2D29A

Structural study on project id tt0172 from thermus thermophilus hb8
Total Genus 156
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
156
sequence length
386
structure length
386
Chain Sequence
GLWFEEGAEERQVLGPFREFLKAEVAPGAAERDRTGAFPWDLVRKLAEFGVFGALVPEAYGGAGLSTRLFARMVEAIAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQGSVAGVYVVMARTDPPPSPERKHQGISAFAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGERGKGFYDVLRVLDGGRIGIAAMAVGLGQAALDYALAYAKGREAFGRPIAEFEGVSFKLAEAATELEAARLLYLKAAELKDAGRPFTLEAAQAKLFASEAAVKACDEAIQILGGYGYVKDYPVERYWRDARLTRIGEGTSEILKLVIARRLLEAV
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
source organism Thermus thermophilus
publication title Structural study on project ID TT0172 from Thermus thermophilus HB8
rcsb
molecule keywords acyl-CoA dehydrogenase
total genus 156
structure length 386
sequence length 386
chains with identical sequence B
ec nomenclature
pdb deposition date 2005-09-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 2d29A01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 2d29A03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 2d29A02
3LGQA 2YYIA 3MKHA 1JQIA 2ZO5A 3P4TA 3HWCA 2DDHA 1GU6A 3MDEA 3BNHA 4L1FA 2OT4A 4IRNA 4N5FA 1OAHA 1U8VA 3SCEA 2E80A 2RDZA 3D1IA 3L1TA 4HR3A 1RX0A 3D6BA 3NF4A 3PFDA 3UU9A 2R0MA 1T9GA 2JBSA 3SF6A 3F29A 1UDYA 3X0XA 4L3YA 3D9DA 2YYMA 2IX5A 2YYKA 3EONA 2REHA 1FS7A 2ZAFA 4L38A 3AFEA 4DOYA 4Q1OA 2J7AA 4JEKA 1IVHA 2CX9A 4Q0TA 3D9FA 3FCJA 4ZYJA 4Q5BA 4G5EA 3X0YA 2RFQA 2VIGA 2JIFA 3BNJA 3M9VA 3TORA 2C12A 2JBTA 2DVLA 1EGCA 2UXWA 1SIQA 3RKHA 3AFFA 3GNCA 3S7WA 4X28C 5K3JA 1QDBA 1BUCA 1R2JA 2FONA 4Q4UA 4W9UA 2RF7A 4M9AA 4Q5CA 3GM6A 5K3HA 4U83A 4Q17A 4WJYA 4XVXA 3OIBA 1FS9A 2YYJA 3OWAA 4L3XA 3II9A 3BNFA 3OWMA 2OR0A 1EGEA 4P13A 3MMOA 4L3ZA 2VR0A 3D9GA 4RM7A 5K3GA 3TTBA 2A1TA 2E81A 3D9EA 1WS9A 4ZXVA 1FS8A 2R0NA 2D29A 2YYGA 3SXQA 2JBRA 2EBAA 3MPIA 4O5MA 3B96A 2C0UA 3GQTA 3MXLA 4OO2A 3LG1A 3MPJA 3MDDA 2WBIA 3EOMA 5K3IA 2PG0A 1UKWA 1W07A 2Z1QA 3BNGA 3UBRA 1EGDA 2YYLA 4X28A 4NXLA 4KCFA 3FO3A 2IX6A 4KTOA 1IS2A 1SIRA 3R7KA 3SWOA 4IV6A
chains in the Genus database with same CATH superfamily
3D2RA 3LGQA 2YYIA 3MKHA 2R02A 5M4MA 1JQIA 1Y8OA 4V26A 2GBBA 2ZO5A 1PI1A 3P4TA 3Q24A 3HWCA 2DDHA 1GU6A 3MDEA 1LVCA 5M4PA 3BNHA 2QR4A 4L1FA 1Y0VA 4LQSB 2AO2A 2OT4A 1XFXA 2Q8IA 4IRNA 4MP2A 4N5FA 1OAHA 2OJQA 5J6AA 5B5WA 2Q8GA 3DJLA 4E01A 2XQRB 4G97A 4J1VA 4QICA 1U8VA 4HKSA 3SCEA 4H81A 2E80A 2EBHX 2FP1A 2RDZA 3D1IA 5EZ3A 3L1TA 2BU6A 4HR3A 1RX0A 3D6BA 3NF4A 3PFDA 2R05A 2R0MA 1T9GA 2JBSA 3SF6A 2EC5A 3F29A 4MPEA 2Q8FA 4AKIA 1XFWA 1UDYA 3X0XA 2XS8A 4L3YA 4FF4A 3D9DA 3CRKA 2YYMA 2IX5A 2YYKA 3EONA 2ZKJA 2ZDYA 2REHA 1FS7A 2ZAFA 4L38A 3AFEA 3UU9A 1R3BA 4DOYA 5M4NA 4Q1OA 2J7AA 4FZ4A 4JEKA 1IVHA 2CX9A 3KMLA 4Q0TA 2F6LA 3D9FA 3FCJA 4V25A 4ZYJA 4Q5BA 2CJ5A 4G5EA 2OEXA 5GJWE 3TZ0A 3X0YA 1Y8NA 2RFQA 3VKGA 4FF3A 1GKXA 2BU5A 2CJ7A 4KSFA 2VIGA 5J71A 2BU7A 1XG2B 2BU2A 4KS9A 1K90A 3U33A 2JIFA 3BNJA 3M9VA 3TORA 2C12A 2JBTA 4E02A 4AKGA 2DVLA 1EGCA 2UXWA 1SIQA 4MP7A 2Q8HA 3AFFA 3GNCA 3RKHA 3S7WA 2R03A 3VKHA 1XFZA 2YGWA 4X28C 5K3JA 1SC5A 1QDBA 3Q22A 1BUCA 4H7QA 1R2JA 1Y8PA 2PO4A 1XFYA 4FF1A 1GKZA 2FONA 1S26A 4Q4UA 3Q0AA 4W9UA 2RF7A 1PK0A 1RJ4A 4M9AA 4Q5CA 5BRMA 3Q23A 1XFVA 5K3HA 3GM6A 4H85A 4HKRA 3X29A 4U83A 4Q17A 4E00A 2EBFX 4WJYA 4XVXA 1X8ZA 4KSAA 3OIBA 1FS9A 2YYJA 3TZ5A 3OWAA 4L3XA 3II9A 3BNFA 1RP3A 3OWMA 2OR0A 1EGEA 4P13A 3MMOA 1K8TA 4L3ZA 4MPCA 4P79A 2BU8A 2VR0A 3CE2A 2OEVA 5M4KA 2CJ6A 3D9GA 4RM7A 4AKHA 5K3GA 3TTBA 3TZ4A 1X91A 2ZDXA 2A1TA 1JM6A 2E81A 3D9EA 1WS9A 4ZXVA 2E0AA 3C2PA 2CJ4A 1FS8A 2R0NA 2D29A 2YYGA 5B6BA 3C46A 3SXQA 2JBRA 2EBAA 3VADA 2AZEA 3MPIA 4O5MA 3B96A 2C0UA 3GQTA 3MXLA 2BTZA 2HJNA 4MPNA 4AI6A 2XS1A 4OO2A 3LG1A 4JIOA 3MPJA 3MDDA 1GJVA 2WBIA 2PNRA 1XFUA 2LFWA 1K93A 5GJVE 3CRLA 1SK6A 1X90A 3EOMA 1RJ1A 3TZ2A 4JIZA 4DZYA 2CJ8A 5B5VA 2VF1A 5K3IA 5BRKA 2PG0A 1UKWA 2FP2A 1W07A 4F0XA 3N0RA 2Z1QA 3BNGA 4LQQB 3UBRA 1EGDA 2YYLA 3C3LA 4X28A 4NXLA 4FF2A 4KCFA 3FO3A 2IX6A 4KTOA 1IS2A 1SIRA 3R7KA 3SWOA 4IV6A
chains in the Genus database with same CATH topology
3LGQA 2YYIA 3MKHA 1JQIA 2ZO5A 3P4TA 3HWCA 2DDHA 1GU6A 3MDEA 3BNHA 4L1FA 2OT4A 4IRNA 4N5FA 1OAHA 1U8VA 3SCEA 2E80A 2RDZA 3D1IA 3L1TA 4HR3A 1RX0A 3D6BA 3NF4A 3PFDA 3UU9A 2R0MA 1T9GA 2JBSA 3SF6A 3F29A 1UDYA 3X0XA 4L3YA 3D9DA 2YYMA 2IX5A 2YYKA 3EONA 2REHA 1FS7A 2ZAFA 4L38A 3AFEA 4DOYA 4Q1OA 2J7AA 4JEKA 1IVHA 2CX9A 4Q0TA 3D9FA 3FCJA 4ZYJA 4Q5BA 4G5EA 3X0YA 2RFQA 2VIGA 2JIFA 3BNJA 3M9VA 3TORA 2C12A 2JBTA 2DVLA 1EGCA 2UXWA 1SIQA 3RKHA 3AFFA 3GNCA 3S7WA 4X28C 5K3JA 1QDBA 1BUCA 1R2JA 2FONA 4Q4UA 4W9UA 2RF7A 4M9AA 4Q5CA 3GM6A 5K3HA 4U83A 4Q17A 4WJYA 4XVXA 3OIBA 1FS9A 2YYJA 3OWAA 4L3XA 3II9A 3BNFA 3OWMA 2OR0A 1EGEA 4P13A 3MMOA 4L3ZA 2VR0A 3D9GA 4RM7A 5K3GA 3TTBA 2A1TA 2E81A 3D9EA 1WS9A 4ZXVA 1FS8A 2R0NA 2D29A 2YYGA 3SXQA 2JBRA 2EBAA 3MPIA 4O5MA 3B96A 2C0UA 3GQTA 3MXLA 4OO2A 3LG1A 3MPJA 3MDDA 2WBIA 3EOMA 5K3IA 2PG0A 1UKWA 1W07A 2Z1QA 3BNGA 3UBRA 1EGDA 2YYLA 4X28A 4NXLA 4KCFA 3FO3A 2IX6A 4KTOA 1IS2A 1SIRA 3R7KA 3SWOA 4IV6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LGQ A;  2YYI A;  3MKH A;  1JQI A;  2ZO5 A;  3P4T A;  3HWC A;  2DDH A;  1GU6 A;  3MDE A;  3BNH A;  4L1F A;  2OT4 A;  4IRN A;  4N5F A;  1OAH A;  1U8V A;  3SCE A;  2E80 A;  2RDZ A;  3D1I A;  3L1T A;  4HR3 A;  1RX0 A;  3D6B A;  3NF4 A;  3PFD A;  3UU9 A;  2R0M A;  1T9G A;  2JBS A;  3SF6 A;  3F29 A;  1UDY A;  3X0X A;  4L3Y A;  3D9D A;  2YYM A;  2IX5 A;  2YYK A;  3EON A;  2REH A;  1FS7 A;  2ZAF A;  4L38 A;  3AFE A;  4DOY A;  4Q1O A;  2J7A A;  4JEK A;  1IVH A;  2CX9 A;  4Q0T A;  3D9F A;  3FCJ A;  4ZYJ A;  4Q5B A;  4G5E A;  3X0Y A;  2RFQ A;  2VIG A;  2JIF A;  3BNJ A;  3M9V A;  3TOR A;  2C12 A;  2JBT A;  2DVL A;  1EGC A;  2UXW A;  1SIQ A;  3RKH A;  3AFF A;  3GNC A;  3S7W A;  4X28 C;  5K3J A;  1QDB A;  1BUC A;  1R2J A;  2FON A;  4Q4U A;  4W9U A;  2RF7 A;  4M9A A;  4Q5C A;  3GM6 A;  5K3H A;  4U83 A;  4Q17 A;  4WJY A;  4XVX A;  3OIB A;  1FS9 A;  2YYJ A;  3OWA A;  4L3X A;  3II9 A;  3BNF A;  3OWM A;  2OR0 A;  1EGE A;  4P13 A;  3MMO A;  4L3Z A;  2VR0 A;  3D9G A;  4RM7 A;  5K3G A;  3TTB A;  2A1T A;  2E81 A;  3D9E A;  1WS9 A;  4ZXV A;  1FS8 A;  2R0N A;  2D29 A;  2YYG A;  3SXQ A;  2JBR A;  2EBA A;  3MPI A;  4O5M A;  3B96 A;  2C0U A;  3GQT A;  3MXL A;  4OO2 A;  3LG1 A;  3MPJ A;  3MDD A;  2WBI A;  3EOM A;  5K3I A;  2PG0 A;  1UKW A;  1W07 A;  2Z1Q A;  3BNG A;  3UBR A;  1EGD A;  2YYL A;  4X28 A;  4NXL A;  4KCF A;  3FO3 A;  2IX6 A;  4KTO A;  1IS2 A;  1SIR A;  3R7K A;  3SWO A;  4IV6 A; 
#chains in the Genus database with same CATH topology
 3D2R A;  3LGQ A;  2YYI A;  3MKH A;  2R02 A;  5M4M A;  1JQI A;  1Y8O A;  4V26 A;  2GBB A;  2ZO5 A;  1PI1 A;  3P4T A;  3Q24 A;  3HWC A;  2DDH A;  1GU6 A;  3MDE A;  1LVC A;  5M4P A;  3BNH A;  2QR4 A;  4L1F A;  1Y0V A;  4LQS B;  2AO2 A;  2OT4 A;  1XFX A;  2Q8I A;  4IRN A;  4MP2 A;  4N5F A;  1OAH A;  2OJQ A;  5J6A A;  5B5W A;  2Q8G A;  3DJL A;  4E01 A;  2XQR B;  4G97 A;  4J1V A;  4QIC A;  1U8V A;  4HKS A;  3SCE A;  4H81 A;  2E80 A;  2EBH X;  2FP1 A;  2RDZ A;  3D1I A;  5EZ3 A;  3L1T A;  2BU6 A;  4HR3 A;  1RX0 A;  3D6B A;  3NF4 A;  3PFD A;  2R05 A;  2R0M A;  1T9G A;  2JBS A;  3SF6 A;  2EC5 A;  3F29 A;  4MPE A;  2Q8F A;  4AKI A;  1XFW A;  1UDY A;  3X0X A;  2XS8 A;  4L3Y A;  4FF4 A;  3D9D A;  3CRK A;  2YYM A;  2IX5 A;  2YYK A;  3EON A;  2ZKJ A;  2ZDY A;  2REH A;  1FS7 A;  2ZAF A;  4L38 A;  3AFE A;  3UU9 A;  1R3B A;  4DOY A;  5M4N A;  4Q1O A;  2J7A A;  4FZ4 A;  4JEK A;  1IVH A;  2CX9 A;  3KML A;  4Q0T A;  2F6L A;  3D9F A;  3FCJ A;  4V25 A;  4ZYJ A;  4Q5B A;  2CJ5 A;  4G5E A;  2OEX A;  5GJW E;  3TZ0 A;  3X0Y A;  1Y8N A;  2RFQ A;  3VKG A;  4FF3 A;  1GKX A;  2BU5 A;  2CJ7 A;  4KSF A;  2VIG A;  5J71 A;  2BU7 A;  1XG2 B;  2BU2 A;  4KS9 A;  1K90 A;  3U33 A;  2JIF A;  3BNJ A;  3M9V A;  3TOR A;  2C12 A;  2JBT A;  4E02 A;  4AKG A;  2DVL A;  1EGC A;  2UXW A;  1SIQ A;  4MP7 A;  2Q8H A;  3AFF A;  3GNC A;  3RKH A;  3S7W A;  2R03 A;  3VKH A;  1XFZ A;  2YGW A;  4X28 C;  5K3J A;  1SC5 A;  1QDB A;  3Q22 A;  1BUC A;  4H7Q A;  1R2J A;  1Y8P A;  2PO4 A;  1XFY A;  4FF1 A;  1GKZ A;  2FON A;  1S26 A;  4Q4U A;  3Q0A A;  4W9U A;  2RF7 A;  1PK0 A;  1RJ4 A;  4M9A A;  4Q5C A;  5BRM A;  3Q23 A;  1XFV A;  5K3H A;  3GM6 A;  4H85 A;  4HKR A;  3X29 A;  4U83 A;  4Q17 A;  4E00 A;  2EBF X;  4WJY A;  4XVX A;  1X8Z A;  4KSA A;  3OIB A;  1FS9 A;  2YYJ A;  3TZ5 A;  3OWA A;  4L3X A;  3II9 A;  3BNF A;  1RP3 A;  3OWM A;  2OR0 A;  1EGE A;  4P13 A;  3MMO A;  1K8T A;  4L3Z A;  4MPC A;  4P79 A;  2BU8 A;  2VR0 A;  3CE2 A;  2OEV A;  5M4K A;  2CJ6 A;  3D9G A;  4RM7 A;  4AKH A;  5K3G A;  3TTB A;  3TZ4 A;  1X91 A;  2ZDX A;  2A1T A;  1JM6 A;  2E81 A;  3D9E A;  1WS9 A;  4ZXV A;  2E0A A;  3C2P A;  2CJ4 A;  1FS8 A;  2R0N A;  2D29 A;  2YYG A;  5B6B A;  3C46 A;  3SXQ A;  2JBR A;  2EBA A;  3VAD A;  2AZE A;  3MPI A;  4O5M A;  3B96 A;  2C0U A;  3GQT A;  3MXL A;  2BTZ A;  2HJN A;  4MPN A;  4AI6 A;  2XS1 A;  4OO2 A;  3LG1 A;  4JIO A;  3MPJ A;  3MDD A;  1GJV A;  2WBI A;  2PNR A;  1XFU A;  2LFW A;  1K93 A;  5GJV E;  3CRL A;  1SK6 A;  1X90 A;  3EOM A;  1RJ1 A;  3TZ2 A;  4JIZ A;  4DZY A;  2CJ8 A;  5B5V A;  2VF1 A;  5K3I A;  5BRK A;  2PG0 A;  1UKW A;  2FP2 A;  1W07 A;  4F0X A;  3N0R A;  2Z1Q A;  3BNG A;  4LQQ B;  3UBR A;  1EGD A;  2YYL A;  3C3L A;  4X28 A;  4NXL A;  4FF2 A;  4KCF A;  3FO3 A;  2IX6 A;  4KTO A;  1IS2 A;  1SIR A;  3R7K A;  3SWO A;  4IV6 A; 
#chains in the Genus database with same CATH homology
 3LGQ A;  2YYI A;  3MKH A;  1JQI A;  2ZO5 A;  3P4T A;  3HWC A;  2DDH A;  1GU6 A;  3MDE A;  3BNH A;  4L1F A;  2OT4 A;  4IRN A;  4N5F A;  1OAH A;  1U8V A;  3SCE A;  2E80 A;  2RDZ A;  3D1I A;  3L1T A;  4HR3 A;  1RX0 A;  3D6B A;  3NF4 A;  3PFD A;  3UU9 A;  2R0M A;  1T9G A;  2JBS A;  3SF6 A;  3F29 A;  1UDY A;  3X0X A;  4L3Y A;  3D9D A;  2YYM A;  2IX5 A;  2YYK A;  3EON A;  2REH A;  1FS7 A;  2ZAF A;  4L38 A;  3AFE A;  4DOY A;  4Q1O A;  2J7A A;  4JEK A;  1IVH A;  2CX9 A;  4Q0T A;  3D9F A;  3FCJ A;  4ZYJ A;  4Q5B A;  4G5E A;  3X0Y A;  2RFQ A;  2VIG A;  2JIF A;  3BNJ A;  3M9V A;  3TOR A;  2C12 A;  2JBT A;  2DVL A;  1EGC A;  2UXW A;  1SIQ A;  3RKH A;  3AFF A;  3GNC A;  3S7W A;  4X28 C;  5K3J A;  1QDB A;  1BUC A;  1R2J A;  2FON A;  4Q4U A;  4W9U A;  2RF7 A;  4M9A A;  4Q5C A;  3GM6 A;  5K3H A;  4U83 A;  4Q17 A;  4WJY A;  4XVX A;  3OIB A;  1FS9 A;  2YYJ A;  3OWA A;  4L3X A;  3II9 A;  3BNF A;  3OWM A;  2OR0 A;  1EGE A;  4P13 A;  3MMO A;  4L3Z A;  2VR0 A;  3D9G A;  4RM7 A;  5K3G A;  3TTB A;  2A1T A;  2E81 A;  3D9E A;  1WS9 A;  4ZXV A;  1FS8 A;  2R0N A;  2D29 A;  2YYG A;  3SXQ A;  2JBR A;  2EBA A;  3MPI A;  4O5M A;  3B96 A;  2C0U A;  3GQT A;  3MXL A;  4OO2 A;  3LG1 A;  3MPJ A;  3MDD A;  2WBI A;  3EOM A;  5K3I A;  2PG0 A;  1UKW A;  1W07 A;  2Z1Q A;  3BNG A;  3UBR A;  1EGD A;  2YYL A;  4X28 A;  4NXL A;  4KCF A;  3FO3 A;  2IX6 A;  4KTO A;  1IS2 A;  1SIR A;  3R7K A;  3SWO A;  4IV6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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