2C12 | Genus

Total Genus 158

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	158
sequence length	430
structure length	430
Chain Sequence	VDFKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILEELFAVEPATSITIVATALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVMALEDYEPWAATYGS

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Oxidoreductase
source organism	Fusarium oxysporum
publication title	Crystal Structures of Nitroalkane Oxidase: Insights Into the Reaction Mechanism from a Covalent Complex of the Flavoenzyme Trapped During Turnover. pubmed doi rcsb
molecule keywords	NITROALKANE OXIDASE
total genus	158
structure length	430
sequence length	430
chains with identical sequence	B, C, D, E, F
ec nomenclature	ec 1.7.3.1: Nitroalkane oxidase.
pdb deposition date	2005-09-10

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00441	Acyl-CoA_dh_1	Acyl-CoA dehydrogenase, C-terminal domain
A	PF02771	Acyl-CoA_dh_N	Acyl-CoA dehydrogenase, N-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.540.10	Mainly Alpha	Orthogonal Bundle	Butyryl-Coa Dehydrogenase, subunit A; domain 1	Acyl-CoA dehydrogenase/oxidase, N-terminal domain	2c12A01
1.20.140.10	Mainly Alpha	Up-down Bundle	Butyryl-CoA Dehydrogenase, subunit A; domain 3	Butyryl-CoA Dehydrogenase, subunit A, domain 3	2c12A03
2.40.110.10	Mainly Beta	Beta Barrel	Butyryl-CoA Dehydrogenase, subunit A; domain 2	Butyryl-CoA Dehydrogenase, subunit A, domain 2	2c12A02

3HWCA 3FO3A 4U83A 2J7AA 3AFFA 1EGEA 3D9GA 1FS7A 1FS9A 2E81A 4G5EA 2OT4A 3LGQA 2RDZA 2JBSA 3M9VA 4ZYJA 4Q17A 2REHA 4M9AA 1UDYA 3FCJA 4WJYA 3D9EA 2Z1QA 3UU9A 3TTBA 2IX6A 3MKHA 2OR0A 2D29A 4Q5BA 4RM7A 1WS9A 3BNGA 4Q0TA 1EGDA 3AFEA 2CX9A 4DOYA 1UKWA 3MPIA 4L3ZA 3PFDA 4JEKA 1SIRA 3X0XA 2E80A 3GM6A 2R0NA 3X0YA 4L3XA 2ZO5A 4IRNA 3F29A 3D6BA 3P4TA 3OWMA 4NXLA 2IX5A 2RFQA 2YYGA 1IS2A 4O5MA 3EONA 3BNFA 4N5FA 3SWOA 2DDHA 3NF4A 3MPJA 2RF7A 2ZAFA 2DVLA 1OAHA 4L1FA 3SF6A 5K3IA 3TORA 3GQTA 2JBRA 3OIBA 2JBTA 2EBAA 3LG1A 1U8VA 4OO2A 3SCEA 4P13A 4Q4UA 2PG0A 4KTOA 2VIGA 1FS8A 2WBIA 3MDDA 3GNCA 4X28A 2C12A 4ZXVA 2YYLA 3D9DA 2FONA 4W9UA 5K3JA 3B96A 1JQIA 4L38A 3EOMA 4IV6A 3RKHA 1T9GA 1SIQA 5K3HA 2YYJA 1GU6A 3II9A 2YYMA 1QDBA 4XVXA 3D1IA 3MXLA 4Q5CA 1R2JA 2YYIA 2UXWA 4X28C 3SXQA 3MMOA 1RX0A 3MDEA 4Q1OA 3UBRA 2YYKA 3BNHA 3OWAA 2A1TA 2R0MA 3D9FA 3BNJA 3R7KA 3S7WA 5K3GA 4L3YA 1W07A 2C0UA 2JIFA 4KCFA 1BUCA 1EGCA 2VR0A 3L1TA 1IVHA 4HR3A
chains in the Genus database with same CATH superfamily

3HWCA 4DZYA 2CJ8A 1X90A 3FO3A 2AZEA 4H85A 3VKGA 4U83A 2J7AA 3AFFA 2BTZA 4KSAA 1EGEA 3D9GA 4H81A 1FS7A 1XFUA 1FS9A 1R3BA 4QICA 5GJVE 2E81A 2PNRA 4FZ4A 4G5EA 4JIZA 2R02A 1S26A 2RDZA 3LGQA 4P79A 5M4KA 3Q22A 3VADA 4J1VA 2JBSA 3M9VA 4ZYJA 2VF1A 4Q17A 4E02A 2ZDYA 2REHA 4E01A 2BU5A 2BU6A 2CJ6A 4M9AA 1UDYA 3FCJA 4WJYA 3D9EA 5J71A 2Z1QA 3UU9A 3TTBA 2IX6A 3MKHA 2OR0A 2D29A 1X8ZA 4Q5BA 4RM7A 2BU8A 2BU7A 3Q0AA 4LQSB 1SC5A 1WS9A 3BNGA 4Q0TA 2CJ4A 4KSFA 1EGDA 3AFEA 2CX9A 2LFWA 5BRMA 3TZ5A 2Q8HA 3C2PA 4DOYA 1UKWA 4G97A 2Q8GA 3MPIA 4L3ZA 3PFDA 4JEKA 1SIRA 3X0XA 2E80A 3GM6A 5BRKA 3VKHA 2R0NA 3X0YA 4L3XA 2ZO5A 4IRNA 3F29A 3D6BA 3P4TA 3KMLA 3OWMA 5B6BA 4AKHA 4NXLA 2IX5A 4AKGA 2RFQA 2YYGA 3Q23A 1IS2A 4O5MA 3EONA 1XFVA 3Q24A 3N0RA 4FF1A 3TZ0A 1XFYA 3BNFA 4N5FA 3SWOA 2DDHA 4MP2A 3NF4A 3MPJA 2RF7A 2ZAFA 2ZKJA 2XS1A 2DVLA 4H7QA 1OAHA 4MPEA 4L1FA 3SF6A 5K3IA 5GJWE 5EZ3A 3C46A 3TORA 2ZDXA 3GQTA 2JBRA 1GKXA 3OIBA 2E0AA 3D2RA 4V25A 2JBTA 4E00A 2EBAA 3LG1A 4FF3A 1U8VA 4OO2A 3SCEA 3TZ2A 1K90A 2AO2A 1Y0VA 4P13A 4MPCA 4Q4UA 5B5WA 3CRKA 2PG0A 2XS8A 4KTOA 4AI6A 2VIGA 2OEVA 5M4PA 1FS8A 2FP1A 2OT4A 4F0XA 4HKSA 1XFWA 4JIOA 2WBIA 3MDDA 2Q8IA 5M4MA 3DJLA 3GNCA 2GBBA 4X28A 1K93A 1RJ4A 2C12A 4ZXVA 4HKRA 2YYLA 4FF4A 3D9DA 2FONA 3TZ4A 4W9UA 5K3JA 3B96A 1LVCA 1XFXA 2CJ5A 2R03A 3C3LA 4FF2A 1JQIA 4L38A 4KS9A 3EOMA 4IV6A 4LQQB 5B5VA 3RKHA 2QR4A 3U33A 1T9GA 1Y8PA 1SIQA 5K3HA 1SK6A 1GU6A 1XG2B 2EBHX 3II9A 2OJQA 2YYJA 2YYMA 2YGWA 1QDBA 2CJ7A 4XVXA 3D1IA 3MXLA 4Q5CA 1RP3A 1R2JA 1Y8NA 1JM6A 2UXWA 1PK0A 4X28C 1X91A 2HJNA 2YYIA 3MMOA 1RX0A 3MDEA 3CRLA 3SXQA 4Q1OA 1K8TA 3UBRA 2YYKA 3BNHA 3OWAA 5M4NA 2PO4A 2A1TA 2R0MA 1XFZA 2EC5A 3D9FA 3CE2A 3BNJA 5J6AA 4MPNA 2BU2A 1GJVA 1RJ1A 1PI1A 2FP2A 3R7KA 1GKZA 5K3GA 1Y8OA 2F6LA 4L3YA 4V26A 3S7WA 4AKIA 1W07A 2C0UA 2JIFA 4KCFA 1BUCA 1EGCA 2OEXA 2VR0A 4MP7A 2XQRB 2R05A 3L1TA 1IVHA 2EBFX 2Q8FA 3X29A 4HR3A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3HWC A;  3FO3 A;  4U83 A;  2J7A A;  3AFF A;  1EGE A;  3D9G A;  1FS7 A;  1FS9 A;  2E81 A;  4G5E A;  2OT4 A;  3LGQ A;  2RDZ A;  2JBS A;  3M9V A;  4ZYJ A;  4Q17 A;  2REH A;  4M9A A;  1UDY A;  3FCJ A;  4WJY A;  3D9E A;  2Z1Q A;  3UU9 A;  3TTB A;  2IX6 A;  3MKH A;  2OR0 A;  2D29 A;  4Q5B A;  4RM7 A;  1WS9 A;  3BNG A;  4Q0T A;  1EGD A;  3AFE A;  2CX9 A;  4DOY A;  1UKW A;  3MPI A;  4L3Z A;  3PFD A;  4JEK A;  1SIR A;  3X0X A;  2E80 A;  3GM6 A;  2R0N A;  3X0Y A;  4L3X A;  2ZO5 A;  4IRN A;  3F29 A;  3D6B A;  3P4T A;  3OWM A;  4NXL A;  2IX5 A;  2RFQ A;  2YYG A;  1IS2 A;  4O5M A;  3EON A;  3BNF A;  4N5F A;  3SWO A;  2DDH A;  3NF4 A;  3MPJ A;  2RF7 A;  2ZAF A;  2DVL A;  1OAH A;  4L1F A;  3SF6 A;  5K3I A;  3TOR A;  3GQT A;  2JBR A;  3OIB A;  2JBT A;  2EBA A;  3LG1 A;  1U8V A;  4OO2 A;  3SCE A;  4P13 A;  4Q4U A;  2PG0 A;  4KTO A;  2VIG A;  1FS8 A;  2WBI A;  3MDD A;  3GNC A;  4X28 A;  2C12 A;  4ZXV A;  2YYL A;  3D9D A;  2FON A;  4W9U A;  5K3J A;  3B96 A;  1JQI A;  4L38 A;  3EOM A;  4IV6 A;  3RKH A;  1T9G A;  1SIQ A;  5K3H A;  2YYJ A;  1GU6 A;  3II9 A;  2YYM A;  1QDB A;  4XVX A;  3D1I A;  3MXL A;  4Q5C A;  1R2J A;  2YYI A;  2UXW A;  4X28 C;  3SXQ A;  3MMO A;  1RX0 A;  3MDE A;  4Q1O A;  3UBR A;  2YYK A;  3BNH A;  3OWA A;  2A1T A;  2R0M A;  3D9F A;  3BNJ A;  3R7K A;  3S7W A;  5K3G A;  4L3Y A;  1W07 A;  2C0U A;  2JIF A;  4KCF A;  1BUC A;  1EGC A;  2VR0 A;  3L1T A;  1IVH A;  4HR3 A; 
#chains in the Genus database with same CATH topology
 3HWC A;  4DZY A;  2CJ8 A;  1X90 A;  3FO3 A;  2AZE A;  4H85 A;  3VKG A;  4U83 A;  2J7A A;  3AFF A;  2BTZ A;  4KSA A;  1EGE A;  3D9G A;  4H81 A;  1FS7 A;  1XFU A;  1FS9 A;  1R3B A;  4QIC A;  5GJV E;  2E81 A;  2PNR A;  4FZ4 A;  4G5E A;  4JIZ A;  2R02 A;  1S26 A;  2RDZ A;  3LGQ A;  4P79 A;  5M4K A;  3Q22 A;  3VAD A;  4J1V A;  2JBS A;  3M9V A;  4ZYJ A;  2VF1 A;  4Q17 A;  4E02 A;  2ZDY A;  2REH A;  4E01 A;  2BU5 A;  2BU6 A;  2CJ6 A;  4M9A A;  1UDY A;  3FCJ A;  4WJY A;  3D9E A;  5J71 A;  2Z1Q A;  3UU9 A;  3TTB A;  2IX6 A;  3MKH A;  2OR0 A;  2D29 A;  1X8Z A;  4Q5B A;  4RM7 A;  2BU8 A;  2BU7 A;  3Q0A A;  4LQS B;  1SC5 A;  1WS9 A;  3BNG A;  4Q0T A;  2CJ4 A;  4KSF A;  1EGD A;  3AFE A;  2CX9 A;  2LFW A;  5BRM A;  3TZ5 A;  2Q8H A;  3C2P A;  4DOY A;  1UKW A;  4G97 A;  2Q8G A;  3MPI A;  4L3Z A;  3PFD A;  4JEK A;  1SIR A;  3X0X A;  2E80 A;  3GM6 A;  5BRK A;  3VKH A;  2R0N A;  3X0Y A;  4L3X A;  2ZO5 A;  4IRN A;  3F29 A;  3D6B A;  3P4T A;  3KML A;  3OWM A;  5B6B A;  4AKH A;  4NXL A;  2IX5 A;  4AKG A;  2RFQ A;  2YYG A;  3Q23 A;  1IS2 A;  4O5M A;  3EON A;  1XFV A;  3Q24 A;  3N0R A;  4FF1 A;  3TZ0 A;  1XFY A;  3BNF A;  4N5F A;  3SWO A;  2DDH A;  4MP2 A;  3NF4 A;  3MPJ A;  2RF7 A;  2ZAF A;  2ZKJ A;  2XS1 A;  2DVL A;  4H7Q A;  1OAH A;  4MPE A;  4L1F A;  3SF6 A;  5K3I A;  5GJW E;  5EZ3 A;  3C46 A;  3TOR A;  2ZDX A;  3GQT A;  2JBR A;  1GKX A;  3OIB A;  2E0A A;  3D2R A;  4V25 A;  2JBT A;  4E00 A;  2EBA A;  3LG1 A;  4FF3 A;  1U8V A;  4OO2 A;  3SCE A;  3TZ2 A;  1K90 A;  2AO2 A;  1Y0V A;  4P13 A;  4MPC A;  4Q4U A;  5B5W A;  3CRK A;  2PG0 A;  2XS8 A;  4KTO A;  4AI6 A;  2VIG A;  2OEV A;  5M4P A;  1FS8 A;  2FP1 A;  2OT4 A;  4F0X A;  4HKS A;  1XFW A;  4JIO A;  2WBI A;  3MDD A;  2Q8I A;  5M4M A;  3DJL A;  3GNC A;  2GBB A;  4X28 A;  1K93 A;  1RJ4 A;  2C12 A;  4ZXV A;  4HKR A;  2YYL A;  4FF4 A;  3D9D A;  2FON A;  3TZ4 A;  4W9U A;  5K3J A;  3B96 A;  1LVC A;  1XFX A;  2CJ5 A;  2R03 A;  3C3L A;  4FF2 A;  1JQI A;  4L38 A;  4KS9 A;  3EOM A;  4IV6 A;  4LQQ B;  5B5V A;  3RKH A;  2QR4 A;  3U33 A;  1T9G A;  1Y8P A;  1SIQ A;  5K3H A;  1SK6 A;  1GU6 A;  1XG2 B;  2EBH X;  3II9 A;  2OJQ A;  2YYJ A;  2YYM A;  2YGW A;  1QDB A;  2CJ7 A;  4XVX A;  3D1I A;  3MXL A;  4Q5C A;  1RP3 A;  1R2J A;  1Y8N A;  1JM6 A;  2UXW A;  1PK0 A;  4X28 C;  1X91 A;  2HJN A;  2YYI A;  3MMO A;  1RX0 A;  3MDE A;  3CRL A;  3SXQ A;  4Q1O A;  1K8T A;  3UBR A;  2YYK A;  3BNH A;  3OWA A;  5M4N A;  2PO4 A;  2A1T A;  2R0M A;  1XFZ A;  2EC5 A;  3D9F A;  3CE2 A;  3BNJ A;  5J6A A;  4MPN A;  2BU2 A;  1GJV A;  1RJ1 A;  1PI1 A;  2FP2 A;  3R7K A;  1GKZ A;  5K3G A;  1Y8O A;  2F6L A;  4L3Y A;  4V26 A;  3S7W A;  4AKI A;  1W07 A;  2C0U A;  2JIF A;  4KCF A;  1BUC A;  1EGC A;  2OEX A;  2VR0 A;  4MP7 A;  2XQR B;  2R05 A;  3L1T A;  1IVH A;  2EBF X;  2Q8F A;  3X29 A;  4HR3 A; 
#chains in the Genus database with same CATH homology
 3HWC A;  3FO3 A;  4U83 A;  2J7A A;  3AFF A;  1EGE A;  3D9G A;  1FS7 A;  1FS9 A;  2E81 A;  4G5E A;  2OT4 A;  3LGQ A;  2RDZ A;  2JBS A;  3M9V A;  4ZYJ A;  4Q17 A;  2REH A;  4M9A A;  1UDY A;  3FCJ A;  4WJY A;  3D9E A;  2Z1Q A;  3UU9 A;  3TTB A;  2IX6 A;  3MKH A;  2OR0 A;  2D29 A;  4Q5B A;  4RM7 A;  1WS9 A;  3BNG A;  4Q0T A;  1EGD A;  3AFE A;  2CX9 A;  4DOY A;  1UKW A;  3MPI A;  4L3Z A;  3PFD A;  4JEK A;  1SIR A;  3X0X A;  2E80 A;  3GM6 A;  2R0N A;  3X0Y A;  4L3X A;  2ZO5 A;  4IRN A;  3F29 A;  3D6B A;  3P4T A;  3OWM A;  4NXL A;  2IX5 A;  2RFQ A;  2YYG A;  1IS2 A;  4O5M A;  3EON A;  3BNF A;  4N5F A;  3SWO A;  2DDH A;  3NF4 A;  3MPJ A;  2RF7 A;  2ZAF A;  2DVL A;  1OAH A;  4L1F A;  3SF6 A;  5K3I A;  3TOR A;  3GQT A;  2JBR A;  3OIB A;  2JBT A;  2EBA A;  3LG1 A;  1U8V A;  4OO2 A;  3SCE A;  4P13 A;  4Q4U A;  2PG0 A;  4KTO A;  2VIG A;  1FS8 A;  2WBI A;  3MDD A;  3GNC A;  4X28 A;  2C12 A;  4ZXV A;  2YYL A;  3D9D A;  2FON A;  4W9U A;  5K3J A;  3B96 A;  1JQI A;  4L38 A;  3EOM A;  4IV6 A;  3RKH A;  1T9G A;  1SIQ A;  5K3H A;  2YYJ A;  1GU6 A;  3II9 A;  2YYM A;  1QDB A;  4XVX A;  3D1I A;  3MXL A;  4Q5C A;  1R2J A;  2YYI A;  2UXW A;  4X28 C;  3SXQ A;  3MMO A;  1RX0 A;  3MDE A;  4Q1O A;  3UBR A;  2YYK A;  3BNH A;  3OWA A;  2A1T A;  2R0M A;  3D9F A;  3BNJ A;  3R7K A;  3S7W A;  5K3G A;  4L3Y A;  1W07 A;  2C0U A;  2JIF A;  4KCF A;  1BUC A;  1EGC A;  2VR0 A;  3L1T A;  1IVH A;  4HR3 A;

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similar chains in the Genus database (?% sequence similarity)

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#similar chains, but unknotted
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2C12A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations