The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
139
|
sequence length |
385
|
structure length |
385
|
Chain Sequence |
GFSFELTEQQKEFQATARKFAREEIIPVAAEYDRTGEYPVPLLKRAWELGLMNTHIPESFGGLGLGIIDSCLITEELAYGCTGVQTAIEANTLGQVPLIIGGNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPASKAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTGEGAGFKIAMGTFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLLAEHQGISFLLADMAMKVELARLSYQRAAWEIDSGRRNTYYASIAKAYAADIANQLATDAVQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTAQIQRIIIAREHIGRYK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure of the transition state analog of medium-chain acyl-CoA dehydrogenase. Crystallographic and molecular orbital studies on the charge-transfer complex of medium-chain acyl-CoA dehydrogenase with 3-thiaoctanoyl-CoA
pubmed doi rcsb |
| molecule tags |
Oxidoreductase
|
| molecule keywords |
Acyl-CoA dehydrogenase, medium-chain specific
|
| total genus |
139
|
| structure length |
385
|
| sequence length |
385
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature |
ec
1.3.8.7: Medium-chain acyl-CoA dehydrogenase. |
| pdb deposition date | 2003-05-07 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00441 | Acyl-CoA_dh_1 | Acyl-CoA dehydrogenase, C-terminal domain |
| A | PF02770 | Acyl-CoA_dh_M | Acyl-CoA dehydrogenase, middle domain |
| A | PF02771 | Acyl-CoA_dh_N | Acyl-CoA dehydrogenase, N-terminal domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Butyryl-Coa Dehydrogenase, subunit A; domain 1 | Acyl-CoA dehydrogenase/oxidase, N-terminal domain | ||
| Mainly Alpha | Up-down Bundle | Butyryl-CoA Dehydrogenase, subunit A; domain 3 | Butyryl-CoA Dehydrogenase, subunit A, domain 3 | ||
| Mainly Beta | Beta Barrel | Butyryl-CoA Dehydrogenase, subunit A; domain 2 | Butyryl-CoA Dehydrogenase, subunit A, domain 2 |
#chains in the Genus database with same CATH superfamily 1R2J A; 4NXL A; 3OWM A; 3GM6 A; 2JBS A; 4N5F A; 3LG1 A; 2RF7 A; 1BUC A; 2ZAF A; 4L3Z A; 2REH A; 4IRN A; 2OR0 A; 4U83 A; 3SWO A; 2YYM A; 2YYK A; 3PFD A; 3F29 A; 1UKW A; 3LGQ A; 2A1T A; 3BNF A; 3MMO A; 3TTB A; 3X0Y A; 4IV6 A; 4M9A A; 2JIF A; 5K3I A; 3AFE A; 3D9F A; 1FS8 A; 2VR0 A; 5K3G A; 4ZYJ A; 2J7A A; 2UXW A; 1W07 A; 4RM7 A; 4L38 A; 4L3X A; 2JBT A; 1FS9 A; 3RKH A; 3EOM A; 3SF6 A; 2DDH A; 4G5E A; 3MXL A; 2YYI A; 3NF4 A; 1IVH A; 1EGE A; 3P4T A; 3OWA A; 3SCE A; 3UBR A; 4DOY A; 2CX9 A; 2D29 A; 4X28 A; 1OAH A; 4L1F A; 2RDZ A; 4Q17 A; 3D6B A; 2VIG A; 3FO3 A; 2Z1Q A; 3D1I A; 5K3H A; 3BNH A; 3HWC A; 3D9E A; 1SIR A; 2C0U A; 3S7W A; 4ZXV A; 3GQT A; 3MDD A; 1IS2 A; 3BNG A; 3L1T A; 2R0N A; 4XVX A; 3BNJ A; 3M9V A; 1JQI A; 4W9U A; 4JEK A; 2E81 A; 2JBR A; 3MDE A; 2YYG A; 4X28 C; 4Q0T A; 3SXQ A; 3GNC A; 3OIB A; 1GU6 A; 5K3J A; 4Q5C A; 3R7K A; 4O5M A; 1RX0 A; 4Q1O A; 3TOR A; 4Q4U A; 3EON A; 3II9 A; 2RFQ A; 4HR3 A; 3AFF A; 4L3Y A; 3UU9 A; 2FON A; 3MPJ A; 4Q5B A; 3X0X A; 2E80 A; 1UDY A; 1EGC A; 2EBA A; 2C12 A; 4OO2 A; 1EGD A; 2DVL A; 4P13 A; 3D9D A; 1FS7 A; 1U8V A; 1WS9 A; 2YYJ A; 3FCJ A; 2IX5 A; 2IX6 A; 4KTO A; 1T9G A; 3MKH A; 2WBI A; 1QDB A; 2OT4 A; 2PG0 A; 2R0M A; 2ZO5 A; 3B96 A; 3MPI A; 4WJY A; 2YYL A; 3D9G A; 1SIQ A; 4KCF A; #chains in the Genus database with same CATH topology 1R2J A; 4NXL A; 1RP3 A; 3OWM A; 3GM6 A; 4V26 A; 2Q8G A; 2JBS A; 4N5F A; 3LG1 A; 4H7Q A; 2RF7 A; 1BUC A; 2ZAF A; 4L3Z A; 2REH A; 1X91 A; 4IRN A; 2QR4 A; 2OR0 A; 2ZDX A; 4U83 A; 3SWO A; 1K93 A; 1Y8O A; 4LQQ B; 2YYM A; 2YYK A; 2EBF X; 4MPN A; 3PFD A; 3F29 A; 1UKW A; 3X29 A; 1SC5 A; 4H81 A; 3LGQ A; 2A1T A; 4JIO A; 2CJ6 A; 3BNF A; 3CRK A; 3MMO A; 2FP1 A; 2HJN A; 2YGW A; 3TTB A; 4E02 A; 3X0Y A; 5B6B A; 4FF3 A; 2BU2 A; 1RJ4 A; 1GKX A; 4IV6 A; 4M9A A; 2JIF A; 5K3I A; 4QIC A; 2CJ4 A; 3D2R A; 3AFE A; 3D9F A; 4MP2 A; 4AI6 A; 1FS8 A; 2VR0 A; 5K3G A; 4ZYJ A; 1K90 A; 2J7A A; 2UXW A; 1W07 A; 4RM7 A; 1JM6 A; 2PO4 A; 4L38 A; 2JBT A; 1FS9 A; 4L3X A; 2Q8H A; 2CJ7 A; 3RKH A; 5M4M A; 3EOM A; 5J71 A; 4H85 A; 1GKZ A; 3SF6 A; 2DDH A; 1XFY A; 5EZ3 A; 1Y8P A; 4G5E A; 3MXL A; 4FF4 A; 3DJL A; 2YYI A; 3NF4 A; 4MPC A; 5M4P A; 1IVH A; 1EGE A; 4P79 A; 3P4T A; 3OWA A; 3TZ0 A; 3SCE A; 3UBR A; 4DOY A; 1XFV A; 2GBB A; 1PI1 A; 3VKG A; 2CX9 A; 2R03 A; 4F0X A; 3Q23 A; 2D29 A; 4X28 A; 1OAH A; 4L1F A; 2EBH X; 2BU8 A; 2RDZ A; 3CE2 A; 1K8T A; 4Q17 A; 3N0R A; 3D6B A; 2VIG A; 3FO3 A; 4J1V A; 2Z1Q A; 2XS1 A; 3D1I A; 1SK6 A; 5K3H A; 4FF2 A; 3BNH A; 3HWC A; 4HKS A; 4E01 A; 3Q22 A; 3D9E A; 1SIR A; 1PK0 A; 2C0U A; 2VF1 A; 4KSA A; 3S7W A; 4ZXV A; 4DZY A; 3GQT A; 4JIZ A; 2R05 A; 4AKG A; 3MDD A; 2AO2 A; 1IS2 A; 4MP7 A; 2PNR A; 3BNG A; 1X8Z A; 3L1T A; 2R0N A; 4XVX A; 3BNJ A; 3M9V A; 2F6L A; 5B5V A; 1JQI A; 4W9U A; 2BU7 A; 4JEK A; 2E81 A; 1X90 A; 2JBR A; 3MDE A; 2AZE A; 4X28 C; 1XFZ A; 2YYG A; 4KSF A; 4Q0T A; 3GNC A; 3OIB A; 1GU6 A; 3SXQ A; 3Q24 A; 5K3J A; 4Q5C A; 3R7K A; 4O5M A; 1RX0 A; 1Y8N A; 4Q1O A; 4FF1 A; 2XS8 A; 2FP2 A; 4HKR A; 2Q8I A; 4Q4U A; 2Q8F A; 3TOR A; 4FZ4 A; 3C3L A; 5M4K A; 3EON A; 3II9 A; 5M4N A; 3TZ2 A; 5J6A A; 2RFQ A; 4HR3 A; 2ZKJ A; 3TZ5 A; 2EC5 A; 3AFF A; 2BTZ A; 4L3Y A; 2FON A; 3UU9 A; 3MPJ A; 4Q5B A; 3VAD A; 2ZDY A; 4AKI A; 3X0X A; 1R3B A; 2E80 A; 4G97 A; 4MPE A; 4V25 A; 5BRM A; 3CRL A; 3C46 A; 1UDY A; 1EGC A; 2EBA A; 2C12 A; 4KS9 A; 4OO2 A; 1RJ1 A; 3Q0A A; 1EGD A; 2DVL A; 1GJV A; 2R02 A; 3U33 A; 4P13 A; 3D9D A; 1FS7 A; 1U8V A; 1WS9 A; 5BRK A; 2YYJ A; 5B5W A; 3FCJ A; 1XFU A; 2BU6 A; 1XG2 B; 3TZ4 A; 2LFW A; 2IX5 A; 2CJ8 A; 2IX6 A; 4KTO A; 2OJQ A; 4LQS B; 5GJV E; 1T9G A; 3MKH A; 4E00 A; 2WBI A; 1QDB A; 2OEX A; 3KML A; 2OT4 A; 3C2P A; 1XFW A; 1S26 A; 2PG0 A; 2R0M A; 1XFX A; 5GJW E; 2ZO5 A; 3B96 A; 3MPI A; 2CJ5 A; 4WJY A; 2BU5 A; 2E0A A; 3VKH A; 2YYL A; 3D9G A; 1SIQ A; 1Y0V A; 1LVC A; 2OEV A; 4AKH A; 2XQR B; 4KCF A; #chains in the Genus database with same CATH homology 1R2J A; 4NXL A; 3OWM A; 3GM6 A; 2JBS A; 4N5F A; 3LG1 A; 2RF7 A; 1BUC A; 2ZAF A; 4L3Z A; 2REH A; 4IRN A; 2OR0 A; 4U83 A; 3SWO A; 2YYM A; 2YYK A; 3PFD A; 3F29 A; 1UKW A; 3LGQ A; 2A1T A; 3BNF A; 3MMO A; 3TTB A; 3X0Y A; 4IV6 A; 4M9A A; 2JIF A; 5K3I A; 3AFE A; 3D9F A; 1FS8 A; 2VR0 A; 5K3G A; 4ZYJ A; 2J7A A; 2UXW A; 1W07 A; 4RM7 A; 4L38 A; 4L3X A; 2JBT A; 1FS9 A; 3RKH A; 3EOM A; 3SF6 A; 2DDH A; 4G5E A; 3MXL A; 2YYI A; 3NF4 A; 1IVH A; 1EGE A; 3P4T A; 3OWA A; 3SCE A; 3UBR A; 4DOY A; 2CX9 A; 2D29 A; 4X28 A; 1OAH A; 4L1F A; 2RDZ A; 4Q17 A; 3D6B A; 2VIG A; 3FO3 A; 2Z1Q A; 3D1I A; 5K3H A; 3BNH A; 3HWC A; 3D9E A; 1SIR A; 2C0U A; 3S7W A; 4ZXV A; 3GQT A; 3MDD A; 1IS2 A; 3BNG A; 3L1T A; 2R0N A; 4XVX A; 3BNJ A; 3M9V A; 1JQI A; 4W9U A; 4JEK A; 2E81 A; 2JBR A; 3MDE A; 2YYG A; 4X28 C; 4Q0T A; 3SXQ A; 3GNC A; 3OIB A; 1GU6 A; 5K3J A; 4Q5C A; 3R7K A; 4O5M A; 1RX0 A; 4Q1O A; 3TOR A; 4Q4U A; 3EON A; 3II9 A; 2RFQ A; 4HR3 A; 3AFF A; 4L3Y A; 3UU9 A; 2FON A; 3MPJ A; 4Q5B A; 3X0X A; 2E80 A; 1UDY A; 1EGC A; 2EBA A; 2C12 A; 4OO2 A; 1EGD A; 2DVL A; 4P13 A; 3D9D A; 1FS7 A; 1U8V A; 1WS9 A; 2YYJ A; 3FCJ A; 2IX5 A; 2IX6 A; 4KTO A; 1T9G A; 3MKH A; 2WBI A; 1QDB A; 2OT4 A; 2PG0 A; 2R0M A; 2ZO5 A; 3B96 A; 3MPI A; 4WJY A; 2YYL A; 3D9G A; 1SIQ A; 4KCF A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
