1R2J | Genus

Total Genus 127

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	127
sequence length	363
structure length	353
Chain Sequence	ERDALLTDLVGDRAAEWDTSGELPRDLLVRLGADGLLCAEVAAEHGGLGLGSRENGEFTAHVGSLCSSLRSVMTSQGMAAWTVQRLGDAGQRATFLKELTSGLAAVGFSERQAGSDLSAMRTRVRLDGDTAVVDGHKVWTTAAAYADHLVVFGLQEDGSGAVVVVPADTPGVRVERVPKPSGCRAAGHADLHLDQVRVPAGAVLAGSGASLPMLVAASLAYGRKSVAWGCVGILRACRTAAVAHARTREQFGRPLGDHQLVAGHIADLWTAEQIAARVCEYASDHMVPATILAKHVAAERAAAGAATAAQVLASAGAGHVVERAYRDAKLMEIIEGSSEMCRVMLAQHALALP

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Oxidoreductase
source organism	Streptomyces hygroscopicus
publication title	Crystal Structure of an Acyl-ACP Dehydrogenase from the FK520 Polyketide Biosynthetic Pathway: Insights into Extender Unit Biosynthesis pubmed doi rcsb
molecule keywords	protein FkbI
total genus	127
structure length	353
sequence length	363
ec nomenclature
pdb deposition date	2003-09-28

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00441	Acyl-CoA_dh_1	Acyl-CoA dehydrogenase, C-terminal domain
A	PF02770	Acyl-CoA_dh_M	Acyl-CoA dehydrogenase, middle domain
A	PF02771	Acyl-CoA_dh_N	Acyl-CoA dehydrogenase, N-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.540.10	Mainly Alpha	Orthogonal Bundle	Butyryl-Coa Dehydrogenase, subunit A; domain 1	Acyl-CoA dehydrogenase/oxidase, N-terminal domain	1r2jA01
1.20.140.10	Mainly Alpha	Up-down Bundle	Butyryl-CoA Dehydrogenase, subunit A; domain 3	Butyryl-CoA Dehydrogenase, subunit A, domain 3	1r2jA03
2.40.110.10	Mainly Beta	Beta Barrel	Butyryl-CoA Dehydrogenase, subunit A; domain 2	Butyryl-CoA Dehydrogenase, subunit A, domain 2	1r2jA02

3BNJA 1GU6A 1UKWA 3D9DA 3MPJA 3MDDA 5K3JA 3PFDA 2IX5A 2R0MA 1EGCA 4P13A 4ZYJA 5K3HA 4ZXVA 1RX0A 3BNGA 3LGQA 2RDZA 1FS9A 3HWCA 4X28C 3OWMA 2OT4A 2JBRA 2JIFA 3D6BA 3GNCA 3FCJA 3R7KA 2FONA 4L3XA 1W07A 2A1TA 3SWOA 2DVLA 1QDBA 3NF4A 3RKHA 3FO3A 1R2JA 2YYMA 4U83A 3II9A 1OAHA 2C12A 3M9VA 2RFQA 4W9UA 2J7AA 4JEKA 4M9AA 4IRNA 1IVHA 2PG0A 2D29A 3SF6A 3GM6A 4OO2A 3AFFA 1U8VA 2Z1QA 3B96A 4L3ZA 1JQIA 4N5FA 4O5MA 2E80A 3D9FA 3BNFA 2YYGA 4NXLA 3X0XA 3L1TA 1UDYA 2ZAFA 1EGEA 4XVXA 2YYKA 4L38A 3D9GA 3BNHA 2R0NA 2ZO5A 4G5EA 3UU9A 2EBAA 4Q0TA 2RF7A 5K3IA 3SCEA 2REHA 1SIQA 4Q4UA 2VR0A 3TORA 2JBTA 3D9EA 2VIGA 1FS7A 3AFEA 4IV6A 4DOYA 4L3YA 4WJYA 4Q17A 2C0UA 4RM7A 1SIRA 3GQTA 4L1FA 1FS8A 3S7WA 2OR0A 4KCFA 3F29A 2UXWA 1IS2A 3EONA 1EGDA 3D1IA 3LG1A 4Q5CA 4Q5BA 4HR3A 1T9GA 4X28A 3TTBA 3MDEA 2CX9A 3EOMA 4Q1OA 3P4TA 5K3GA 2YYJA 2DDHA 3OIBA 3MXLA 3MMOA 2WBIA 3UBRA 2IX6A 2YYIA 3X0YA 3MPIA 2JBSA 1BUCA 3SXQA 2YYLA 2E81A 4KTOA 3MKHA 3OWAA 1WS9A
chains in the Genus database with same CATH superfamily

3BNJA 1XFXA 4V25A 2Q8GA 1GU6A 1X90A 1UKWA 3D9DA 3MPJA 1SC5A 3MDDA 4AKGA 5K3JA 3PFDA 2IX5A 2R0MA 1EGCA 4P13A 4ZYJA 5K3HA 4ZXVA 1RX0A 1RP3A 2FP1A 3BNGA 3LGQA 2RDZA 1FS9A 3HWCA 4X28C 1XG2B 3OWMA 2OT4A 2JBRA 2JIFA 4JIOA 3D6BA 3GNCA 3FCJA 3R7KA 2FONA 4L3XA 1W07A 2A1TA 3SWOA 2DVLA 2CJ8A 2Q8HA 2BU2A 5BRKA 3CE2A 1QDBA 3NF4A 2ZDYA 3RKHA 3C3LA 3FO3A 1R2JA 2AO2A 5B5VA 2CJ7A 4E00A 2R02A 2YYMA 4U83A 3II9A 1S26A 2BU7A 1OAHA 1XFYA 2C12A 5J71A 3M9VA 1XFWA 1JM6A 2OEVA 2RFQA 4W9UA 1XFVA 4JEKA 2J7AA 2XS1A 3CRLA 4M9AA 4E02A 3DJLA 4IRNA 1RJ1A 5M4NA 1IVHA 2PG0A 2D29A 3SF6A 1RJ4A 2BU6A 3GM6A 3TZ5A 4OO2A 2GBBA 3AFFA 1U8VA 1Y8OA 2Z1QA 1PK0A 3B96A 2HJNA 1JQIA 4N5FA 4O5MA 2E80A 2ZDXA 3N0RA 4L3ZA 2PNRA 4FF3A 4F0XA 1XFZA 1XFUA 2F6LA 4H7QA 3D9FA 4MPEA 3BNFA 2YYGA 4NXLA 3X0XA 4V26A 3L1TA 1UDYA 2ZAFA 1EGEA 4XVXA 2FP2A 2YYKA 3D9GA 4J1VA 4L38A 4HKSA 1Y8NA 3BNHA 4KSAA 4MP7A 4AKIA 2R0NA 2ZO5A 2CJ4A 4G5EA 2E0AA 3UU9A 2EBAA 3X29A 2CJ5A 3Q0AA 4Q0TA 1GKZA 5K3IA 2RF7A 3CRKA 3SCEA 2REHA 1Y8PA 2EBFX 4QICA 1SIQA 3VKHA 3KMLA 4Q4UA 3Q23A 4FF1A 1R3BA 2R05A 2VR0A 3TORA 4LQQB 2JBTA 3D9EA 2VIGA 1FS7A 3AFEA 3D2RA 4AI6A 4IV6A 3C46A 4DOYA 2BU5A 4L3YA 2AZEA 4WJYA 4P79A 4Q17A 1LVCA 4DZYA 5B5WA 2C0UA 5B6BA 4RM7A 1SIRA 3VADA 4MP2A 3C2PA 3U33A 3GQTA 4L1FA 1FS8A 3S7WA 2OR0A 2EC5A 4H81A 3Q24A 4KCFA 3F29A 1GKXA 2OJQA 2UXWA 5EZ3A 4JIZA 5GJVE 5BRMA 2XQRB 1IS2A 3EONA 2Q8FA 1EGDA 1K8TA 3D1IA 3LG1A 4FZ4A 4Q5CA 4Q5BA 4HR3A 4FF4A 1T9GA 4X28A 2VF1A 4G97A 2YGWA 3MDEA 3TTBA 2CX9A 1K93A 3EOMA 2BU8A 2Q8IA 2PO4A 4Q1OA 4KSFA 3TZ0A 3P4TA 5K3GA 2YYJA 2DDHA 5J6AA 2CJ6A 1K90A 5M4KA 5M4PA 3OIBA 3VKGA 4LQSB 5M4MA 3MXLA 3MMOA 2WBIA 3UBRA 4AKHA 2IX6A 1SK6A 3TZ4A 1GJVA 2R03A 2YYIA 4MPCA 3X0YA 1Y0VA 3MPIA 2JBSA 1BUCA 2LFWA 2XS8A 5GJWE 2ZKJA 4KS9A 3SXQA 3TZ2A 4E01A 3Q22A 2OEXA 2YYLA 1X8ZA 2E81A 4H85A 2EBHX 4HKRA 4FF2A 1X91A 4KTOA 3MKHA 3OWAA 1WS9A 1PI1A 2BTZA 4MPNA 2QR4A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3BNJ A;  1GU6 A;  1UKW A;  3D9D A;  3MPJ A;  3MDD A;  5K3J A;  3PFD A;  2IX5 A;  2R0M A;  1EGC A;  4P13 A;  4ZYJ A;  5K3H A;  4ZXV A;  1RX0 A;  3BNG A;  3LGQ A;  2RDZ A;  1FS9 A;  3HWC A;  4X28 C;  3OWM A;  2OT4 A;  2JBR A;  2JIF A;  3D6B A;  3GNC A;  3FCJ A;  3R7K A;  2FON A;  4L3X A;  1W07 A;  2A1T A;  3SWO A;  2DVL A;  1QDB A;  3NF4 A;  3RKH A;  3FO3 A;  1R2J A;  2YYM A;  4U83 A;  3II9 A;  1OAH A;  2C12 A;  3M9V A;  2RFQ A;  4W9U A;  2J7A A;  4JEK A;  4M9A A;  4IRN A;  1IVH A;  2PG0 A;  2D29 A;  3SF6 A;  3GM6 A;  4OO2 A;  3AFF A;  1U8V A;  2Z1Q A;  3B96 A;  4L3Z A;  1JQI A;  4N5F A;  4O5M A;  2E80 A;  3D9F A;  3BNF A;  2YYG A;  4NXL A;  3X0X A;  3L1T A;  1UDY A;  2ZAF A;  1EGE A;  4XVX A;  2YYK A;  4L38 A;  3D9G A;  3BNH A;  2R0N A;  2ZO5 A;  4G5E A;  3UU9 A;  2EBA A;  4Q0T A;  2RF7 A;  5K3I A;  3SCE A;  2REH A;  1SIQ A;  4Q4U A;  2VR0 A;  3TOR A;  2JBT A;  3D9E A;  2VIG A;  1FS7 A;  3AFE A;  4IV6 A;  4DOY A;  4L3Y A;  4WJY A;  4Q17 A;  2C0U A;  4RM7 A;  1SIR A;  3GQT A;  4L1F A;  1FS8 A;  3S7W A;  2OR0 A;  4KCF A;  3F29 A;  2UXW A;  1IS2 A;  3EON A;  1EGD A;  3D1I A;  3LG1 A;  4Q5C A;  4Q5B A;  4HR3 A;  1T9G A;  4X28 A;  3TTB A;  3MDE A;  2CX9 A;  3EOM A;  4Q1O A;  3P4T A;  5K3G A;  2YYJ A;  2DDH A;  3OIB A;  3MXL A;  3MMO A;  2WBI A;  3UBR A;  2IX6 A;  2YYI A;  3X0Y A;  3MPI A;  2JBS A;  1BUC A;  3SXQ A;  2YYL A;  2E81 A;  4KTO A;  3MKH A;  3OWA A;  1WS9 A; 
#chains in the Genus database with same CATH topology
 3BNJ A;  1XFX A;  4V25 A;  2Q8G A;  1GU6 A;  1X90 A;  1UKW A;  3D9D A;  3MPJ A;  1SC5 A;  3MDD A;  4AKG A;  5K3J A;  3PFD A;  2IX5 A;  2R0M A;  1EGC A;  4P13 A;  4ZYJ A;  5K3H A;  4ZXV A;  1RX0 A;  1RP3 A;  2FP1 A;  3BNG A;  3LGQ A;  2RDZ A;  1FS9 A;  3HWC A;  4X28 C;  1XG2 B;  3OWM A;  2OT4 A;  2JBR A;  2JIF A;  4JIO A;  3D6B A;  3GNC A;  3FCJ A;  3R7K A;  2FON A;  4L3X A;  1W07 A;  2A1T A;  3SWO A;  2DVL A;  2CJ8 A;  2Q8H A;  2BU2 A;  5BRK A;  3CE2 A;  1QDB A;  3NF4 A;  2ZDY A;  3RKH A;  3C3L A;  3FO3 A;  1R2J A;  2AO2 A;  5B5V A;  2CJ7 A;  4E00 A;  2R02 A;  2YYM A;  4U83 A;  3II9 A;  1S26 A;  2BU7 A;  1OAH A;  1XFY A;  2C12 A;  5J71 A;  3M9V A;  1XFW A;  1JM6 A;  2OEV A;  2RFQ A;  4W9U A;  1XFV A;  4JEK A;  2J7A A;  2XS1 A;  3CRL A;  4M9A A;  4E02 A;  3DJL A;  4IRN A;  1RJ1 A;  5M4N A;  1IVH A;  2PG0 A;  2D29 A;  3SF6 A;  1RJ4 A;  2BU6 A;  3GM6 A;  3TZ5 A;  4OO2 A;  2GBB A;  3AFF A;  1U8V A;  1Y8O A;  2Z1Q A;  1PK0 A;  3B96 A;  2HJN A;  1JQI A;  4N5F A;  4O5M A;  2E80 A;  2ZDX A;  3N0R A;  4L3Z A;  2PNR A;  4FF3 A;  4F0X A;  1XFZ A;  1XFU A;  2F6L A;  4H7Q A;  3D9F A;  4MPE A;  3BNF A;  2YYG A;  4NXL A;  3X0X A;  4V26 A;  3L1T A;  1UDY A;  2ZAF A;  1EGE A;  4XVX A;  2FP2 A;  2YYK A;  3D9G A;  4J1V A;  4L38 A;  4HKS A;  1Y8N A;  3BNH A;  4KSA A;  4MP7 A;  4AKI A;  2R0N A;  2ZO5 A;  2CJ4 A;  4G5E A;  2E0A A;  3UU9 A;  2EBA A;  3X29 A;  2CJ5 A;  3Q0A A;  4Q0T A;  1GKZ A;  5K3I A;  2RF7 A;  3CRK A;  3SCE A;  2REH A;  1Y8P A;  2EBF X;  4QIC A;  1SIQ A;  3VKH A;  3KML A;  4Q4U A;  3Q23 A;  4FF1 A;  1R3B A;  2R05 A;  2VR0 A;  3TOR A;  4LQQ B;  2JBT A;  3D9E A;  2VIG A;  1FS7 A;  3AFE A;  3D2R A;  4AI6 A;  4IV6 A;  3C46 A;  4DOY A;  2BU5 A;  4L3Y A;  2AZE A;  4WJY A;  4P79 A;  4Q17 A;  1LVC A;  4DZY A;  5B5W A;  2C0U A;  5B6B A;  4RM7 A;  1SIR A;  3VAD A;  4MP2 A;  3C2P A;  3U33 A;  3GQT A;  4L1F A;  1FS8 A;  3S7W A;  2OR0 A;  2EC5 A;  4H81 A;  3Q24 A;  4KCF A;  3F29 A;  1GKX A;  2OJQ A;  2UXW A;  5EZ3 A;  4JIZ A;  5GJV E;  5BRM A;  2XQR B;  1IS2 A;  3EON A;  2Q8F A;  1EGD A;  1K8T A;  3D1I A;  3LG1 A;  4FZ4 A;  4Q5C A;  4Q5B A;  4HR3 A;  4FF4 A;  1T9G A;  4X28 A;  2VF1 A;  4G97 A;  2YGW A;  3MDE A;  3TTB A;  2CX9 A;  1K93 A;  3EOM A;  2BU8 A;  2Q8I A;  2PO4 A;  4Q1O A;  4KSF A;  3TZ0 A;  3P4T A;  5K3G A;  2YYJ A;  2DDH A;  5J6A A;  2CJ6 A;  1K90 A;  5M4K A;  5M4P A;  3OIB A;  3VKG A;  4LQS B;  5M4M A;  3MXL A;  3MMO A;  2WBI A;  3UBR A;  4AKH A;  2IX6 A;  1SK6 A;  3TZ4 A;  1GJV A;  2R03 A;  2YYI A;  4MPC A;  3X0Y A;  1Y0V A;  3MPI A;  2JBS A;  1BUC A;  2LFW A;  2XS8 A;  5GJW E;  2ZKJ A;  4KS9 A;  3SXQ A;  3TZ2 A;  4E01 A;  3Q22 A;  2OEX A;  2YYL A;  1X8Z A;  2E81 A;  4H85 A;  2EBH X;  4HKR A;  4FF2 A;  1X91 A;  4KTO A;  3MKH A;  3OWA A;  1WS9 A;  1PI1 A;  2BTZ A;  4MPN A;  2QR4 A; 
#chains in the Genus database with same CATH homology
 3BNJ A;  1GU6 A;  1UKW A;  3D9D A;  3MPJ A;  3MDD A;  5K3J A;  3PFD A;  2IX5 A;  2R0M A;  1EGC A;  4P13 A;  4ZYJ A;  5K3H A;  4ZXV A;  1RX0 A;  3BNG A;  3LGQ A;  2RDZ A;  1FS9 A;  3HWC A;  4X28 C;  3OWM A;  2OT4 A;  2JBR A;  2JIF A;  3D6B A;  3GNC A;  3FCJ A;  3R7K A;  2FON A;  4L3X A;  1W07 A;  2A1T A;  3SWO A;  2DVL A;  1QDB A;  3NF4 A;  3RKH A;  3FO3 A;  1R2J A;  2YYM A;  4U83 A;  3II9 A;  1OAH A;  2C12 A;  3M9V A;  2RFQ A;  4W9U A;  2J7A A;  4JEK A;  4M9A A;  4IRN A;  1IVH A;  2PG0 A;  2D29 A;  3SF6 A;  3GM6 A;  4OO2 A;  3AFF A;  1U8V A;  2Z1Q A;  3B96 A;  4L3Z A;  1JQI A;  4N5F A;  4O5M A;  2E80 A;  3D9F A;  3BNF A;  2YYG A;  4NXL A;  3X0X A;  3L1T A;  1UDY A;  2ZAF A;  1EGE A;  4XVX A;  2YYK A;  4L38 A;  3D9G A;  3BNH A;  2R0N A;  2ZO5 A;  4G5E A;  3UU9 A;  2EBA A;  4Q0T A;  2RF7 A;  5K3I A;  3SCE A;  2REH A;  1SIQ A;  4Q4U A;  2VR0 A;  3TOR A;  2JBT A;  3D9E A;  2VIG A;  1FS7 A;  3AFE A;  4IV6 A;  4DOY A;  4L3Y A;  4WJY A;  4Q17 A;  2C0U A;  4RM7 A;  1SIR A;  3GQT A;  4L1F A;  1FS8 A;  3S7W A;  2OR0 A;  4KCF A;  3F29 A;  2UXW A;  1IS2 A;  3EON A;  1EGD A;  3D1I A;  3LG1 A;  4Q5C A;  4Q5B A;  4HR3 A;  1T9G A;  4X28 A;  3TTB A;  3MDE A;  2CX9 A;  3EOM A;  4Q1O A;  3P4T A;  5K3G A;  2YYJ A;  2DDH A;  3OIB A;  3MXL A;  3MMO A;  2WBI A;  3UBR A;  2IX6 A;  2YYI A;  3X0Y A;  3MPI A;  2JBS A;  1BUC A;  3SXQ A;  2YYL A;  2E81 A;  4KTO A;  3MKH A;  3OWA A;  1WS9 A;

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similar chains in the Genus database (?% sequence similarity)

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1R2JA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations