5EO8 | Genus

Total Genus 73

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	73
sequence length	311
structure length	311
Chain Sequence	MSTPGAQEVLFRTGIAAVNSTNHLRVYFQDSHGSIRESLYESGWANGTAKNVIAKAKLGTPLAATSKELKNIRVYSLTEDNVLQEAAYDSGSGWYNGALAGAKFTVAPYSRIGSVFLAGTNALQLRIYAQKTDNTIQEYMWNGDGWKEGTNLGVALPGTGIGVTCWRYTDYDGPSIRVWFQTDNLKLVQRAYDPHTGWYKELTTIFDKAPPRCAIAATNFNPGKSSIYMRIYFVNSDNTIWQVCWDHGQGYHDKRTITPVIQGSEIAIISWEGPELRLYFQNGTYVSAISEWTWGKAHGSQLGRRALPPAE

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Sugar binding protein
source organism	Aspergillus oryzae rib40
publication title	Six independent fucose-binding sites in the crystal structure of Aspergillus oryzae lectin pubmed doi rcsb
molecule keywords	Predicted protein
total genus	73
structure length	311
sequence length	311
ec nomenclature
pdb deposition date	2015-11-10

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF07938	Fungal_lectin	Fungal fucose-specific lectin

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.120.10.70	Mainly Beta	6 Propeller	Neuraminidase	Fucose-specific lectin	5eo8A00

4AGTA 4AHAA 5H47A 5EO8A 1IUCA 4AH4A 4D4UA 4D52B 4C1YB 4D52A 1IUBA 4AGIA 4CSDA 5EO7A 4D52C 4UOUA 4C1YA 1OFZA
chains in the Genus database with same CATH superfamily

3A71A 4GN7A 2FP9A 3JU4A 4AH4A 4MWLA 3TI8A 2FPCA 5GX1A 4FPFA 2Z32A 4GN9A 1SLIA 5FWWA 4CH9A 1C5KA 1V0FA 4HZYA 2H2UA 2VW0A 2F11A 1NMBN 1MS4A 2HTRA 3A72A 1IVDA 4XJ8A 4MZEA 1F8EA 4XJZA 4M4VA 1MS3A 2F0ZA 3A9HA 2QWBA 4FPKA 4X49A 1NNAA 4D8SA 1NCAN 3GVKA 3TIAA 2HT8A 3SOQA 6NN9A 1B9SA 1KITA 4K1IA 4K1HA 4B7RA 3TI4A 1CVMA 2W38A 1SNTA 2DG1A 1IJQA 5FNUA 1EUTA 4J9TA 2QWEA 4ZY3A 1E8TA 2CMLA 2F29A 3V65B 3K36A 2SIMA 1V04A 4B7QA 2BERA 2A75A 2VPJA 4YW5A 4MWVA 1IUBA 2F10A 1OFZA 2QWDA 2F28A 4XHBA 1NCDN 3PJQA 1V0EA 2VW2A 3TI3A 3UC1A 4AGTA 2W5OA 4YW2A 5JYYA 4FPCA 4HZWA 4ASCA 3SRGA 4BBWA 4QN6A 5D9BA 4FJ6A 4FPOB 1W0PA 3KYAA 2F12A 3ALXA 2YA5A 2IASA 3H73A 2VSKA 3KGGA 3LI3A 4WEGA 4YZ2A 4IQKA 2H2NA 5GX4A 1DILA 2X9MA 4WA4A 4FOWA 4GNBA 1INFA 1INVA 4QN4A 3SALA 5B2CA 1Z50A 4CHBA 5HUNA 4ZLRA 1E8UA 3SLIA 4FPJA 4M3MA 4HHQA 3B69A 4K1KA 4XIKA 3TI5A 3K3AA 1IVCA 2HTVA 4FVKA 4XMAA 1Z4WA 1NMCA 2GVWA 3FW0A 2QE8A 4G3NA 4M4UA 2SLIA 4YW1A 3Q6TA 4GZQA 4QN7A 4I00A 4C1YB 4FP2A 3WW9A 4FQ4A 5B2DA 1NN2A 4JF7A 4R40A 1K32A 5M1ZA 3H6JA 3Q6PA 1B9VA 4MWXA 5FNSA 2ISMA 1F8BA 1N1TA 4FPYA 4UF7A 4PWZA 2HTQA 2YA6A 3TIBA 5HUMA 2DYHA 4GZTA 5D9CA 1INYA 1MS9A 2BF6A 3SILA 1MS8A 4CPMA 3WN7A 1W8OA 4KS2A 3BEQA 1L7FA 2AGSA 1V3BA 4YZ5A 4XJ9A 1W0OA 2ZWAA 2GVUA 3ZGDA 4AHAA 3TC9A 3SOVA 4MJVA 4MJUA 2QWHA 2ZB6A 4CPYA 3OPZA 4FOYA 5FZJA 1EUSA 1INGA 3NO0A 1DIMA 1MS1A 4CPNA 3O9JA 4WA5A 4YW3A 3O9KA 2F27A 1W1XA 2ZW9A 4XJUA 4KS5A 4K1JA 3HLIA 4FPGA 4GZSA 2QWKA 4IN4A 3S8VA 2GHSA 2VVZA 3NSSA 1E1AA 2P4OA 3SREA 2FLUX 1V3CA 4X47A 1QLGA 1QBIA 2F13A 4XYXA 4MWQA 4XIOA 4NCSA 5HUGA 2AH2A 2FHRA 1W20A 3V64C 1N1VA 2IAWA 1N1YA 1Z4YA 2HT5A 1Q7FA 1L7HA 2IAVA 3SOBB 1B9TA 1MS5A 1NMAN 1NSCA 4B7MA 3CL0A 1EUUA 1NPEA 2XN4A 5CGJA 1PJXA 3K38A 2IAPA 3DR2A 1VCUA 3G4EA 4HZXA 2HTWA 3CYEA 4FPLA 1MS0A 1NNBA 4XJRA 1V3EA 2IAXA 4DGRA 1INHA 2W8BA 4GEZA 4HW6A 1IVBA 2HT7A 1V2IA 3AMSA 5GX2A 4IFNX 1Z4XA 1WCQA 2YDPA 5HX0A 1CRZA 3DASA 5F72C 4YZ3A 1RWLA 2QWFA 2YA4A 2VW1A 2WOZA 3BYCA 3IAXA 1W8NA 4GZOA 1CQ1A 2VK6A 4Q6KA 1XOEA 1W21A 4H52A 2HTUA 4A0PA 1NSDA 4N1BA 3GVLA 3WWAA 4HHOA 4D52B 3H72A 4YZ4A 2QWAA 4MWRA 4CSDA 3CL2A 1MZ5A 2F26A 1X2JA 2ZB5A 3SANA 2GVXA 4D52C 4DG6A 3NN9A 2C4LA 3ZGCA 5GTQA 3VNGA 2VSMA 1SUUA 4SLIA 4KS3A 4QNPA 1S1DA 2IARA 3CKZA 2IAUA 4GN8A 2DG0A 1NCCN 1INXA 2HQSA 4HZVA 4K3YA 3TICA 4FPEA 3WDZA 4WEFA 4NN9A 4M4NA 4FOQA 4GNCA 1VCJA 4GB1A 1NSBA 2YA7A 4GJTA 4XHXA 4ZGCA 1WP5A 4MC7A 5GX3A 4CPZA 4IMBA 1SLLA 4YZ1A 1S0IA 3D12A 4QN3A 3S2KA 3U0SA 4MZAA 3D11A 4UOUA 3P5BL 1S0JA 2B8HA 4MWUA 3S8ZA 1F8DA 1V3DA 5NN9A 4GNAA 2AEQA 5EO8A 4XILA 4HZZA 2POOA 1E8VA 2IAQA 5EX7A 1IUCA 4MWWA 1A14N 2W5NA 2BATA 2XCYA 1N6FA 4FOVA 3INBA 5D9DA 2AEPA 2VK7A 1BJIA 4AGIA 3T1EA 5F9TA 1F8CA 2IATA 2SILA 1ZGKA 5HUKA 2QWGA 3H71A 5GX5A 2DSOA 2QWCA 4YW4A 1H6LA 4HIZA 3TI6A 3O4PA 1SO7A 1U6DX 2YA8A 4MWYA 4XJAA 4CPLA 3ADEA 4O5TA 1IVEA 2ZZKA 4GZPA 5H47A 4XJQA 2XZJA 3HRPA 4B7NA 4O5SA 4XOGA 3W09A 1V0ZA 3Q6KA 1USRA 1N1SA 1RWIA 2IAOA 1A4GA 5FNTA 4L7DA 4MX0A 3G4HA 3I1CA 5FNRA 2W8BB 2VK5A 1WCSA 4Q1UA 4KS1A 4FP3A 4WA3A 3E5ZA 2F25A 5FZNA 2JKBA 3LI5A 1C9UA 4XMIA 1IVGA 1S18A 1USXA 1CRUA 3S94A 1N6EA 2FP8A 3ALWA 1MR5A 2C4AA 1X2RA 2XZKA 3II7A 4B7JA 2HU4A 4MWJA 2GVVA 2VWDA 1NNCA 2F24A 1EURA 2XZIA 3FVZA 5EO7A 4QN5A 1MWEA 4H53A 4JMLA 4XE9A 1Z4ZA 4D52A 2W20A 4IFLX 4L7CA 4XJWA 3VNHA 1MZ6A 2YDTA 3HLHA 4C1YA 4IYGA 4XMBA 3AMRA 3V1SA 1IVFA 4FZHA 1N6DA 3A9GA 3K37A 2QWIA 1INWA 4GZWA 2HU0A 4GDIA 1N7DA 2RKCA 4KS4A 1Z4VA 3GVJA 4X4AA 4X6KA 1NCBN 4YY8A 4GZXA 4FPHA 2G8SA 1XOGA 3B7EA 1A4QA 4GDJA 2V91A 2FPBA 2IVZA 1POOA 4D4UA 2QWJA 7NN9A 4L7BA 3K39A 4NC5A 2BZDA 2HTYA 2VAQA 4CPOA 3L6VA 3LI4A 1L7GA 1ZI0A 2OJHA 4IFJA 5FNQA
chains in the Genus database with same CATH topology

4AGTA 4AHAA 5H47A 5EO8A 1IUCA 4AH4A 4D4UA 4D52B 4C1YB 4D52A 1IUBA 4AGIA 4CSDA 5EO7A 4D52C 4UOUA 4C1YA 1OFZA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4AGT A;  4AHA A;  5H47 A;  5EO8 A;  1IUC A;  4AH4 A;  4D4U A;  4D52 B;  4C1Y B;  4D52 A;  1IUB A;  4AGI A;  4CSD A;  5EO7 A;  4D52 C;  4UOU A;  4C1Y A;  1OFZ A; 
#chains in the Genus database with same CATH topology
 3A71 A;  4GN7 A;  2FP9 A;  3JU4 A;  4AH4 A;  4MWL A;  3TI8 A;  2FPC A;  5GX1 A;  4FPF A;  2Z32 A;  4GN9 A;  1SLI A;  5FWW A;  4CH9 A;  1C5K A;  1V0F A;  4HZY A;  2H2U A;  2VW0 A;  2F11 A;  1NMB N;  1MS4 A;  2HTR A;  3A72 A;  1IVD A;  4XJ8 A;  4MZE A;  1F8E A;  4XJZ A;  4M4V A;  1MS3 A;  2F0Z A;  3A9H A;  2QWB A;  4FPK A;  4X49 A;  1NNA A;  4D8S A;  1NCA N;  3GVK A;  3TIA A;  2HT8 A;  3SOQ A;  6NN9 A;  1B9S A;  1KIT A;  4K1I A;  4K1H A;  4B7R A;  3TI4 A;  1CVM A;  2W38 A;  1SNT A;  2DG1 A;  1IJQ A;  5FNU A;  1EUT A;  4J9T A;  2QWE A;  4ZY3 A;  1E8T A;  2CML A;  2F29 A;  3V65 B;  3K36 A;  2SIM A;  1V04 A;  4B7Q A;  2BER A;  2A75 A;  2VPJ A;  4YW5 A;  4MWV A;  1IUB A;  2F10 A;  1OFZ A;  2QWD A;  2F28 A;  4XHB A;  1NCD N;  3PJQ A;  1V0E A;  2VW2 A;  3TI3 A;  3UC1 A;  4AGT A;  2W5O A;  4YW2 A;  5JYY A;  4FPC A;  4HZW A;  4ASC A;  3SRG A;  4BBW A;  4QN6 A;  5D9B A;  4FJ6 A;  4FPO B;  1W0P A;  3KYA A;  2F12 A;  3ALX A;  2YA5 A;  2IAS A;  3H73 A;  2VSK A;  3KGG A;  3LI3 A;  4WEG A;  4YZ2 A;  4IQK A;  2H2N A;  5GX4 A;  1DIL A;  2X9M A;  4WA4 A;  4FOW A;  4GNB A;  1INF A;  1INV A;  4QN4 A;  3SAL A;  5B2C A;  1Z50 A;  4CHB A;  5HUN A;  4ZLR A;  1E8U A;  3SLI A;  4FPJ A;  4M3M A;  4HHQ A;  3B69 A;  4K1K A;  4XIK A;  3TI5 A;  3K3A A;  1IVC A;  2HTV A;  4FVK A;  4XMA A;  1Z4W A;  1NMC A;  2GVW A;  3FW0 A;  2QE8 A;  4G3N A;  4M4U A;  2SLI A;  4YW1 A;  3Q6T A;  4GZQ A;  4QN7 A;  4I00 A;  4C1Y B;  4FP2 A;  3WW9 A;  4FQ4 A;  5B2D A;  1NN2 A;  4JF7 A;  4R40 A;  1K32 A;  5M1Z A;  3H6J A;  3Q6P A;  1B9V A;  4MWX A;  5FNS A;  2ISM A;  1F8B A;  1N1T A;  4FPY A;  4UF7 A;  4PWZ A;  2HTQ A;  2YA6 A;  3TIB A;  5HUM A;  2DYH A;  4GZT A;  5D9C A;  1INY A;  1MS9 A;  2BF6 A;  3SIL A;  1MS8 A;  4CPM A;  3WN7 A;  1W8O A;  4KS2 A;  3BEQ A;  1L7F A;  2AGS A;  1V3B A;  4YZ5 A;  4XJ9 A;  1W0O A;  2ZWA A;  2GVU A;  3ZGD A;  4AHA A;  3TC9 A;  3SOV A;  4MJV A;  4MJU A;  2QWH A;  2ZB6 A;  4CPY A;  3OPZ A;  4FOY A;  5FZJ A;  1EUS A;  1ING A;  3NO0 A;  1DIM A;  1MS1 A;  4CPN A;  3O9J A;  4WA5 A;  4YW3 A;  3O9K A;  2F27 A;  1W1X A;  2ZW9 A;  4XJU A;  4KS5 A;  4K1J A;  3HLI A;  4FPG A;  4GZS A;  2QWK A;  4IN4 A;  3S8V A;  2GHS A;  2VVZ A;  3NSS A;  1E1A A;  2P4O A;  3SRE A;  2FLU X;  1V3C A;  4X47 A;  1QLG A;  1QBI A;  2F13 A;  4XYX A;  4MWQ A;  4XIO A;  4NCS A;  5HUG A;  2AH2 A;  2FHR A;  1W20 A;  3V64 C;  1N1V A;  2IAW A;  1N1Y A;  1Z4Y A;  2HT5 A;  1Q7F A;  1L7H A;  2IAV A;  3SOB B;  1B9T A;  1MS5 A;  1NMA N;  1NSC A;  4B7M A;  3CL0 A;  1EUU A;  1NPE A;  2XN4 A;  5CGJ A;  1PJX A;  3K38 A;  2IAP A;  3DR2 A;  1VCU A;  3G4E A;  4HZX A;  2HTW A;  3CYE A;  4FPL A;  1MS0 A;  1NNB A;  4XJR A;  1V3E A;  2IAX A;  4DGR A;  1INH A;  2W8B A;  4GEZ A;  4HW6 A;  1IVB A;  2HT7 A;  1V2I A;  3AMS A;  5GX2 A;  4IFN X;  1Z4X A;  1WCQ A;  2YDP A;  5HX0 A;  1CRZ A;  3DAS A;  5F72 C;  4YZ3 A;  1RWL A;  2QWF A;  2YA4 A;  2VW1 A;  2WOZ A;  3BYC A;  3IAX A;  1W8N A;  4GZO A;  1CQ1 A;  2VK6 A;  4Q6K A;  1XOE A;  1W21 A;  4H52 A;  2HTU A;  4A0P A;  1NSD A;  4N1B A;  3GVL A;  3WWA A;  4HHO A;  4D52 B;  3H72 A;  4YZ4 A;  2QWA A;  4MWR A;  4CSD A;  3CL2 A;  1MZ5 A;  2F26 A;  1X2J A;  2ZB5 A;  3SAN A;  2GVX A;  4D52 C;  4DG6 A;  3NN9 A;  2C4L A;  3ZGC A;  5GTQ A;  3VNG A;  2VSM A;  1SUU A;  4SLI A;  4KS3 A;  4QNP A;  1S1D A;  2IAR A;  3CKZ A;  2IAU A;  4GN8 A;  2DG0 A;  1NCC N;  1INX A;  2HQS A;  4HZV A;  4K3Y A;  3TIC A;  4FPE A;  3WDZ A;  4WEF A;  4NN9 A;  4M4N A;  4FOQ A;  4GNC A;  1VCJ A;  4GB1 A;  1NSB A;  2YA7 A;  4GJT A;  4XHX A;  4ZGC A;  1WP5 A;  4MC7 A;  5GX3 A;  4CPZ A;  4IMB A;  1SLL A;  4YZ1 A;  1S0I A;  3D12 A;  4QN3 A;  3S2K A;  3U0S A;  4MZA A;  3D11 A;  4UOU A;  3P5B L;  1S0J A;  2B8H A;  4MWU A;  3S8Z A;  1F8D A;  1V3D A;  5NN9 A;  4GNA A;  2AEQ A;  5EO8 A;  4XIL A;  4HZZ A;  2POO A;  1E8V A;  2IAQ A;  5EX7 A;  1IUC A;  4MWW A;  1A14 N;  2W5N A;  2BAT A;  2XCY A;  1N6F A;  4FOV A;  3INB A;  5D9D A;  2AEP A;  2VK7 A;  1BJI A;  4AGI A;  3T1E A;  5F9T A;  1F8C A;  2IAT A;  2SIL A;  1ZGK A;  5HUK A;  2QWG A;  3H71 A;  5GX5 A;  2DSO A;  2QWC A;  4YW4 A;  1H6L A;  4HIZ A;  3TI6 A;  3O4P A;  1SO7 A;  1U6D X;  2YA8 A;  4MWY A;  4XJA A;  4CPL A;  3ADE A;  4O5T A;  1IVE A;  2ZZK A;  4GZP A;  5H47 A;  4XJQ A;  2XZJ A;  3HRP A;  4B7N A;  4O5S A;  4XOG A;  3W09 A;  1V0Z A;  3Q6K A;  1USR A;  1N1S A;  1RWI A;  2IAO A;  1A4G A;  5FNT A;  4L7D A;  4MX0 A;  3G4H A;  3I1C A;  5FNR A;  2W8B B;  2VK5 A;  1WCS A;  4Q1U A;  4KS1 A;  4FP3 A;  4WA3 A;  3E5Z A;  2F25 A;  5FZN A;  2JKB A;  3LI5 A;  1C9U A;  4XMI A;  1IVG A;  1S18 A;  1USX A;  1CRU A;  3S94 A;  1N6E A;  2FP8 A;  3ALW A;  1MR5 A;  2C4A A;  1X2R A;  2XZK A;  3II7 A;  4B7J A;  2HU4 A;  4MWJ A;  2GVV A;  2VWD A;  1NNC A;  2F24 A;  1EUR A;  2XZI A;  3FVZ A;  5EO7 A;  4QN5 A;  1MWE A;  4H53 A;  4JML A;  4XE9 A;  1Z4Z A;  4D52 A;  2W20 A;  4IFL X;  4L7C A;  4XJW A;  3VNH A;  1MZ6 A;  2YDT A;  3HLH A;  4C1Y A;  4IYG A;  4XMB A;  3AMR A;  3V1S A;  1IVF A;  4FZH A;  1N6D A;  3A9G A;  3K37 A;  2QWI A;  1INW A;  4GZW A;  2HU0 A;  4GDI A;  1N7D A;  2RKC A;  4KS4 A;  1Z4V A;  3GVJ A;  4X4A A;  4X6K A;  1NCB N;  4YY8 A;  4GZX A;  4FPH A;  2G8S A;  1XOG A;  3B7E A;  1A4Q A;  4GDJ A;  2V91 A;  2FPB A;  2IVZ A;  1POO A;  4D4U A;  2QWJ A;  7NN9 A;  4L7B A;  3K39 A;  4NC5 A;  2BZD A;  2HTY A;  2VAQ A;  4CPO A;  3L6V A;  3LI4 A;  1L7G A;  1ZI0 A;  2OJH A;  4IFJ A;  5FNQ A; 
#chains in the Genus database with same CATH homology
 4AGT A;  4AHA A;  5H47 A;  5EO8 A;  1IUC A;  4AH4 A;  4D4U A;  4D52 B;  4C1Y B;  4D52 A;  1IUB A;  4AGI A;  4CSD A;  5EO7 A;  4D52 C;  4UOU A;  4C1Y A;  1OFZ A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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5EO8A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations