2C0UA

Crystal structure of a covalent complex of nitroalkane oxidase trapped during substrate turnover
Total Genus 143
50100150200250300350400020406080100120140
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
143
sequence length
430
structure length
430
Chain Sequence
VDFKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILEELFAVEPATSITIVATALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVMALEDYEPWAATYGS
50100150200250300350400400300200100
020406080100120140Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH2 (28-33)EMPTYAH4 (73-85)S6 (226-229)AH3 (38-55)TIV5 (234-237)TII1 (88-91)TIV3 (120-123)AH5 (91-101)TIV1 (56-59)3H2 (59-61)AH9 (314-342)TVIII2 (181-184)TIV2 (101-105)AH6 (110-117)TI1 (103-106)TI2 (104-107)S7 (244-253)3H4 (118-120)TII3 (170-173)TI7 (175-178)TII2 (144-147)TI3 (135-138)TI4 (139-142)TI5 (141-144)S4 (183-190)TII'1 (157-160)TVIII1 (150-153)S2 (153-157)S3 (160-168)TIV4 (174-177)TI6 (172-175)S5 (208-214)3H5 (204-207)TI9 (199-202)3H6 (254-256)AH7 (215-220)TI10 (222-225)TI12 (237-240)TIV6 (235-238)TI14 (380-383)AH8 (263-300)TI15 (397-400)AH12 (387-395)AH11 (357-372)3H8 (373-376)TI'1 (303-306)3H9 (412-415)TI13 (343-346)PH1 (405-409)AH10 (348-353)TIV8 (377-381)TI16 (398-401)TIV9 (400-403)TIV11 (415-419)AH1 (8-24)3H1 (25-27)3H3 (64-66)S1 (129-130)TVIII3 (191-194)TI8 (193-196)TI17 (409-412)3H7 (310-312)Updating...
connected with : NaN
molecule tags Oxidoreductase
source organism Fusarium oxysporum
publication title Crystal Structures of Nitroalkane Oxidase: Insights Into the Reaction Mechanism from a Covalent Complex of the Flavoenzyme Trapped During Turnover.
pubmed doi rcsb
molecule keywords NITROALKANE OXIDASE
total genus 143
structure length 430
sequence length 430
chains with identical sequence B, C, D
ec nomenclature ec 1.7.3.1: Nitroalkane oxidase.
pdb deposition date 2005-09-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 2c0uA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 2c0uA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 2c0uA02
4RM7A 3MDEA 3D9DA 1EGEA 4X28C 4Q17A 2JBRA 2DVLA 3OWAA 2REHA 4W9UA 2YYMA 4OO2A 3S7WA 2R0MA 4KTOA 1OAHA 3FO3A 1SIQA 2RDZA 4WJYA 3TORA 2R0NA 1R2JA 1QDBA 3AFEA 4L3ZA 3B96A 4JEKA 4M9AA 1EGDA 4IRNA 3F29A 2CX9A 3II9A 2Z1QA 4L38A 4NXLA 3SXQA 2VR0A 4L3XA 4P13A 3R7KA 2JBTA 3MPIA 4L1FA 1IVHA 5K3GA 3RKHA 3PFDA 2ZAFA 2PG0A 3NF4A 4ZYJA 4G5EA 2IX5A 2OR0A 2J7AA 3MDDA 2D29A 2RF7A 3GM6A 2JIFA 5K3IA 3L1TA 3D1IA 2YYLA 3P4TA 1BUCA 4Q4UA 3BNFA 3EOMA 3D9EA 3D9GA 2YYJA 1EGCA 2YYGA 3MPJA 5K3HA 1WS9A 2EBAA 4IV6A 4Q1OA 1GU6A 5K3JA 2IX6A 3MKHA 3UBRA 2WBIA 1SIRA 3D6BA 3BNHA 1U8VA 3HWCA 3LG1A 4U83A 4Q5BA 3AFFA 2DDHA 2E80A 4HR3A 3MXLA 2RFQA 4KCFA 3LGQA 1T9GA 2ZO5A 2JBSA 4Q0TA 2YYKA 1FS7A 3X0XA 3EONA 1FS8A 3TTBA 3BNJA 3M9VA 3BNGA 3SF6A 2OT4A 4Q5CA 3D9FA 3FCJA 3GNCA 1UKWA 1W07A 2C0UA 3SWOA 4DOYA 3SCEA 4XVXA 4L3YA 1JQIA 2A1TA 1FS9A 3X0YA 3GQTA 2VIGA 4ZXVA 3MMOA 2FONA 4X28A 2YYIA 3OIBA 4O5MA 2UXWA 2E81A 1IS2A 3UU9A 3OWMA 2C12A 4N5FA 1RX0A 1UDYA
chains in the Genus database with same CATH superfamily
4RM7A 2BU2A 3MDEA 3D9DA 1EGEA 4X28C 4Q17A 2JBRA 2DVLA 3OWAA 2REHA 4W9UA 1RP3A 2AZEA 2YYMA 4OO2A 3S7WA 3Q24A 2R0MA 4KTOA 1OAHA 3FO3A 5J6AA 1SIQA 2RDZA 3TZ4A 1X8ZA 1PK0A 1Y8PA 3KMLA 4WJYA 4JIOA 2CJ6A 2Q8IA 3TORA 1GKXA 2R05A 4KS9A 2R0NA 2QR4A 1R2JA 1LVCA 1QDBA 3AFEA 1X90A 4FF2A 4L3ZA 5GJWE 3B96A 3TZ2A 1RJ1A 3VKHA 4JEKA 4M9AA 3VKGA 1PI1A 1EGDA 4IRNA 1Y0VA 3F29A 2CX9A 3II9A 2Z1QA 2Q8HA 2F6LA 4G97A 2EBFX 4E02A 4L38A 1Y8OA 4NXLA 3SXQA 2VR0A 4L3XA 1XFUA 2CJ4A 2ZDYA 5B5WA 4P13A 3R7KA 2JBTA 3MPIA 4L1FA 1IVHA 5K3GA 3RKHA 1K93A 4MPCA 3PFDA 2ZAFA 2OJQA 2PG0A 3U33A 2E0AA 3NF4A 4ZYJA 2CJ7A 4HKSA 4LQQB 4MPNA 4F0XA 4G5EA 2IX5A 2OR0A 2J7AA 2AO2A 3MDDA 2D29A 2BTZA 4FF4A 1GJVA 2FP2A 2RF7A 3GM6A 2JIFA 5K3IA 2FP1A 2R02A 3D1IA 3L1TA 2YYLA 2BU6A 3CRKA 3P4TA 1XFZA 3VADA 1BUCA 1JM6A 4Q4UA 2CJ5A 3BNFA 2Q8FA 1RJ4A 3EOMA 5EZ3A 3D9EA 3D9GA 1K90A 2YYJA 1EGCA 2YYGA 3MPJA 5M4KA 3Q23A 5K3HA 1WS9A 4JIZA 3TZ0A 2EBAA 3DJLA 5B5VA 4AKIA 4IV6A 1XFVA 2ZKJA 2OEVA 4MP7A 3CE2A 1GU6A 4LQSB 4Q1OA 5K3JA 4H81A 2LFWA 3C46A 2IX6A 3MKHA 2XQRB 4AKGA 5BRKA 3UBRA 2WBIA 1SIRA 2HJNA 3D6BA 3BNHA 1R3BA 2PNRA 2Q8GA 1XFWA 1GKZA 1U8VA 5M4NA 1K8TA 2EBHX 3HWCA 1XG2B 4U83A 3LG1A 4Q5BA 3AFFA 4HKRA 2DDHA 5GJVE 2E80A 4DZYA 4HR3A 3MXLA 2OEXA 2RFQA 5J71A 4KCFA 3LGQA 4V25A 4V26A 1T9GA 2ZO5A 3X29A 2JBSA 4Q0TA 4H7QA 5M4PA 2YYKA 1FS7A 3X0XA 3EONA 1FS8A 2PO4A 3TTBA 1SK6A 4FZ4A 4MP2A 4E01A 2BU8A 3M9VA 3BNJA 3SF6A 3BNGA 2OT4A 4Q5CA 3D9FA 3FCJA 3CRLA 3GNCA 1UKWA 1W07A 2C0UA 4AI6A 2R03A 3SWOA 2XS8A 4J1VA 4H85A 4DOYA 2CJ8A 4KSAA 3SCEA 4XVXA 4KSFA 4L3YA 1X91A 1JQIA 2A1TA 1FS9A 1S26A 3X0YA 5B6BA 5BRMA 3GQTA 3C3LA 2VIGA 4ZXVA 1XFYA 3MMOA 3C2PA 3Q22A 2GBBA 2XS1A 2YGWA 2FONA 4X28A 2YYIA 3OIBA 4MPEA 4FF1A 4FF3A 4O5MA 4P79A 3Q0AA 2UXWA 2E81A 1IS2A 3UU9A 1Y8NA 1XFXA 3OWMA 2C12A 4AKHA 4N5FA 1RX0A 4QICA 3D2RA 2EC5A 2ZDXA 4E00A 1UDYA 5M4MA 2VF1A 3TZ5A 1SC5A 2BU7A 2BU5A 3N0RA
chains in the Genus database with same CATH topology
4RM7A 3MDEA 3D9DA 1EGEA 4X28C 4Q17A 2JBRA 2DVLA 3OWAA 2REHA 4W9UA 2YYMA 4OO2A 3S7WA 2R0MA 4KTOA 1OAHA 3FO3A 1SIQA 2RDZA 4WJYA 3TORA 2R0NA 1R2JA 1QDBA 3AFEA 4L3ZA 3B96A 4JEKA 4M9AA 1EGDA 4IRNA 3F29A 2CX9A 3II9A 2Z1QA 4L38A 4NXLA 3SXQA 2VR0A 4L3XA 4P13A 3R7KA 2JBTA 3MPIA 4L1FA 1IVHA 5K3GA 3RKHA 3PFDA 2ZAFA 2PG0A 3NF4A 4ZYJA 4G5EA 2IX5A 2OR0A 2J7AA 3MDDA 2D29A 2RF7A 3GM6A 2JIFA 5K3IA 3L1TA 3D1IA 2YYLA 3P4TA 1BUCA 4Q4UA 3BNFA 3EOMA 3D9EA 3D9GA 2YYJA 1EGCA 2YYGA 3MPJA 5K3HA 1WS9A 2EBAA 4IV6A 4Q1OA 1GU6A 5K3JA 2IX6A 3MKHA 3UBRA 2WBIA 1SIRA 3D6BA 3BNHA 1U8VA 3HWCA 3LG1A 4U83A 4Q5BA 3AFFA 2DDHA 2E80A 4HR3A 3MXLA 2RFQA 4KCFA 3LGQA 1T9GA 2ZO5A 2JBSA 4Q0TA 2YYKA 1FS7A 3X0XA 3EONA 1FS8A 3TTBA 3BNJA 3M9VA 3BNGA 3SF6A 2OT4A 4Q5CA 3D9FA 3FCJA 3GNCA 1UKWA 1W07A 2C0UA 3SWOA 4DOYA 3SCEA 4XVXA 4L3YA 1JQIA 2A1TA 1FS9A 3X0YA 3GQTA 2VIGA 4ZXVA 3MMOA 2FONA 4X28A 2YYIA 3OIBA 4O5MA 2UXWA 2E81A 1IS2A 3UU9A 3OWMA 2C12A 4N5FA 1RX0A 1UDYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4RM7 A;  3MDE A;  3D9D A;  1EGE A;  4X28 C;  4Q17 A;  2JBR A;  2DVL A;  3OWA A;  2REH A;  4W9U A;  2YYM A;  4OO2 A;  3S7W A;  2R0M A;  4KTO A;  1OAH A;  3FO3 A;  1SIQ A;  2RDZ A;  4WJY A;  3TOR A;  2R0N A;  1R2J A;  1QDB A;  3AFE A;  4L3Z A;  3B96 A;  4JEK A;  4M9A A;  1EGD A;  4IRN A;  3F29 A;  2CX9 A;  3II9 A;  2Z1Q A;  4L38 A;  4NXL A;  3SXQ A;  2VR0 A;  4L3X A;  4P13 A;  3R7K A;  2JBT A;  3MPI A;  4L1F A;  1IVH A;  5K3G A;  3RKH A;  3PFD A;  2ZAF A;  2PG0 A;  3NF4 A;  4ZYJ A;  4G5E A;  2IX5 A;  2OR0 A;  2J7A A;  3MDD A;  2D29 A;  2RF7 A;  3GM6 A;  2JIF A;  5K3I A;  3L1T A;  3D1I A;  2YYL A;  3P4T A;  1BUC A;  4Q4U A;  3BNF A;  3EOM A;  3D9E A;  3D9G A;  2YYJ A;  1EGC A;  2YYG A;  3MPJ A;  5K3H A;  1WS9 A;  2EBA A;  4IV6 A;  4Q1O A;  1GU6 A;  5K3J A;  2IX6 A;  3MKH A;  3UBR A;  2WBI A;  1SIR A;  3D6B A;  3BNH A;  1U8V A;  3HWC A;  3LG1 A;  4U83 A;  4Q5B A;  3AFF A;  2DDH A;  2E80 A;  4HR3 A;  3MXL A;  2RFQ A;  4KCF A;  3LGQ A;  1T9G A;  2ZO5 A;  2JBS A;  4Q0T A;  2YYK A;  1FS7 A;  3X0X A;  3EON A;  1FS8 A;  3TTB A;  3BNJ A;  3M9V A;  3BNG A;  3SF6 A;  2OT4 A;  4Q5C A;  3D9F A;  3FCJ A;  3GNC A;  1UKW A;  1W07 A;  2C0U A;  3SWO A;  4DOY A;  3SCE A;  4XVX A;  4L3Y A;  1JQI A;  2A1T A;  1FS9 A;  3X0Y A;  3GQT A;  2VIG A;  4ZXV A;  3MMO A;  2FON A;  4X28 A;  2YYI A;  3OIB A;  4O5M A;  2UXW A;  2E81 A;  1IS2 A;  3UU9 A;  3OWM A;  2C12 A;  4N5F A;  1RX0 A;  1UDY A; 
#chains in the Genus database with same CATH topology
 4RM7 A;  2BU2 A;  3MDE A;  3D9D A;  1EGE A;  4X28 C;  4Q17 A;  2JBR A;  2DVL A;  3OWA A;  2REH A;  4W9U A;  1RP3 A;  2AZE A;  2YYM A;  4OO2 A;  3S7W A;  3Q24 A;  2R0M A;  4KTO A;  1OAH A;  3FO3 A;  5J6A A;  1SIQ A;  2RDZ A;  3TZ4 A;  1X8Z A;  1PK0 A;  1Y8P A;  3KML A;  4WJY A;  4JIO A;  2CJ6 A;  2Q8I A;  3TOR A;  1GKX A;  2R05 A;  4KS9 A;  2R0N A;  2QR4 A;  1R2J A;  1LVC A;  1QDB A;  3AFE A;  1X90 A;  4FF2 A;  4L3Z A;  5GJW E;  3B96 A;  3TZ2 A;  1RJ1 A;  3VKH A;  4JEK A;  4M9A A;  3VKG A;  1PI1 A;  1EGD A;  4IRN A;  1Y0V A;  3F29 A;  2CX9 A;  3II9 A;  2Z1Q A;  2Q8H A;  2F6L A;  4G97 A;  2EBF X;  4E02 A;  4L38 A;  1Y8O A;  4NXL A;  3SXQ A;  2VR0 A;  4L3X A;  1XFU A;  2CJ4 A;  2ZDY A;  5B5W A;  4P13 A;  3R7K A;  2JBT A;  3MPI A;  4L1F A;  1IVH A;  5K3G A;  3RKH A;  1K93 A;  4MPC A;  3PFD A;  2ZAF A;  2OJQ A;  2PG0 A;  3U33 A;  2E0A A;  3NF4 A;  4ZYJ A;  2CJ7 A;  4HKS A;  4LQQ B;  4MPN A;  4F0X A;  4G5E A;  2IX5 A;  2OR0 A;  2J7A A;  2AO2 A;  3MDD A;  2D29 A;  2BTZ A;  4FF4 A;  1GJV A;  2FP2 A;  2RF7 A;  3GM6 A;  2JIF A;  5K3I A;  2FP1 A;  2R02 A;  3D1I A;  3L1T A;  2YYL A;  2BU6 A;  3CRK A;  3P4T A;  1XFZ A;  3VAD A;  1BUC A;  1JM6 A;  4Q4U A;  2CJ5 A;  3BNF A;  2Q8F A;  1RJ4 A;  3EOM A;  5EZ3 A;  3D9E A;  3D9G A;  1K90 A;  2YYJ A;  1EGC A;  2YYG A;  3MPJ A;  5M4K A;  3Q23 A;  5K3H A;  1WS9 A;  4JIZ A;  3TZ0 A;  2EBA A;  3DJL A;  5B5V A;  4AKI A;  4IV6 A;  1XFV A;  2ZKJ A;  2OEV A;  4MP7 A;  3CE2 A;  1GU6 A;  4LQS B;  4Q1O A;  5K3J A;  4H81 A;  2LFW A;  3C46 A;  2IX6 A;  3MKH A;  2XQR B;  4AKG A;  5BRK A;  3UBR A;  2WBI A;  1SIR A;  2HJN A;  3D6B A;  3BNH A;  1R3B A;  2PNR A;  2Q8G A;  1XFW A;  1GKZ A;  1U8V A;  5M4N A;  1K8T A;  2EBH X;  3HWC A;  1XG2 B;  4U83 A;  3LG1 A;  4Q5B A;  3AFF A;  4HKR A;  2DDH A;  5GJV E;  2E80 A;  4DZY A;  4HR3 A;  3MXL A;  2OEX A;  2RFQ A;  5J71 A;  4KCF A;  3LGQ A;  4V25 A;  4V26 A;  1T9G A;  2ZO5 A;  3X29 A;  2JBS A;  4Q0T A;  4H7Q A;  5M4P A;  2YYK A;  1FS7 A;  3X0X A;  3EON A;  1FS8 A;  2PO4 A;  3TTB A;  1SK6 A;  4FZ4 A;  4MP2 A;  4E01 A;  2BU8 A;  3M9V A;  3BNJ A;  3SF6 A;  3BNG A;  2OT4 A;  4Q5C A;  3D9F A;  3FCJ A;  3CRL A;  3GNC A;  1UKW A;  1W07 A;  2C0U A;  4AI6 A;  2R03 A;  3SWO A;  2XS8 A;  4J1V A;  4H85 A;  4DOY A;  2CJ8 A;  4KSA A;  3SCE A;  4XVX A;  4KSF A;  4L3Y A;  1X91 A;  1JQI A;  2A1T A;  1FS9 A;  1S26 A;  3X0Y A;  5B6B A;  5BRM A;  3GQT A;  3C3L A;  2VIG A;  4ZXV A;  1XFY A;  3MMO A;  3C2P A;  3Q22 A;  2GBB A;  2XS1 A;  2YGW A;  2FON A;  4X28 A;  2YYI A;  3OIB A;  4MPE A;  4FF1 A;  4FF3 A;  4O5M A;  4P79 A;  3Q0A A;  2UXW A;  2E81 A;  1IS2 A;  3UU9 A;  1Y8N A;  1XFX A;  3OWM A;  2C12 A;  4AKH A;  4N5F A;  1RX0 A;  4QIC A;  3D2R A;  2EC5 A;  2ZDX A;  4E00 A;  1UDY A;  5M4M A;  2VF1 A;  3TZ5 A;  1SC5 A;  2BU7 A;  2BU5 A;  3N0R A; 
#chains in the Genus database with same CATH homology
 4RM7 A;  3MDE A;  3D9D A;  1EGE A;  4X28 C;  4Q17 A;  2JBR A;  2DVL A;  3OWA A;  2REH A;  4W9U A;  2YYM A;  4OO2 A;  3S7W A;  2R0M A;  4KTO A;  1OAH A;  3FO3 A;  1SIQ A;  2RDZ A;  4WJY A;  3TOR A;  2R0N A;  1R2J A;  1QDB A;  3AFE A;  4L3Z A;  3B96 A;  4JEK A;  4M9A A;  1EGD A;  4IRN A;  3F29 A;  2CX9 A;  3II9 A;  2Z1Q A;  4L38 A;  4NXL A;  3SXQ A;  2VR0 A;  4L3X A;  4P13 A;  3R7K A;  2JBT A;  3MPI A;  4L1F A;  1IVH A;  5K3G A;  3RKH A;  3PFD A;  2ZAF A;  2PG0 A;  3NF4 A;  4ZYJ A;  4G5E A;  2IX5 A;  2OR0 A;  2J7A A;  3MDD A;  2D29 A;  2RF7 A;  3GM6 A;  2JIF A;  5K3I A;  3L1T A;  3D1I A;  2YYL A;  3P4T A;  1BUC A;  4Q4U A;  3BNF A;  3EOM A;  3D9E A;  3D9G A;  2YYJ A;  1EGC A;  2YYG A;  3MPJ A;  5K3H A;  1WS9 A;  2EBA A;  4IV6 A;  4Q1O A;  1GU6 A;  5K3J A;  2IX6 A;  3MKH A;  3UBR A;  2WBI A;  1SIR A;  3D6B A;  3BNH A;  1U8V A;  3HWC A;  3LG1 A;  4U83 A;  4Q5B A;  3AFF A;  2DDH A;  2E80 A;  4HR3 A;  3MXL A;  2RFQ A;  4KCF A;  3LGQ A;  1T9G A;  2ZO5 A;  2JBS A;  4Q0T A;  2YYK A;  1FS7 A;  3X0X A;  3EON A;  1FS8 A;  3TTB A;  3BNJ A;  3M9V A;  3BNG A;  3SF6 A;  2OT4 A;  4Q5C A;  3D9F A;  3FCJ A;  3GNC A;  1UKW A;  1W07 A;  2C0U A;  3SWO A;  4DOY A;  3SCE A;  4XVX A;  4L3Y A;  1JQI A;  2A1T A;  1FS9 A;  3X0Y A;  3GQT A;  2VIG A;  4ZXV A;  3MMO A;  2FON A;  4X28 A;  2YYI A;  3OIB A;  4O5M A;  2UXW A;  2E81 A;  1IS2 A;  3UU9 A;  3OWM A;  2C12 A;  4N5F A;  1RX0 A;  1UDY A; 
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