4D4UA

Crystal structure of fucose binding lectin from aspergillus fumigatus (afl) in complex with lewisy tetrasaccharide.
Total Genus 78
5010015020025030001020304050607080
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
314
structure length
313
Chain Sequence
STPGAQQVLFRTGIAAVNSTNHLRVYFQDVYGSIRESLYEGSWANGTEKNVIGNAKLGSPVAATSKELKHIRVYTLTEGNTLQEFAYDSGTGWYNGGLGGAKFQVAPYSCIAAVFLAGTDALQLRIYAQKPDNTIQEYMWNGDGWKEGTNLGGALPGTGIGATSFRYTDYNGPSIRIWFQTDDLKLVQRAYDPHKGWYPDLVTIFDRAPPRTAIAATSFGAGNSSIYMRIYFVNSDNTIWQVWDHGKGYHDKGTITPVIQGSEVAIISWGSFANNGPDLRLYFQNGTYISAVSEWVWNRAHGSQLGRSALPPA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
3H1 (5-8)TII8 (288-291)TI1 (30-33)S3 (34-40)S23 (276-286)TII1 (10-13)S2 (23-29)S1 (15-20)S22 (266-273)TIV1 (19-22)S6 (62-67)TII2 (57-60)TI2 (48-51)TVIII2 (309-312)TIV2 (40-43)S5 (52-55)S8 (83-89)EMPTYS7 (71-77)S10 (112-116)TIV4 (66-69)TII'2 (67-70)3H2 (99-102)TI5 (107-110)TI6 (131-134)S11 (125-130)TII4 (156-159)S12 (135-141)S13 (146-154)TIV7 (141-144)S16 (187-193)TII5 (210-213)S15 (175-181)S14 (161-166)S18 (215-223)TI7 (168-171)TIV11 (223-226)TII6 (246-249)TI8 (182-185)S19 (226-235)TI11 (235-238)S20 (239-246)S21 (255-259)TIV12 (247-250)TII7 (261-264)TI12 (273-276)S24 (294-300)TIV17 (290-293)TIV16 (289-292)S25 (304-308)TIV18 (300-303)TI4 (78-81)TII3 (89-92)S17 (197-206)TI9 (193-196)S4 (44-46)S9 (93-96)Updating...
connected with : NaN
molecule tags Sugar binding protein
source organism Aspergillus fumigatus
publication title Structural Insights Into Aspergillus Fumigatus Lectin Specificity: Afl Binding Sites are Functionally Non-Equivalent.
pubmed doi rcsb
molecule keywords FUCOSE-SPECIFIC LECTIN FLEA
total genus 78
structure length 313
sequence length 314
chains with identical sequence B
ec nomenclature
pdb deposition date 2014-10-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07938 Fungal_lectin Fungal fucose-specific lectin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.120.10.70 Mainly Beta 6 Propeller Neuraminidase Fucose-specific lectin 4d4uA00
4D4UA 4C1YB 1OFZA 5EO7A 4AHAA 4D52B 4AGIA 1IUCA 4CSDA 5H47A 1IUBA 4C1YA 4D52C 4UOUA 4AGTA 4AH4A 4D52A 5EO8A
chains in the Genus database with same CATH superfamily
2JKBA 2W8BA 1PJXA 3K39A 4WEGA 4HIZA 1QLGA 3S94A 4CPYA 4HZZA 2IASA 2BZDA 3G4EA 4KS4A 4GZWA 2F11A 2W5OA 4ZY3A 2IAWA 3SOBB 3K3AA 4XMBA 4H53A 4K1JA 4QNPA 4HW6A 2VAQA 2A75A 1MZ6A 1XOGA 5GX1A 4GDIA 4N1BA 4GNAA 6NN9A 1S18A 1Z4WA 1W8OA 2YA8A 2POOA 2GVUA 2W38A 2IAOA 4KS5A 4K1IA 4K1HA 2ISMA 5GX5A 2HT8A 1INXA 3A72A 4FOVA 4AHAA 1CRUA 2HTVA 2IAQA 3LI3A 2VK5A 2QWKA 1B9TA 2GVXA 1V3CA 4O5SA 3TIBA 1INVA 4B7JA 2SLIA 5B2CA 1NMBN 3I1CA 1VCUA 4XJ9A 3H6JA 2AEPA 3HLHA 1ZI0A 5F9TA 1F8CA 4YY8A 4YZ1A 1W20A 1N7DA 2DG1A 2BF6A 4HZVA 3FW0A 2HTQA 3D11A 3E5ZA 2CMLA 2FHRA 2AH2A 2HU4A 4X6KA 2XCYA 2OJHA 1V3BA 1MZ5A 1S0JA 3H71A 1ZGKA 4FOWA 3NN9A 1INFA 3SOVA 1U6DX 4FJ6A 4XHXA 3LI5A 4C1YA 3V1SA 2GVWA 4XIKA 4GN7A 4B7QA 4K1KA 2VW0A 4DG6A 4GZQA 2SIMA 1SLLA 1C5KA 2BATA 1L7GA 4C1YB 3O9JA 4IQKA 1V04A 1KITA 4X47A 3O4PA 4XHBA 5HUMA 4D8SA 2QWDA 1N6FA 3Q6TA 1RWIA 4FPHA 1IVEA 1N6DA 2ZB5A 4IYGA 2HTYA 1H6LA 2HT5A 1WP5A 3A71A 3D12A 1A4GA 5EX7A 1USRA 1SUUA 2YA5A 4FOYA 1X2RA 3TICA 1MS3A 2GHSA 1SO7A 5GX3A 1IVDA 3S8VA 4GN9A 4JF7A 5NN9A 3SANA 4NCSA 4WA3A 3TI3A 2F26A 1CVMA 4FPJA 4YW2A 3SREA 4CPMA 5HUKA 4YW4A 3BYCA 4I00A 3G4HA 1Z4VA 1F8EA 4X4AA 4WEFA 1DILA 1CRZA 3DASA 4GDJA 4H52A 1IVFA 3LI4A 5FNTA 5FNQA 2HU0A 3GVKA 3TIAA 3A9GA 4QN3A 2V91A 4GZPA 1N1TA 1IUBA 4KS3A 2F0ZA 3K36A 2YA7A 3Q6PA 3CL2A 3NO0A 1DIMA 4UOUA 1IJQA 4G3NA 4FPGA 3IAXA 3TI5A 1V0ZA 3SALA 4D52B 4FP2A 2DSOA 4YZ4A 2F24A 4YZ2A 2VW1A 3ZGDA 2G8SA 4YW3A 2DG0A 2QWBA 4MWXA 1Z50A 4HHOA 4XJUA 1F8BA 4JMLA 4FPOB 4XYXA 1EURA 2QE8A 4FPKA 2ZZKA 4MWWA 4IMBA 4GEZA 2IVZA 3WW9A 4B7MA 3TI4A 2VK6A 3ADEA 2B8HA 4HZWA 1V0FA 4M4VA 1V0EA 1MS0A 2YA6A 5FZJA 4ASCA 4GB1A 3S8ZA 4GZSA 4MWLA 1N1SA 4GN8A 5CGJA 2FPCA 4QN7A 5HUNA 3WN7A 3FVZA 1NCBN 4M4NA 4QN4A 2BERA 4YW5A 1INHA 3BEQA 2IARA 2W5NA 1V2IA 2QWFA 4MZEA 1K32A 4XJWA 4B7RA 2HT7A 2SILA 4WA5A 5HUGA 4ZGCA 1IVBA 5D9BA 4MX0A 2DYHA 4XMAA 1S1DA 4HZYA 4GZOA 1Q7FA 2W20A 2IAUA 3SLIA 2YDTA 5GX4A 4GZTA 4B7NA 2FLUX 2XZIA 4CPNA 1B9SA 4MWJA 4Q6KA 4GZXA 2P4OA 4IFNX 4Q1UA 2VSKA 3UC1A 1B9VA 4M4UA 5GTQA 4CH9A 4FVKA 3DR2A 4MWQA 1Z4XA 1SLIA 4MWVA 2HQSA 4IN4A 1NCCN 1W0PA 3K37A 3VNHA 4MWRA 1IVGA 1NMAN 4XE9A 4FZHA 2QWHA 4MZAA 3NSSA 1NPEA 4CPOA 1MS8A 2IAXA 5H47A 1NSDA 3H73A 1Z4YA 3V65B 4K3YA 1V3EA 4XIOA 4YZ3A 1INWA 2HTRA 5GX2A 1N1VA 4XILA 1SNTA 2F10A 4MJVA 4R40A 2IAPA 2F28A 2H2NA 1F8DA 2QWEA 2Z32A 4MWYA 5EO7A 4IFJA 7NN9A 3TI6A 4PWZA 2GVVA 1E8UA 1NNCA 2YA4A 4D52A 4XJQA 3CYEA 4FPFA 4BBWA 2F29A 4XJAA 1N6EA 2QWIA 2AEQA 3HRPA 3TC9A 3V64C 3W09A 4FPEA 3K38A 2HTWA 1NSBA 1USXA 4FQ4A 4FPLA 2VSMA 1IUCA 1EUSA 2VVZA 1MS1A 1IVCA 1C9UA 3INBA 3TI8A 2F13A 5HX0A 3B69A 5FNUA 5JYYA 2VWDA 3KGGA 3T1EA 2ZW9A 4QN6A 4QN5A 5D9CA 1BJIA 2W8BB 4XMIA 4HZXA 2ZWAA 1NSCA 3A9HA 4A0PA 4MJUA 2YDPA 1E8VA 4ZLRA 4WA4A 4FP3A 4X49A 2IATA 4O5TA 4HHQA 3U0SA 3L6VA 1QBIA 1W8NA 1A14N 1CQ1A 1NNAA 2VPJA 3KYAA 3JU4A 4D4UA 3S2KA 2XN4A 4KS2A 4FPYA 4YZ5A 1W0OA 2AGSA 4GNBA 1X2JA 1E1AA 1MS4A 3OPZA 4DGRA 2RKCA 1V3DA 2QWJA 1W21A 3AMRA 3CL0A 4XOGA 4L7BA 1Z4ZA 2ZB6A 1A4QA 3H72A 1VCJA 4D52C 5D9DA 3P5BL 2HTUA 1NMCA 2VW2A 3VNGA 3SILA 2QWAA 2FP9A 1L7HA 4UF7A 2FP8A 2X9MA 4AH4A 3WDZA 3GVJA 1OFZA 5FWWA 2C4AA 1NCDN 2H2UA 1RWLA 2C4LA 2F25A 3B7EA 3CKZA 4YW1A 3SOQA 4AGTA 1MS9A 1L7FA 3ALXA 1MR5A 3Q6KA 2F12A 1INYA 4MC7A 4CPLA 4FOQA 4GNCA 4NC5A 4KS1A 1INGA 3II7A 5FZNA 3ALWA 3AMSA 4CPZA 4CSDA 4XJZA 2WOZA 4MWUA 5FNRA 2VK7A 3SRGA 2QWCA 1MS5A 5F72C 5B2DA 2XZJA 3WWAA 5FNSA 1WCQA 4XJ8A 2QWGA 1E8TA 4IFLX 1NNBA 5EO8A 4L7DA 3O9KA 2IAVA 1EUUA 3ZGCA 1NCAN 3HLIA 1S0IA 4M3MA 1W1XA 3PJQA 4J9TA 4NN9A 1XOEA 1POOA 1WCSA 4GJTA 4SLIA 1MWEA 4FPCA 1NN2A 4L7CA 2XZKA 2F27A 2FPBA 1EUTA 4AGIA 5M1ZA 4CHBA 1N1YA 3GVLA 4XJRA
chains in the Genus database with same CATH topology
4D4UA 4C1YB 1OFZA 5EO7A 4AHAA 4D52B 4AGIA 1IUCA 4CSDA 5H47A 1IUBA 4C1YA 4D52C 4UOUA 4AGTA 4AH4A 4D52A 5EO8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4D4U A;  4C1Y B;  1OFZ A;  5EO7 A;  4AHA A;  4D52 B;  4AGI A;  1IUC A;  4CSD A;  5H47 A;  1IUB A;  4C1Y A;  4D52 C;  4UOU A;  4AGT A;  4AH4 A;  4D52 A;  5EO8 A; 
#chains in the Genus database with same CATH topology
 2JKB A;  2W8B A;  1PJX A;  3K39 A;  4WEG A;  4HIZ A;  1QLG A;  3S94 A;  4CPY A;  4HZZ A;  2IAS A;  2BZD A;  3G4E A;  4KS4 A;  4GZW A;  2F11 A;  2W5O A;  4ZY3 A;  2IAW A;  3SOB B;  3K3A A;  4XMB A;  4H53 A;  4K1J A;  4QNP A;  4HW6 A;  2VAQ A;  2A75 A;  1MZ6 A;  1XOG A;  5GX1 A;  4GDI A;  4N1B A;  4GNA A;  6NN9 A;  1S18 A;  1Z4W A;  1W8O A;  2YA8 A;  2POO A;  2GVU A;  2W38 A;  2IAO A;  4KS5 A;  4K1I A;  4K1H A;  2ISM A;  5GX5 A;  2HT8 A;  1INX A;  3A72 A;  4FOV A;  4AHA A;  1CRU A;  2HTV A;  2IAQ A;  3LI3 A;  2VK5 A;  2QWK A;  1B9T A;  2GVX A;  1V3C A;  4O5S A;  3TIB A;  1INV A;  4B7J A;  2SLI A;  5B2C A;  1NMB N;  3I1C A;  1VCU A;  4XJ9 A;  3H6J A;  2AEP A;  3HLH A;  1ZI0 A;  5F9T A;  1F8C A;  4YY8 A;  4YZ1 A;  1W20 A;  1N7D A;  2DG1 A;  2BF6 A;  4HZV A;  3FW0 A;  2HTQ A;  3D11 A;  3E5Z A;  2CML A;  2FHR A;  2AH2 A;  2HU4 A;  4X6K A;  2XCY A;  2OJH A;  1V3B A;  1MZ5 A;  1S0J A;  3H71 A;  1ZGK A;  4FOW A;  3NN9 A;  1INF A;  3SOV A;  1U6D X;  4FJ6 A;  4XHX A;  3LI5 A;  4C1Y A;  3V1S A;  2GVW A;  4XIK A;  4GN7 A;  4B7Q A;  4K1K A;  2VW0 A;  4DG6 A;  4GZQ A;  2SIM A;  1SLL A;  1C5K A;  2BAT A;  1L7G A;  4C1Y B;  3O9J A;  4IQK A;  1V04 A;  1KIT A;  4X47 A;  3O4P A;  4XHB A;  5HUM A;  4D8S A;  2QWD A;  1N6F A;  3Q6T A;  1RWI A;  4FPH A;  1IVE A;  1N6D A;  2ZB5 A;  4IYG A;  2HTY A;  1H6L A;  2HT5 A;  1WP5 A;  3A71 A;  3D12 A;  1A4G A;  5EX7 A;  1USR A;  1SUU A;  2YA5 A;  4FOY A;  1X2R A;  3TIC A;  1MS3 A;  2GHS A;  1SO7 A;  5GX3 A;  1IVD A;  3S8V A;  4GN9 A;  4JF7 A;  5NN9 A;  3SAN A;  4NCS A;  4WA3 A;  3TI3 A;  2F26 A;  1CVM A;  4FPJ A;  4YW2 A;  3SRE A;  4CPM A;  5HUK A;  4YW4 A;  3BYC A;  4I00 A;  3G4H A;  1Z4V A;  1F8E A;  4X4A A;  4WEF A;  1DIL A;  1CRZ A;  3DAS A;  4GDJ A;  4H52 A;  1IVF A;  3LI4 A;  5FNT A;  5FNQ A;  2HU0 A;  3GVK A;  3TIA A;  3A9G A;  4QN3 A;  2V91 A;  4GZP A;  1N1T A;  1IUB A;  4KS3 A;  2F0Z A;  3K36 A;  2YA7 A;  3Q6P A;  3CL2 A;  3NO0 A;  1DIM A;  4UOU A;  1IJQ A;  4G3N A;  4FPG A;  3IAX A;  3TI5 A;  1V0Z A;  3SAL A;  4D52 B;  4FP2 A;  2DSO A;  4YZ4 A;  2F24 A;  4YZ2 A;  2VW1 A;  3ZGD A;  2G8S A;  4YW3 A;  2DG0 A;  2QWB A;  4MWX A;  1Z50 A;  4HHO A;  4XJU A;  1F8B A;  4JML A;  4FPO B;  4XYX A;  1EUR A;  2QE8 A;  4FPK A;  2ZZK A;  4MWW A;  4IMB A;  4GEZ A;  2IVZ A;  3WW9 A;  4B7M A;  3TI4 A;  2VK6 A;  3ADE A;  2B8H A;  4HZW A;  1V0F A;  4M4V A;  1V0E A;  1MS0 A;  2YA6 A;  5FZJ A;  4ASC A;  4GB1 A;  3S8Z A;  4GZS A;  4MWL A;  1N1S A;  4GN8 A;  5CGJ A;  2FPC A;  4QN7 A;  5HUN A;  3WN7 A;  3FVZ A;  1NCB N;  4M4N A;  4QN4 A;  2BER A;  4YW5 A;  1INH A;  3BEQ A;  2IAR A;  2W5N A;  1V2I A;  2QWF A;  4MZE A;  1K32 A;  4XJW A;  4B7R A;  2HT7 A;  2SIL A;  4WA5 A;  5HUG A;  4ZGC A;  1IVB A;  5D9B A;  4MX0 A;  2DYH A;  4XMA A;  1S1D A;  4HZY A;  4GZO A;  1Q7F A;  2W20 A;  2IAU A;  3SLI A;  2YDT A;  5GX4 A;  4GZT A;  4B7N A;  2FLU X;  2XZI A;  4CPN A;  1B9S A;  4MWJ A;  4Q6K A;  4GZX A;  2P4O A;  4IFN X;  4Q1U A;  2VSK A;  3UC1 A;  1B9V A;  4M4U A;  5GTQ A;  4CH9 A;  4FVK A;  3DR2 A;  4MWQ A;  1Z4X A;  1SLI A;  4MWV A;  2HQS A;  4IN4 A;  1NCC N;  1W0P A;  3K37 A;  3VNH A;  4MWR A;  1IVG A;  1NMA N;  4XE9 A;  4FZH A;  2QWH A;  4MZA A;  3NSS A;  1NPE A;  4CPO A;  1MS8 A;  2IAX A;  5H47 A;  1NSD A;  3H73 A;  1Z4Y A;  3V65 B;  4K3Y A;  1V3E A;  4XIO A;  4YZ3 A;  1INW A;  2HTR A;  5GX2 A;  1N1V A;  4XIL A;  1SNT A;  2F10 A;  4MJV A;  4R40 A;  2IAP A;  2F28 A;  2H2N A;  1F8D A;  2QWE A;  2Z32 A;  4MWY A;  5EO7 A;  4IFJ A;  7NN9 A;  3TI6 A;  4PWZ A;  2GVV A;  1E8U A;  1NNC A;  2YA4 A;  4D52 A;  4XJQ A;  3CYE A;  4FPF A;  4BBW A;  2F29 A;  4XJA A;  1N6E A;  2QWI A;  2AEQ A;  3HRP A;  3TC9 A;  3V64 C;  3W09 A;  4FPE A;  3K38 A;  2HTW A;  1NSB A;  1USX A;  4FQ4 A;  4FPL A;  2VSM A;  1IUC A;  1EUS A;  2VVZ A;  1MS1 A;  1IVC A;  1C9U A;  3INB A;  3TI8 A;  2F13 A;  5HX0 A;  3B69 A;  5FNU A;  5JYY A;  2VWD A;  3KGG A;  3T1E A;  2ZW9 A;  4QN6 A;  4QN5 A;  5D9C A;  1BJI A;  2W8B B;  4XMI A;  4HZX A;  2ZWA A;  1NSC A;  3A9H A;  4A0P A;  4MJU A;  2YDP A;  1E8V A;  4ZLR A;  4WA4 A;  4FP3 A;  4X49 A;  2IAT A;  4O5T A;  4HHQ A;  3U0S A;  3L6V A;  1QBI A;  1W8N A;  1A14 N;  1CQ1 A;  1NNA A;  2VPJ A;  3KYA A;  3JU4 A;  4D4U A;  3S2K A;  2XN4 A;  4KS2 A;  4FPY A;  4YZ5 A;  1W0O A;  2AGS A;  4GNB A;  1X2J A;  1E1A A;  1MS4 A;  3OPZ A;  4DGR A;  2RKC A;  1V3D A;  2QWJ A;  1W21 A;  3AMR A;  3CL0 A;  4XOG A;  4L7B A;  1Z4Z A;  2ZB6 A;  1A4Q A;  3H72 A;  1VCJ A;  4D52 C;  5D9D A;  3P5B L;  2HTU A;  1NMC A;  2VW2 A;  3VNG A;  3SIL A;  2QWA A;  2FP9 A;  1L7H A;  4UF7 A;  2FP8 A;  2X9M A;  4AH4 A;  3WDZ A;  3GVJ A;  1OFZ A;  5FWW A;  2C4A A;  1NCD N;  2H2U A;  1RWL A;  2C4L A;  2F25 A;  3B7E A;  3CKZ A;  4YW1 A;  3SOQ A;  4AGT A;  1MS9 A;  1L7F A;  3ALX A;  1MR5 A;  3Q6K A;  2F12 A;  1INY A;  4MC7 A;  4CPL A;  4FOQ A;  4GNC A;  4NC5 A;  4KS1 A;  1ING A;  3II7 A;  5FZN A;  3ALW A;  3AMS A;  4CPZ A;  4CSD A;  4XJZ A;  2WOZ A;  4MWU A;  5FNR A;  2VK7 A;  3SRG A;  2QWC A;  1MS5 A;  5F72 C;  5B2D A;  2XZJ A;  3WWA A;  5FNS A;  1WCQ A;  4XJ8 A;  2QWG A;  1E8T A;  4IFL X;  1NNB A;  5EO8 A;  4L7D A;  3O9K A;  2IAV A;  1EUU A;  3ZGC A;  1NCA N;  3HLI A;  1S0I A;  4M3M A;  1W1X A;  3PJQ A;  4J9T A;  4NN9 A;  1XOE A;  1POO A;  1WCS A;  4GJT A;  4SLI A;  1MWE A;  4FPC A;  1NN2 A;  4L7C A;  2XZK A;  2F27 A;  2FPB A;  1EUT A;  4AGI A;  5M1Z A;  4CHB A;  1N1Y A;  3GVL A;  4XJR A; 
#chains in the Genus database with same CATH homology
 4D4U A;  4C1Y B;  1OFZ A;  5EO7 A;  4AHA A;  4D52 B;  4AGI A;  1IUC A;  4CSD A;  5H47 A;  1IUB A;  4C1Y A;  4D52 C;  4UOU A;  4AGT A;  4AH4 A;  4D52 A;  5EO8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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