5H47 | Genus

Total Genus 79

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	79
sequence length	310
structure length	310
Chain Sequence	STPGAQEVLFRTGIAAVNSTNHLRVYFQDSHGSIRESLYESGWANGTAKNVIAKAKLGTPLAATSKELKNIRVYSLTEDNVLQEAAYDSGSGWYNGALAGAKFTVAPYSRIGSVFLAGTNALQLRIYAQKTDNTIQEYMWNGDGWKEGTNLGVALPGTGIGVTCWRYTDYDGPSIRVWFQTDNLKLVQRAYDPHTGWYKELTTIFDKAPPRCAIAATNFNPGKSSIYMRIYFVNSDNTIWQVCWDHGQGYHDKRTITPVIQGSEIAIISWEGPELRLYFQNGTYVSAISEWTWGKAHGSQLGRRALPPAE

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Sugar binding protein
source organism	Aspergillus oryzae rib40
publication title	Synthesis of seleno-fucose compounds and their application to the X-ray structural determination of carbohydrate-lectin complexes using single/multi-wavelength anomalous dispersion phasing pubmed doi rcsb
molecule keywords	Uncharacterized protein
total genus	79
structure length	310
sequence length	310
chains with identical sequence	B, C, D, E, F, G, H, I, J, K, L
ec nomenclature
pdb deposition date	2016-10-31

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF07938	Fungal_lectin	Fungal fucose-specific lectin

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.120.10.70	Mainly Beta	6 Propeller	Neuraminidase	Fucose-specific lectin	5h47A00

1IUCA 4AGTA 4CSDA 5H47A 5EO8A 4UOUA 4D52C 4D4UA 5EO7A 4AGIA 4AHAA 1IUBA 1OFZA 4AH4A 4C1YB 4D52B 4D52A 4C1YA
chains in the Genus database with same CATH superfamily

2ZB5A 3S8VA 3LI5A 3SOBB 3H6JA 2HTRA 2QWKA 4XJWA 4NC5A 2IASA 5CGJA 4Q6KA 5GX2A 3G4EA 1NSBA 2VSMA 1W0OA 1A4QA 2QWFA 1INHA 5GX5A 2VSKA 3NO0A 3II7A 3NSSA 1OFZA 2DSOA 4JF7A 4MWLA 1MZ5A 3SOVA 5GX1A 1DIMA 1V3DA 1MZ6A 4FPKA 1NCCN 2QE8A 2IAUA 1CRZA 4O5SA 2F24A 1MS0A 1KITA 1V0FA 2DG1A 4HHOA 3GVLA 7NN9A 4IN4A 2HU0A 4KS1A 4XOGA 2W20A 4FPYA 3I1CA 4H53A 3O9JA 3V64C 5F9TA 1ZGKA 4XJUA 2XN4A 4CH9A 4XJ8A 4QN7A 3KGGA 2YA7A 5FNUA 1NNAA 1INYA 5EO8A 4YW3A 1NNCA 4MWYA 1N7DA 1WCQA 4MWXA 3P5BL 4MWVA 2VPJA 4ZY3A 1EUUA 4UF7A 4YW5A 2VK5A 4X49A 1IJQA 4X4AA 3H72A 4G3NA 4CPOA 4FZHA 1S18A 2GVUA 2FHRA 3T1EA 4XIOA 4FOVA 4AGTA 3DR2A 5F72C 4HZZA 4CPZA 1X2RA 1S0JA 3WN7A 2FP9A 4DG6A 4I00A 5FNTA 3TI4A 1E1AA 4ZLRA 6NN9A 4B7NA 4WA5A 4YZ5A 2W8BB 3AMRA 1MS1A 1V3BA 4WA3A 3K38A 4HW6A 3PJQA 3ADEA 4QNPA 2DG0A 4YY8A 1VCJA 4FOQA 1NSDA 2YA6A 3SOQA 1WCSA 4CPLA 1Z4WA 4GB1A 4GNBA 4HZVA 2QWJA 3FW0A 3LI3A 4GZQA 1B9SA 1NSCA 2FPBA 2V91A 3TICA 4IMBA 3HRPA 1VCUA 1USRA 3K37A 2SLIA 4GJTA 4B7MA 1INXA 4K1JA 3K3AA 1V04A 4HZXA 4FPFA 1C9UA 2F27A 4QN4A 2F11A 4IFLX 1IVBA 1Z4ZA 2IAVA 2YA8A 2F25A 2QWHA 2IARA 1V0EA 4XMBA 4FP2A 4GZSA 1E8UA 1V3EA 2QWEA 4NN9A 5M1ZA 4XYXA 2F10A 2H2UA 5HUKA 3WW9A 3IAXA 4GZTA 4IFNX 2HQSA 4C1YA 4YW4A 3CKZA 4YW1A 2VVZA 1S0IA 2W38A 4ASCA 2G8SA 3H71A 3LI4A 4K3YA 1W1XA 2HTUA 1INGA 4A0PA 1IUBA 1NMBN 4HZWA 3A9HA 4XHBA 2YA5A 5FZJA 1A4GA 4HZYA 1PJXA 1B9VA 4GN9A 1IUCA 2IVZA 1E8TA 2F0ZA 3AMSA 3KYAA 1POOA 1X2JA 1MS4A 2QWAA 4B7QA 4CPMA 2VK6A 4X47A 4WEGA 1L7FA 1W8NA 4AGIA 2X9MA 4GDIA 4DGRA 4YZ2A 4MX0A 1W8OA 1Q7FA 4GZWA 4KS4A 2DYHA 1QBIA 3ALXA 2C4LA 3B69A 1W21A 1NMAN 2ZB6A 2GVVA 2B8HA 5FZNA 2Z32A 1V0ZA 1C5KA 4WEFA 1N6DA 2FP8A 1MS3A 1DILA 3TI3A 4IQKA 4XHXA 1L7HA 4XJAA 4D4UA 4UOUA 4AHAA 2HT8A 1Z50A 4FPOB 2F13A 3UC1A 4K1KA 1IVFA 3A71A 4YZ3A 3VNGA 5EX7A 2W5OA 4FP3A 5GX3A 2SIMA 1N1TA 4Q1UA 2VWDA 3TIBA 1B9TA 3BEQA 2OJHA 2ZWAA 4ZGCA 4CSDA 4HIZA 4L7DA 4O5TA 2HT7A 5FNSA 4B7JA 2BERA 5HX0A 4FJ6A 5EO7A 4YZ4A 4C1YB 2F12A 4FPHA 1CQ1A 3E5ZA 4MWRA 5GTQA 4MWWA 3U0SA 2VK7A 2QWBA 3TIAA 1F8DA 4XMAA 2IAOA 3BYCA 3TI5A 5D9DA 1IVGA 4D52A 1F8BA 2VW0A 2ZW9A 4WA4A 5B2DA 4QN6A 3D11A 4QN3A 2AEQA 2BATA 5B2CA 1SLLA 4X6KA 2YDTA 2GVWA 2QWGA 4FPEA 4PWZA 1INWA 3Q6KA 2SILA 1NCAN 3K36A 1EURA 5HUGA 1INVA 1RWIA 1BJIA 2GHSA 2P4OA 4BBWA 2HU4A 3Q6PA 5D9CA 1EUSA 3SRGA 4CHBA 3SANA 4D52C 3DASA 4XJZA 4GEZA 2GVXA 2HTWA 2VAQA 3ZGDA 2IATA 3A9GA 3B7EA 1IVDA 4MZAA 3VNHA 3WDZA 4FVKA 1IVCA 1F8EA 2F26A 4GZXA 4MZEA 1N1SA 2AEPA 4GNCA 4L7CA 3O4PA 4MWJA 5D9BA 1F8CA 2ZZKA 2HT5A 3L6VA 1INFA 1NNBA 1ZI0A 5JYYA 4XJQA 2XZJA 4MWQA 4IFJA 1NMCA 2FLUX 3S2KA 1S1DA 2A75A 2AH2A 3O9KA 4MC7A 4XILA 2F28A 4L7BA 3SILA 3SLIA 1SUUA 2HTQA 3HLHA 3G4HA 4AH4A 4M4VA 1Z4VA 4HHQA 1W0PA 3W09A 2QWCA 4XMIA 4KS2A 1MS9A 2HTYA 4YZ1A 3D12A 2WOZA 3NN9A 1CRUA 1N6FA 2AGSA 1SNTA 3SREA 3ZGCA 1K32A 4FOWA 4YW2A 2VW2A 3GVJA 4QN5A 4GZOA 4R40A 3TI8A 2YDPA 4XIKA 5H47A 3V1SA 4D52B 2RKCA 4GN8A 5GX4A 4KS5A 4FPJA 1MWEA 4IYGA 3CYEA 3WWAA 3A72A 2XZKA 4M4UA 4CPNA 2C4AA 1W20A 4GDJA 4GNAA 4GZPA 4MWUA 4MJUA 1U6DX 1NCDN 2BZDA 4B7RA 1XOGA 4KS3A 1WP5A 4K1IA 3OPZA 4FQ4A 3TI6A 2IAPA 2F29A 3Q6TA 2BF6A 4FPGA 1XOEA 1QLGA 2FPCA 4CPYA 2QWDA 2XZIA 1USXA 4FPCA 1E8VA 1NN2A 4XE9A 3GVKA 3S8ZA 3S94A 4GN7A 2POOA 1NPEA 2YA4A 1H6LA 4K1HA 2JKBA 4M4NA 2W5NA 2IAWA 1RWLA 1MR5A 2XCYA 4NCSA 1NCBN 5HUMA 4FPLA 4MJVA 4D8SA 1SLIA 1N1VA 3CL0A 3FVZA 1V3CA 1EUTA 1IVEA 5FNQA 3SALA 1CVMA 1N6EA 3CL2A 2H2NA 3V65B 4M3MA 3HLIA 2QWIA 5HUNA 3TC9A 4JMLA 1MS5A 3JU4A 2VW1A 2HTVA 4XJ9A 2ISMA 2CMLA 1V2IA 3H73A 2IAQA 4SLIA 4XJRA 3K39A 4H52A 4J9TA 4N1BA 1N1YA 4FOYA 5NN9A 1MS8A 5FNRA 1SO7A 1Z4YA 3ALWA 1A14N 3INBA 2W8BA 2IAXA 1L7GA 1Z4XA 5FWWA
chains in the Genus database with same CATH topology

1IUCA 4AGTA 4CSDA 5H47A 5EO8A 4UOUA 4D52C 4D4UA 5EO7A 4AGIA 4AHAA 1IUBA 1OFZA 4AH4A 4C1YB 4D52B 4D52A 4C1YA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1IUC A;  4AGT A;  4CSD A;  5H47 A;  5EO8 A;  4UOU A;  4D52 C;  4D4U A;  5EO7 A;  4AGI A;  4AHA A;  1IUB A;  1OFZ A;  4AH4 A;  4C1Y B;  4D52 B;  4D52 A;  4C1Y A; 
#chains in the Genus database with same CATH topology
 2ZB5 A;  3S8V A;  3LI5 A;  3SOB B;  3H6J A;  2HTR A;  2QWK A;  4XJW A;  4NC5 A;  2IAS A;  5CGJ A;  4Q6K A;  5GX2 A;  3G4E A;  1NSB A;  2VSM A;  1W0O A;  1A4Q A;  2QWF A;  1INH A;  5GX5 A;  2VSK A;  3NO0 A;  3II7 A;  3NSS A;  1OFZ A;  2DSO A;  4JF7 A;  4MWL A;  1MZ5 A;  3SOV A;  5GX1 A;  1DIM A;  1V3D A;  1MZ6 A;  4FPK A;  1NCC N;  2QE8 A;  2IAU A;  1CRZ A;  4O5S A;  2F24 A;  1MS0 A;  1KIT A;  1V0F A;  2DG1 A;  4HHO A;  3GVL A;  7NN9 A;  4IN4 A;  2HU0 A;  4KS1 A;  4XOG A;  2W20 A;  4FPY A;  3I1C A;  4H53 A;  3O9J A;  3V64 C;  5F9T A;  1ZGK A;  4XJU A;  2XN4 A;  4CH9 A;  4XJ8 A;  4QN7 A;  3KGG A;  2YA7 A;  5FNU A;  1NNA A;  1INY A;  5EO8 A;  4YW3 A;  1NNC A;  4MWY A;  1N7D A;  1WCQ A;  4MWX A;  3P5B L;  4MWV A;  2VPJ A;  4ZY3 A;  1EUU A;  4UF7 A;  4YW5 A;  2VK5 A;  4X49 A;  1IJQ A;  4X4A A;  3H72 A;  4G3N A;  4CPO A;  4FZH A;  1S18 A;  2GVU A;  2FHR A;  3T1E A;  4XIO A;  4FOV A;  4AGT A;  3DR2 A;  5F72 C;  4HZZ A;  4CPZ A;  1X2R A;  1S0J A;  3WN7 A;  2FP9 A;  4DG6 A;  4I00 A;  5FNT A;  3TI4 A;  1E1A A;  4ZLR A;  6NN9 A;  4B7N A;  4WA5 A;  4YZ5 A;  2W8B B;  3AMR A;  1MS1 A;  1V3B A;  4WA3 A;  3K38 A;  4HW6 A;  3PJQ A;  3ADE A;  4QNP A;  2DG0 A;  4YY8 A;  1VCJ A;  4FOQ A;  1NSD A;  2YA6 A;  3SOQ A;  1WCS A;  4CPL A;  1Z4W A;  4GB1 A;  4GNB A;  4HZV A;  2QWJ A;  3FW0 A;  3LI3 A;  4GZQ A;  1B9S A;  1NSC A;  2FPB A;  2V91 A;  3TIC A;  4IMB A;  3HRP A;  1VCU A;  1USR A;  3K37 A;  2SLI A;  4GJT A;  4B7M A;  1INX A;  4K1J A;  3K3A A;  1V04 A;  4HZX A;  4FPF A;  1C9U A;  2F27 A;  4QN4 A;  2F11 A;  4IFL X;  1IVB A;  1Z4Z A;  2IAV A;  2YA8 A;  2F25 A;  2QWH A;  2IAR A;  1V0E A;  4XMB A;  4FP2 A;  4GZS A;  1E8U A;  1V3E A;  2QWE A;  4NN9 A;  5M1Z A;  4XYX A;  2F10 A;  2H2U A;  5HUK A;  3WW9 A;  3IAX A;  4GZT A;  4IFN X;  2HQS A;  4C1Y A;  4YW4 A;  3CKZ A;  4YW1 A;  2VVZ A;  1S0I A;  2W38 A;  4ASC A;  2G8S A;  3H71 A;  3LI4 A;  4K3Y A;  1W1X A;  2HTU A;  1ING A;  4A0P A;  1IUB A;  1NMB N;  4HZW A;  3A9H A;  4XHB A;  2YA5 A;  5FZJ A;  1A4G A;  4HZY A;  1PJX A;  1B9V A;  4GN9 A;  1IUC A;  2IVZ A;  1E8T A;  2F0Z A;  3AMS A;  3KYA A;  1POO A;  1X2J A;  1MS4 A;  2QWA A;  4B7Q A;  4CPM A;  2VK6 A;  4X47 A;  4WEG A;  1L7F A;  1W8N A;  4AGI A;  2X9M A;  4GDI A;  4DGR A;  4YZ2 A;  4MX0 A;  1W8O A;  1Q7F A;  4GZW A;  4KS4 A;  2DYH A;  1QBI A;  3ALX A;  2C4L A;  3B69 A;  1W21 A;  1NMA N;  2ZB6 A;  2GVV A;  2B8H A;  5FZN A;  2Z32 A;  1V0Z A;  1C5K A;  4WEF A;  1N6D A;  2FP8 A;  1MS3 A;  1DIL A;  3TI3 A;  4IQK A;  4XHX A;  1L7H A;  4XJA A;  4D4U A;  4UOU A;  4AHA A;  2HT8 A;  1Z50 A;  4FPO B;  2F13 A;  3UC1 A;  4K1K A;  1IVF A;  3A71 A;  4YZ3 A;  3VNG A;  5EX7 A;  2W5O A;  4FP3 A;  5GX3 A;  2SIM A;  1N1T A;  4Q1U A;  2VWD A;  3TIB A;  1B9T A;  3BEQ A;  2OJH A;  2ZWA A;  4ZGC A;  4CSD A;  4HIZ A;  4L7D A;  4O5T A;  2HT7 A;  5FNS A;  4B7J A;  2BER A;  5HX0 A;  4FJ6 A;  5EO7 A;  4YZ4 A;  4C1Y B;  2F12 A;  4FPH A;  1CQ1 A;  3E5Z A;  4MWR A;  5GTQ A;  4MWW A;  3U0S A;  2VK7 A;  2QWB A;  3TIA A;  1F8D A;  4XMA A;  2IAO A;  3BYC A;  3TI5 A;  5D9D A;  1IVG A;  4D52 A;  1F8B A;  2VW0 A;  2ZW9 A;  4WA4 A;  5B2D A;  4QN6 A;  3D11 A;  4QN3 A;  2AEQ A;  2BAT A;  5B2C A;  1SLL A;  4X6K A;  2YDT A;  2GVW A;  2QWG A;  4FPE A;  4PWZ A;  1INW A;  3Q6K A;  2SIL A;  1NCA N;  3K36 A;  1EUR A;  5HUG A;  1INV A;  1RWI A;  1BJI A;  2GHS A;  2P4O A;  4BBW A;  2HU4 A;  3Q6P A;  5D9C A;  1EUS A;  3SRG A;  4CHB A;  3SAN A;  4D52 C;  3DAS A;  4XJZ A;  4GEZ A;  2GVX A;  2HTW A;  2VAQ A;  3ZGD A;  2IAT A;  3A9G A;  3B7E A;  1IVD A;  4MZA A;  3VNH A;  3WDZ A;  4FVK A;  1IVC A;  1F8E A;  2F26 A;  4GZX A;  4MZE A;  1N1S A;  2AEP A;  4GNC A;  4L7C A;  3O4P A;  4MWJ A;  5D9B A;  1F8C A;  2ZZK A;  2HT5 A;  3L6V A;  1INF A;  1NNB A;  1ZI0 A;  5JYY A;  4XJQ A;  2XZJ A;  4MWQ A;  4IFJ A;  1NMC A;  2FLU X;  3S2K A;  1S1D A;  2A75 A;  2AH2 A;  3O9K A;  4MC7 A;  4XIL A;  2F28 A;  4L7B A;  3SIL A;  3SLI A;  1SUU A;  2HTQ A;  3HLH A;  3G4H A;  4AH4 A;  4M4V A;  1Z4V A;  4HHQ A;  1W0P A;  3W09 A;  2QWC A;  4XMI A;  4KS2 A;  1MS9 A;  2HTY A;  4YZ1 A;  3D12 A;  2WOZ A;  3NN9 A;  1CRU A;  1N6F A;  2AGS A;  1SNT A;  3SRE A;  3ZGC A;  1K32 A;  4FOW A;  4YW2 A;  2VW2 A;  3GVJ A;  4QN5 A;  4GZO A;  4R40 A;  3TI8 A;  2YDP A;  4XIK A;  5H47 A;  3V1S A;  4D52 B;  2RKC A;  4GN8 A;  5GX4 A;  4KS5 A;  4FPJ A;  1MWE A;  4IYG A;  3CYE A;  3WWA A;  3A72 A;  2XZK A;  4M4U A;  4CPN A;  2C4A A;  1W20 A;  4GDJ A;  4GNA A;  4GZP A;  4MWU A;  4MJU A;  1U6D X;  1NCD N;  2BZD A;  4B7R A;  1XOG A;  4KS3 A;  1WP5 A;  4K1I A;  3OPZ A;  4FQ4 A;  3TI6 A;  2IAP A;  2F29 A;  3Q6T A;  2BF6 A;  4FPG A;  1XOE A;  1QLG A;  2FPC A;  4CPY A;  2QWD A;  2XZI A;  1USX A;  4FPC A;  1E8V A;  1NN2 A;  4XE9 A;  3GVK A;  3S8Z A;  3S94 A;  4GN7 A;  2POO A;  1NPE A;  2YA4 A;  1H6L A;  4K1H A;  2JKB A;  4M4N A;  2W5N A;  2IAW A;  1RWL A;  1MR5 A;  2XCY A;  4NCS A;  1NCB N;  5HUM A;  4FPL A;  4MJV A;  4D8S A;  1SLI A;  1N1V A;  3CL0 A;  3FVZ A;  1V3C A;  1EUT A;  1IVE A;  5FNQ A;  3SAL A;  1CVM A;  1N6E A;  3CL2 A;  2H2N A;  3V65 B;  4M3M A;  3HLI A;  2QWI A;  5HUN A;  3TC9 A;  4JML A;  1MS5 A;  3JU4 A;  2VW1 A;  2HTV A;  4XJ9 A;  2ISM A;  2CML A;  1V2I A;  3H73 A;  2IAQ A;  4SLI A;  4XJR A;  3K39 A;  4H52 A;  4J9T A;  4N1B A;  1N1Y A;  4FOY A;  5NN9 A;  1MS8 A;  5FNR A;  1SO7 A;  1Z4Y A;  3ALW A;  1A14 N;  3INB A;  2W8B A;  2IAX A;  1L7G A;  1Z4X A;  5FWW A; 
#chains in the Genus database with same CATH homology
 1IUC A;  4AGT A;  4CSD A;  5H47 A;  5EO8 A;  4UOU A;  4D52 C;  4D4U A;  5EO7 A;  4AGI A;  4AHA A;  1IUB A;  1OFZ A;  4AH4 A;  4C1Y B;  4D52 B;  4D52 A;  4C1Y A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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5H47A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations