)TII4 (156-159)S12 (135-141)S13 (146-154)TII5 (210-213)S15 (175-181)TI6 (168-171)TIV9 (223-226)TI7 (182-185)S16 (187-193)S21 (250-259)TI8 (193-196)S18 (215-220)S20 (239-246)TI10 (235-238)TIV12 (271-274)TIV14 (284-287)TIV15 (285-288)S24 (290-295)TIV16 (295-298)S25 (299-303)TI3 (78-81)TII3 (89-92)S14 (161-166)S17 (197-206)S19 (228-235)TII6 (246-249)S4 (44-46)S9 (93-96)Updating...
connected with : NaN
molecule tags Sugar binding protein
source organism Aspergillus oryzae rib40
publication title Six independent fucose-binding sites in the crystal structure of Aspergillus oryzae lectin
pubmed doi rcsb
molecule keywords Predicted protein
total genus 68
structure length 310
sequence length 310
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2015-11-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07938 Fungal_lectin Fungal fucose-specific lectin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.120.10.70 Mainly Beta 6 Propeller Neuraminidase Fucose-specific lectin 5eo7A00
4C1YA 1IUBA 5H47A 1OFZA 4AHAA 5EO8A 4D4UA 5EO7A 4C1YB 4AH4A 4D52A 4UOUA 4AGIA 4D52C 4CSDA 4D52B 4AGTA 1IUCA
chains in the Genus database with same CATH superfamily
2YDTA 2VW1A 3ZGCA 4MX0A 5HUGA 4MC7A 4FPLA 4GZQA 2FLUX 4CSDA 3OPZA 2V91A 5H47A 1H6LA 4MWQA 2SIMA 1INXA 4AGIA 2A75A 2H2NA 4MJVA 1C9UA 4I00A 4C1YB 5FNRA 4FPFA 2IATA 1MR5A 1W0OA 2W20A 4M4NA 1EUSA 3K3AA 1E8VA 1A14N 3G4EA 2QWGA 4CHBA 2VK7A 4IFNX 1NCDN 1N6FA 4GZXA 1MS8A 2YA6A 4ASCA 4FZHA 1E8TA 4L7DA 2FPBA 5HX0A 1KITA 2F27A 3INBA 1Z4VA 5NN9A 4K1HA 4HHOA 3SOQA 4MWRA 2DG0A 4C1YA 2W5NA 2SILA 1CQ1A 1INWA 1N1VA 4XIOA 1W21A 4GNBA 4JMLA 3L6VA 4HZVA 3K36A 3HRPA 1NMAN 2XZJA 4XMIA 1NSBA 1W0PA 4D52B 1NSCA 4YZ5A 1IUBA 2AH2A 1CVMA 4FPEA 2HU4A 1XOEA 1NSDA 1INGA 2QWEA 4GN8A 4HZXA 4YW3A 2VWDA 1RWIA 4GZWA 4SLIA 2IVZA 5FWWA 2HTUA 1F8DA 1F8BA 4KS2A 3TICA 4M4UA 3V1SA 2P4OA 1IVDA 3WN7A 1S0IA 1SO7A 1S1DA 3NN9A 2IAQA 2YDPA 4H52A 1MS5A 2YA8A 4GJTA 3K38A 2VW0A 3LI3A 4FPCA 4XJ9A 3TC9A 5CGJA 1Z4XA 4D52A 2IAUA 1INHA 2GVUA 4XJWA 2F25A 3B7EA 2IAWA 4IFJA 4IN4A 2BF6A 1MZ5A 1Z4ZA 4K1KA 4L7BA 4FP3A 2QWBA 4XHBA 4B7JA 4HHQA 1IVEA 1L7GA 2G8SA 3CKZA 1WCQA 4HZWA 4MWYA 2W5OA 2QWCA 3CL0A 4YZ4A 2FP9A 4XJ8A 4FPHA 2F28A 3O4PA 2C4AA 3IAXA 4XJZA 4IYGA 4FQ4A 1EURA 2ZB5A 2FP8A 2QWIA 2GVWA 2DSOA 3B69A 1ZI0A 4FVKA 4WA4A 1PJXA 4K1JA 1Z50A 3I1CA 3TI3A 4D52C 2FPCA 1B9VA 1B9SA 3Q6TA 4XE9A 3II7A 4YZ3A 4CPYA 4MWWA 4KS3A 1NPEA 1SNTA 2ISMA 1QBIA 1DIMA 3AMRA 5FNQA 4DGRA 4XMBA 4M4VA 3NO0A 4QN7A 2IARA 2ZB6A 2VSMA 4DG6A 1F8EA 1IVGA 3GVLA 3SALA 2HTRA 3HLIA 1EUUA 1MZ6A 2W8BB 1OFZA 3CL2A 5FNSA 1IUCA 1VCUA 3V64C 4QNPA 1N6EA 3SANA 1NCCN 1N1SA 1NMBN 2HTYA 4GZOA 4HW6A 3WDZA 2VW2A 2B8HA 2IAXA 4YW5A 2GHSA 5D9DA 4KS5A 4MWJA 2VAQA 1VCJA 5HUKA 1IVFA 1F8CA 3P5BL 2VSKA 3A9HA 1U6DX 3Q6PA 4YZ1A 1SUUA 4WEFA 4J9TA 4FPJA 5F72C 4B7RA 1INVA 4CPLA 4B7MA 2F11A 2RKCA 4FPGA 1NN2A 1NMCA 3AMSA 5GTQA 4GN9A 2QWHA 3WWAA 2QWKA 1NNCA 4FOQA 4UF7A 4MZEA 4FP2A 3S94A 4O5TA 4AGTA 3CYEA 1CRUA 2AEQA 3VNGA 5D9BA 7NN9A 4QN3A 5FZNA 2ZW9A 2YA4A 1N6DA 2WOZA 3Q6KA 2F13A 5F9TA 4K1IA 4KS1A 1W20A 1WP5A 4GNAA 3SILA 1USRA 3O9JA 3V65B 1MS1A 2QWFA 3TI8A 2HTVA 2XN4A 4AHAA 1V2IA 5EO7A 4O5SA 3PJQA 4FPYA 2W38A 1W1XA 4XOGA 3TI5A 3H6JA 4CPOA 1Z4YA 1C5KA 3VNHA 4KS4A 2FHRA 4H53A 1IVCA 3S8ZA 1POOA 2QWAA 4R40A 4XHXA 4XJAA 1N7DA 1BJIA 2HU0A 3FVZA 4YW4A 2VK5A 4NN9A 1N1TA 4Q1UA 3ALWA 3K39A 2IAOA 1IVBA 3SOBB 4X6KA 5EX7A 1S0JA 4MZAA 4YW2A 1INFA 4XILA 4NCSA 2F24A 5HUMA 2QE8A 2POOA 2C4LA 2Z32A 4QN5A 3D12A 4ZGCA 4WEGA 5JYYA 1X2RA 4BBWA 4MJUA 4QN6A 1V0FA 4L7CA 1S18A 4ZLRA 1E8UA 3SRGA 5B2DA 5FZJA 4XJUA 4GZTA 3T1EA 2YA7A 5B2CA 1ZGKA 2BATA 3A71A 3E5ZA 1X2JA 4WA5A 3NSSA 2DG1A 2VVZA 2AGSA 4ZY3A 4GN7A 4IQKA 3TIAA 4MWXA 2F10A 2HQSA 2H2UA 2XCYA 2IAPA 3DR2A 4FPOB 2F26A 4XIKA 4Q6KA 5GX5A 3SOVA 1A4QA 2IAVA 2XZIA 5FNUA 3G4HA 5GX3A 4PWZA 4MWUA 3K37A 2HTQA 1V0ZA 2QWJA 1B9TA 4A0PA 4HZZA 1Z4WA 4AH4A 4MWVA 2XZKA 2QWDA 4M3MA 1L7HA 3GVJA 2ZZKA 1V3DA 2HTWA 3S2KA 4GEZA 2AEPA 3A9GA 2F29A 3HLHA 2CMLA 3ZGDA 3LI4A 4CH9A 2F0ZA 3SLIA 2GVXA 5M1ZA 1RWLA 3W09A 3ALXA 1EUTA 2W8BA 4GDIA 3SREA 5GX4A 1IJQA 4X49A 4CPZA 3WW9A 3DASA 2YA5A 2DYHA 3JU4A 2IASA 4CPNA 3KYAA 3H73A 4HIZA 2JKBA 3O9KA 4D4UA 3LI5A 4GZSA 2BZDA 1V0EA 4FOVA 4B7NA 5D9CA 1MS4A 3UC1A 1V3CA 1DILA 1A4GA 2F12A 3TIBA 4HZYA 4XJQA 1W8OA 4NC5A 5FNTA 1SLIA 4FJ6A 5GX2A 1V3EA 1WCSA 4X4AA 4WA3A 2HT8A 1NNBA 4N1BA 4YW1A 1N1YA 6NN9A 4GB1A 2X9MA 1MS0A 3D11A 1USXA 4XMAA 4GDJA 2HT5A 4MWLA 3H71A 2VK6A 4YY8A 3KGGA 1MS9A 4YZ2A 4GNCA 1SLLA 2ZWAA 2SLIA 3BEQA 1V04A 5EO8A 1NCBN 1W8NA 1V3BA 3A72A 2HT7A 4CPMA 1L7FA 1CRZA 1Q7FA 1MWEA 3ADEA 5HUNA 4QN4A 4XYXA 1XOGA 1NCAN 3TI6A 4JF7A 3S8VA 4X47A 2VPJA 4FOWA 1MS3A 4IFLX 3FW0A 2GVVA 3BYCA 1INYA 4G3NA 3U0SA 1NNAA 3GVKA 4FOYA 1K32A 2OJHA 4K3YA 4FPKA 1QLGA 3TI4A 4GZPA 4D8SA 4IMBA 2BERA 4UOUA 5GX1A 3H72A 4XJRA 1E1AA 4B7QA
chains in the Genus database with same CATH topology
4C1YA 1IUBA 5H47A 1OFZA 4AHAA 5EO8A 4D4UA 5EO7A 4C1YB 4AH4A 4D52A 4UOUA 4AGIA 4D52C 4CSDA 4D52B 4AGTA 1IUCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4C1Y A;  1IUB A;  5H47 A;  1OFZ A;  4AHA A;  5EO8 A;  4D4U A;  5EO7 A;  4C1Y B;  4AH4 A;  4D52 A;  4UOU A;  4AGI A;  4D52 C;  4CSD A;  4D52 B;  4AGT A;  1IUC A; 
#chains in the Genus database with same CATH topology
 2YDT A;  2VW1 A;  3ZGC A;  4MX0 A;  5HUG A;  4MC7 A;  4FPL A;  4GZQ A;  2FLU X;  4CSD A;  3OPZ A;  2V91 A;  5H47 A;  1H6L A;  4MWQ A;  2SIM A;  1INX A;  4AGI A;  2A75 A;  2H2N A;  4MJV A;  1C9U A;  4I00 A;  4C1Y B;  5FNR A;  4FPF A;  2IAT A;  1MR5 A;  1W0O A;  2W20 A;  4M4N A;  1EUS A;  3K3A A;  1E8V A;  1A14 N;  3G4E A;  2QWG A;  4CHB A;  2VK7 A;  4IFN X;  1NCD N;  1N6F A;  4GZX A;  1MS8 A;  2YA6 A;  4ASC A;  4FZH A;  1E8T A;  4L7D A;  2FPB A;  5HX0 A;  1KIT A;  2F27 A;  3INB A;  1Z4V A;  5NN9 A;  4K1H A;  4HHO A;  3SOQ A;  4MWR A;  2DG0 A;  4C1Y A;  2W5N A;  2SIL A;  1CQ1 A;  1INW A;  1N1V A;  4XIO A;  1W21 A;  4GNB A;  4JML A;  3L6V A;  4HZV A;  3K36 A;  3HRP A;  1NMA N;  2XZJ A;  4XMI A;  1NSB A;  1W0P A;  4D52 B;  1NSC A;  4YZ5 A;  1IUB A;  2AH2 A;  1CVM A;  4FPE A;  2HU4 A;  1XOE A;  1NSD A;  1ING A;  2QWE A;  4GN8 A;  4HZX A;  4YW3 A;  2VWD A;  1RWI A;  4GZW A;  4SLI A;  2IVZ A;  5FWW A;  2HTU A;  1F8D A;  1F8B A;  4KS2 A;  3TIC A;  4M4U A;  3V1S A;  2P4O A;  1IVD A;  3WN7 A;  1S0I A;  1SO7 A;  1S1D A;  3NN9 A;  2IAQ A;  2YDP A;  4H52 A;  1MS5 A;  2YA8 A;  4GJT A;  3K38 A;  2VW0 A;  3LI3 A;  4FPC A;  4XJ9 A;  3TC9 A;  5CGJ A;  1Z4X A;  4D52 A;  2IAU A;  1INH A;  2GVU A;  4XJW A;  2F25 A;  3B7E A;  2IAW A;  4IFJ A;  4IN4 A;  2BF6 A;  1MZ5 A;  1Z4Z A;  4K1K A;  4L7B A;  4FP3 A;  2QWB A;  4XHB A;  4B7J A;  4HHQ A;  1IVE A;  1L7G A;  2G8S A;  3CKZ A;  1WCQ A;  4HZW A;  4MWY A;  2W5O A;  2QWC A;  3CL0 A;  4YZ4 A;  2FP9 A;  4XJ8 A;  4FPH A;  2F28 A;  3O4P A;  2C4A A;  3IAX A;  4XJZ A;  4IYG A;  4FQ4 A;  1EUR A;  2ZB5 A;  2FP8 A;  2QWI A;  2GVW A;  2DSO A;  3B69 A;  1ZI0 A;  4FVK A;  4WA4 A;  1PJX A;  4K1J A;  1Z50 A;  3I1C A;  3TI3 A;  4D52 C;  2FPC A;  1B9V A;  1B9S A;  3Q6T A;  4XE9 A;  3II7 A;  4YZ3 A;  4CPY A;  4MWW A;  4KS3 A;  1NPE A;  1SNT A;  2ISM A;  1QBI A;  1DIM A;  3AMR A;  5FNQ A;  4DGR A;  4XMB A;  4M4V A;  3NO0 A;  4QN7 A;  2IAR A;  2ZB6 A;  2VSM A;  4DG6 A;  1F8E A;  1IVG A;  3GVL A;  3SAL A;  2HTR A;  3HLI A;  1EUU A;  1MZ6 A;  2W8B B;  1OFZ A;  3CL2 A;  5FNS A;  1IUC A;  1VCU A;  3V64 C;  4QNP A;  1N6E A;  3SAN A;  1NCC N;  1N1S A;  1NMB N;  2HTY A;  4GZO A;  4HW6 A;  3WDZ A;  2VW2 A;  2B8H A;  2IAX A;  4YW5 A;  2GHS A;  5D9D A;  4KS5 A;  4MWJ A;  2VAQ A;  1VCJ A;  5HUK A;  1IVF A;  1F8C A;  3P5B L;  2VSK A;  3A9H A;  1U6D X;  3Q6P A;  4YZ1 A;  1SUU A;  4WEF A;  4J9T A;  4FPJ A;  5F72 C;  4B7R A;  1INV A;  4CPL A;  4B7M A;  2F11 A;  2RKC A;  4FPG A;  1NN2 A;  1NMC A;  3AMS A;  5GTQ A;  4GN9 A;  2QWH A;  3WWA A;  2QWK A;  1NNC A;  4FOQ A;  4UF7 A;  4MZE A;  4FP2 A;  3S94 A;  4O5T A;  4AGT A;  3CYE A;  1CRU A;  2AEQ A;  3VNG A;  5D9B A;  7NN9 A;  4QN3 A;  5FZN A;  2ZW9 A;  2YA4 A;  1N6D A;  2WOZ A;  3Q6K A;  2F13 A;  5F9T A;  4K1I A;  4KS1 A;  1W20 A;  1WP5 A;  4GNA A;  3SIL A;  1USR A;  3O9J A;  3V65 B;  1MS1 A;  2QWF A;  3TI8 A;  2HTV A;  2XN4 A;  4AHA A;  1V2I A;  5EO7 A;  4O5S A;  3PJQ A;  4FPY A;  2W38 A;  1W1X A;  4XOG A;  3TI5 A;  3H6J A;  4CPO A;  1Z4Y A;  1C5K A;  3VNH A;  4KS4 A;  2FHR A;  4H53 A;  1IVC A;  3S8Z A;  1POO A;  2QWA A;  4R40 A;  4XHX A;  4XJA A;  1N7D A;  1BJI A;  2HU0 A;  3FVZ A;  4YW4 A;  2VK5 A;  4NN9 A;  1N1T A;  4Q1U A;  3ALW A;  3K39 A;  2IAO A;  1IVB A;  3SOB B;  4X6K A;  5EX7 A;  1S0J A;  4MZA A;  4YW2 A;  1INF A;  4XIL A;  4NCS A;  2F24 A;  5HUM A;  2QE8 A;  2POO A;  2C4L A;  2Z32 A;  4QN5 A;  3D12 A;  4ZGC A;  4WEG A;  5JYY A;  1X2R A;  4BBW A;  4MJU A;  4QN6 A;  1V0F A;  4L7C A;  1S18 A;  4ZLR A;  1E8U A;  3SRG A;  5B2D A;  5FZJ A;  4XJU A;  4GZT A;  3T1E A;  2YA7 A;  5B2C A;  1ZGK A;  2BAT A;  3A71 A;  3E5Z A;  1X2J A;  4WA5 A;  3NSS A;  2DG1 A;  2VVZ A;  2AGS A;  4ZY3 A;  4GN7 A;  4IQK A;  3TIA A;  4MWX A;  2F10 A;  2HQS A;  2H2U A;  2XCY A;  2IAP A;  3DR2 A;  4FPO B;  2F26 A;  4XIK A;  4Q6K A;  5GX5 A;  3SOV A;  1A4Q A;  2IAV A;  2XZI A;  5FNU A;  3G4H A;  5GX3 A;  4PWZ A;  4MWU A;  3K37 A;  2HTQ A;  1V0Z A;  2QWJ A;  1B9T A;  4A0P A;  4HZZ A;  1Z4W A;  4AH4 A;  4MWV A;  2XZK A;  2QWD A;  4M3M A;  1L7H A;  3GVJ A;  2ZZK A;  1V3D A;  2HTW A;  3S2K A;  4GEZ A;  2AEP A;  3A9G A;  2F29 A;  3HLH A;  2CML A;  3ZGD A;  3LI4 A;  4CH9 A;  2F0Z A;  3SLI A;  2GVX A;  5M1Z A;  1RWL A;  3W09 A;  3ALX A;  1EUT A;  2W8B A;  4GDI A;  3SRE A;  5GX4 A;  1IJQ A;  4X49 A;  4CPZ A;  3WW9 A;  3DAS A;  2YA5 A;  2DYH A;  3JU4 A;  2IAS A;  4CPN A;  3KYA A;  3H73 A;  4HIZ A;  2JKB A;  3O9K A;  4D4U A;  3LI5 A;  4GZS A;  2BZD A;  1V0E A;  4FOV A;  4B7N A;  5D9C A;  1MS4 A;  3UC1 A;  1V3C A;  1DIL A;  1A4G A;  2F12 A;  3TIB A;  4HZY A;  4XJQ A;  1W8O A;  4NC5 A;  5FNT A;  1SLI A;  4FJ6 A;  5GX2 A;  1V3E A;  1WCS A;  4X4A A;  4WA3 A;  2HT8 A;  1NNB A;  4N1B A;  4YW1 A;  1N1Y A;  6NN9 A;  4GB1 A;  2X9M A;  1MS0 A;  3D11 A;  1USX A;  4XMA A;  4GDJ A;  2HT5 A;  4MWL A;  3H71 A;  2VK6 A;  4YY8 A;  3KGG A;  1MS9 A;  4YZ2 A;  4GNC A;  1SLL A;  2ZWA A;  2SLI A;  3BEQ A;  1V04 A;  5EO8 A;  1NCB N;  1W8N A;  1V3B A;  3A72 A;  2HT7 A;  4CPM A;  1L7F A;  1CRZ A;  1Q7F A;  1MWE A;  3ADE A;  5HUN A;  4QN4 A;  4XYX A;  1XOG A;  1NCA N;  3TI6 A;  4JF7 A;  3S8V A;  4X47 A;  2VPJ A;  4FOW A;  1MS3 A;  4IFL X;  3FW0 A;  2GVV A;  3BYC A;  1INY A;  4G3N A;  3U0S A;  1NNA A;  3GVK A;  4FOY A;  1K32 A;  2OJH A;  4K3Y A;  4FPK A;  1QLG A;  3TI4 A;  4GZP A;  4D8S A;  4IMB A;  2BER A;  4UOU A;  5GX1 A;  3H72 A;  4XJR A;  1E1A A;  4B7Q A; 
#chains in the Genus database with same CATH homology
 4C1Y A;  1IUB A;  5H47 A;  1OFZ A;  4AHA A;  5EO8 A;  4D4U A;  5EO7 A;  4C1Y B;  4AH4 A;  4D52 A;  4UOU A;  4AGI A;  4D52 C;  4CSD A;  4D52 B;  4AGT A;  1IUC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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