2IX6A

Short chain specific acyl-coa oxidase from arabidopsis thaliana, acx4
Total Genus 141
50100150200250300350400020406080100120140
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
141
sequence length
416
structure length
416
Chain Sequence
KSSYFDLPPMEMSVAFPQATPASTFPPCTSDYYHFNDLLTPEEQAIRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIKGYGCPGLSITANAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTTTNQINGFIVKKDAPGLKATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGIYDMCHRYLKERKQFGAPLAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLYETGQMTPGQASLGKAWISSKARETASLGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINTLVTGREVTGIASFKPAT
50100150200250300350400400300200100
020406080100120140Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH9 (358-383)TI2 (20-23)3H5 (320-322)AH1 (28-31)TIV2 (44-47)TI3 (32-35)TIV1 (37-40)TVIII1 (38-41)TIV3 (45-48)TI'1 (107-110)3H1 (52-54)TI4 (47-50)AH2 (57-84)3H6 (384-388)S5 (226-233)TII4 (236-239)3H2 (89-91)EMPTYAH3 (92-98)AH5 (130-150)AH8 (324-353)TIV4 (100-103)3H7 (390-392)AH4 (115-128)S2 (189-193)AH6 (153-165)S7 (255-266)S4 (214-221)TI9 (250-253)TVIII2 (166-169)S3 (196-207)S1 (170-173)3H3 (183-185)TIV5 (179-182)TI5 (176-179)TIV8 (248-251)S6 (239-243)TII1 (193-196)TIV7 (209-212)TI6 (208-211)TVIII4 (212-215)TI7 (221-224)TII3 (233-236)TI10 (266-269)TI12 (271-274)S8 (270-271)TIV10 (274-277)3H4 (277-280)AH7 (281-312)TIV11 (314-317)S10 (318-319)O1 (392-394)TIV12 (406-409)AH11 (411-423)TII'1 (102-105)TVIII3 (177-180)S9 (314-315)AH10 (394-406)TI1 (18-21)TII2 (206-209)Updating...
connected with : NaN
molecule tags Oxidoreductase
source organism Arabidopsis thaliana
publication title Controlling Electron Transfer in Acyl-Coa Oxidases and Dehydrogenases: A Structural View.
pubmed doi rcsb
molecule keywords ACYL-COENZYME A OXIDASE 4, PEROXISOMAL
total genus 141
structure length 416
sequence length 416
chains with identical sequence B, C, D, E, F
ec nomenclature ec 1.3.3.6: Acyl-CoA oxidase.
pdb deposition date 2006-07-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 2ix6A01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 2ix6A03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 2ix6A02
3R7KA 2YYKA 3EOMA 1EGCA 4NXLA 3GNCA 3BNGA 3D9FA 4IRNA 4M9AA 1IS2A 3AFEA 3OWAA 1EGEA 4L3XA 2EBAA 2WBIA 3X0YA 3D1IA 3MMOA 4IV6A 3SF6A 2RFQA 3LG1A 3TORA 3MPIA 2E80A 4DOYA 4Q17A 4KTOA 3MDDA 4N5FA 3MPJA 3BNJA 2D29A 3FCJA 4U83A 3M9VA 2J7AA 2RDZA 2YYIA 3MDEA 1UDYA 2ZAFA 3UU9A 3D9DA 5K3GA 3UBRA 3F29A 2ZO5A 3MKHA 2R0NA 3D6BA 1FS9A 2OT4A 1T9GA 4Q5BA 4Q4UA 1SIQA 4W9UA 2UXWA 3PFDA 2JBRA 2IX5A 4XVXA 1GU6A 1BUCA 3X0XA 2JBSA 2VIGA 2FONA 2JBTA 3MXLA 4OO2A 3HWCA 4Q1OA 4L3YA 1RX0A 3FO3A 4KCFA 1JQIA 1W07A 3GQTA 4Q5CA 3D9GA 1OAHA 3S7WA 2YYLA 2VR0A 3NF4A 2CX9A 3SXQA 3P4TA 2YYJA 3L1TA 3SCEA 5K3HA 3D9EA 4ZXVA 3BNHA 2DDHA 2REHA 3SWOA 4RM7A 2IX6A 2RF7A 2YYGA 2C12A 1QDBA 3GM6A 5K3IA 2YYMA 5K3JA 2PG0A 4G5EA 4L3ZA 1IVHA 3LGQA 3BNFA 3RKHA 2DVLA 3II9A 3OIBA 1U8VA 2E81A 4JEKA 1UKWA 4X28A 2JIFA 4O5MA 4L38A 1SIRA 4L1FA 2OR0A 4HR3A 4ZYJA 4Q0TA 3B96A 4X28C 2Z1QA 2A1TA 1FS8A 3EONA 3TTBA 1R2JA 4WJYA 3OWMA 4P13A 2C0UA 2R0MA 3AFFA 1WS9A 1EGDA 1FS7A
chains in the Genus database with same CATH superfamily
2BU8A 3R7KA 2EBFX 2YYKA 3EOMA 1EGCA 3TZ0A 4NXLA 2LFWA 1GKZA 3GNCA 2BTZA 4JIOA 2EBHX 5J71A 2F6LA 3BNGA 3Q0AA 3D9FA 4IRNA 4M9AA 2XQRB 4MP7A 3Q22A 1IS2A 1XFUA 2R02A 2AO2A 3AFEA 5BRMA 3OWAA 2BU6A 1EGEA 4L3XA 2EBAA 4QICA 2WBIA 4FF4A 2GBBA 3X0YA 3D1IA 3D2RA 3MMOA 4IV6A 3CE2A 1Y8PA 3SF6A 2RFQA 4FF3A 3LG1A 3TORA 3MPIA 2E80A 4DOYA 4Q17A 4KTOA 2BU5A 3MDDA 3C46A 4N5FA 3MPJA 1GJVA 4MPCA 3BNJA 2D29A 3FCJA 4U83A 3M9VA 1XG2B 2J7AA 1RJ1A 1X8ZA 2RDZA 4H81A 5GJWE 2CJ8A 2YYIA 3MDEA 1UDYA 2OJQA 5B5WA 3X29A 2ZAFA 3UU9A 1K90A 3DJLA 3D9DA 2HJNA 5K3GA 3UBRA 4KS9A 2PO4A 3Q23A 3F29A 1SK6A 2ZO5A 3MKHA 2R0NA 4J1VA 3D6BA 1FS9A 2OT4A 1T9GA 2Q8GA 2XS8A 4Q5BA 4Q4UA 1X91A 2FP1A 1SIQA 2AZEA 4H85A 4MPNA 4W9UA 2UXWA 3PFDA 2JBRA 2IX5A 4XVXA 1Y8NA 4FZ4A 4KSAA 1GU6A 1BUCA 2OEVA 3C3LA 3X0XA 3CRKA 5B6BA 2JBSA 2VIGA 2FONA 1XFVA 2JBTA 1Y8OA 3MXLA 4OO2A 3HWCA 1K8TA 4Q1OA 3TZ4A 4AKHA 1RJ4A 4H7QA 4L3YA 5GJVE 2BU7A 1RX0A 2CJ6A 1XFXA 4E01A 2OEXA 4KCFA 3FO3A 1JQIA 1W07A 5M4PA 4FF1A 3VKHA 3GQTA 2CJ5A 4G97A 2XS1A 4MPEA 4P79A 4Q5CA 3D9GA 1OAHA 2E0AA 3S7WA 4V26A 2YYLA 2ZKJA 2R03A 4FF2A 4AKIA 1R3BA 1XFYA 2VR0A 3NF4A 4HKSA 3VADA 2Q8IA 2CX9A 4LQSB 3SXQA 3P4TA 1X90A 2ZDXA 5EZ3A 2YYJA 3L1TA 3SCEA 3Q24A 2EC5A 5K3HA 3D9EA 2Q8FA 4ZXVA 3BNHA 2DDHA 2REHA 2ZDYA 3SWOA 4RM7A 2FP2A 4AKGA 3U33A 2IX6A 5M4KA 1S26A 2RF7A 2YYGA 2C12A 2QR4A 1QDBA 2PNRA 3GM6A 3N0RA 5K3IA 4KSFA 1K93A 2YYMA 5K3JA 2PG0A 4E00A 4G5EA 4L3ZA 1LVCA 5BRKA 1IVHA 3LGQA 5J6AA 5M4MA 3BNFA 1SC5A 1XFZA 4V25A 3RKHA 2DVLA 3II9A 3C2PA 3VKGA 1JM6A 3OIBA 1GKXA 2CJ4A 4JIZA 1PK0A 1PI1A 1U8VA 2E81A 4JEKA 1UKWA 1XFWA 4X28A 3KMLA 2JIFA 3TZ2A 4O5MA 4L38A 1SIRA 4L1FA 4AI6A 3TZ5A 2OR0A 4HR3A 4ZYJA 4Q0TA 3B96A 1Y0VA 4DZYA 4X28C 2Z1QA 2A1TA 1FS8A 2VF1A 3EONA 2YGWA 3TTBA 4F0XA 1R2JA 4WJYA 4LQQB 3OWMA 2CJ7A 3CRLA 5M4NA 4HKRA 4MP2A 2BU2A 1RP3A 4P13A 2Q8HA 2C0UA 4E02A 2R0MA 3AFFA 1WS9A 1EGDA 1FS7A 5B5VA 2R05A
chains in the Genus database with same CATH topology
3R7KA 2YYKA 3EOMA 1EGCA 4NXLA 3GNCA 3BNGA 3D9FA 4IRNA 4M9AA 1IS2A 3AFEA 3OWAA 1EGEA 4L3XA 2EBAA 2WBIA 3X0YA 3D1IA 3MMOA 4IV6A 3SF6A 2RFQA 3LG1A 3TORA 3MPIA 2E80A 4DOYA 4Q17A 4KTOA 3MDDA 4N5FA 3MPJA 3BNJA 2D29A 3FCJA 4U83A 3M9VA 2J7AA 2RDZA 2YYIA 3MDEA 1UDYA 2ZAFA 3UU9A 3D9DA 5K3GA 3UBRA 3F29A 2ZO5A 3MKHA 2R0NA 3D6BA 1FS9A 2OT4A 1T9GA 4Q5BA 4Q4UA 1SIQA 4W9UA 2UXWA 3PFDA 2JBRA 2IX5A 4XVXA 1GU6A 1BUCA 3X0XA 2JBSA 2VIGA 2FONA 2JBTA 3MXLA 4OO2A 3HWCA 4Q1OA 4L3YA 1RX0A 3FO3A 4KCFA 1JQIA 1W07A 3GQTA 4Q5CA 3D9GA 1OAHA 3S7WA 2YYLA 2VR0A 3NF4A 2CX9A 3SXQA 3P4TA 2YYJA 3L1TA 3SCEA 5K3HA 3D9EA 4ZXVA 3BNHA 2DDHA 2REHA 3SWOA 4RM7A 2IX6A 2RF7A 2YYGA 2C12A 1QDBA 3GM6A 5K3IA 2YYMA 5K3JA 2PG0A 4G5EA 4L3ZA 1IVHA 3LGQA 3BNFA 3RKHA 2DVLA 3II9A 3OIBA 1U8VA 2E81A 4JEKA 1UKWA 4X28A 2JIFA 4O5MA 4L38A 1SIRA 4L1FA 2OR0A 4HR3A 4ZYJA 4Q0TA 3B96A 4X28C 2Z1QA 2A1TA 1FS8A 3EONA 3TTBA 1R2JA 4WJYA 3OWMA 4P13A 2C0UA 2R0MA 3AFFA 1WS9A 1EGDA 1FS7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3R7K A;  2YYK A;  3EOM A;  1EGC A;  4NXL A;  3GNC A;  3BNG A;  3D9F A;  4IRN A;  4M9A A;  1IS2 A;  3AFE A;  3OWA A;  1EGE A;  4L3X A;  2EBA A;  2WBI A;  3X0Y A;  3D1I A;  3MMO A;  4IV6 A;  3SF6 A;  2RFQ A;  3LG1 A;  3TOR A;  3MPI A;  2E80 A;  4DOY A;  4Q17 A;  4KTO A;  3MDD A;  4N5F A;  3MPJ A;  3BNJ A;  2D29 A;  3FCJ A;  4U83 A;  3M9V A;  2J7A A;  2RDZ A;  2YYI A;  3MDE A;  1UDY A;  2ZAF A;  3UU9 A;  3D9D A;  5K3G A;  3UBR A;  3F29 A;  2ZO5 A;  3MKH A;  2R0N A;  3D6B A;  1FS9 A;  2OT4 A;  1T9G A;  4Q5B A;  4Q4U A;  1SIQ A;  4W9U A;  2UXW A;  3PFD A;  2JBR A;  2IX5 A;  4XVX A;  1GU6 A;  1BUC A;  3X0X A;  2JBS A;  2VIG A;  2FON A;  2JBT A;  3MXL A;  4OO2 A;  3HWC A;  4Q1O A;  4L3Y A;  1RX0 A;  3FO3 A;  4KCF A;  1JQI A;  1W07 A;  3GQT A;  4Q5C A;  3D9G A;  1OAH A;  3S7W A;  2YYL A;  2VR0 A;  3NF4 A;  2CX9 A;  3SXQ A;  3P4T A;  2YYJ A;  3L1T A;  3SCE A;  5K3H A;  3D9E A;  4ZXV A;  3BNH A;  2DDH A;  2REH A;  3SWO A;  4RM7 A;  2IX6 A;  2RF7 A;  2YYG A;  2C12 A;  1QDB A;  3GM6 A;  5K3I A;  2YYM A;  5K3J A;  2PG0 A;  4G5E A;  4L3Z A;  1IVH A;  3LGQ A;  3BNF A;  3RKH A;  2DVL A;  3II9 A;  3OIB A;  1U8V A;  2E81 A;  4JEK A;  1UKW A;  4X28 A;  2JIF A;  4O5M A;  4L38 A;  1SIR A;  4L1F A;  2OR0 A;  4HR3 A;  4ZYJ A;  4Q0T A;  3B96 A;  4X28 C;  2Z1Q A;  2A1T A;  1FS8 A;  3EON A;  3TTB A;  1R2J A;  4WJY A;  3OWM A;  4P13 A;  2C0U A;  2R0M A;  3AFF A;  1WS9 A;  1EGD A;  1FS7 A; 
#chains in the Genus database with same CATH topology
 2BU8 A;  3R7K A;  2EBF X;  2YYK A;  3EOM A;  1EGC A;  3TZ0 A;  4NXL A;  2LFW A;  1GKZ A;  3GNC A;  2BTZ A;  4JIO A;  2EBH X;  5J71 A;  2F6L A;  3BNG A;  3Q0A A;  3D9F A;  4IRN A;  4M9A A;  2XQR B;  4MP7 A;  3Q22 A;  1IS2 A;  1XFU A;  2R02 A;  2AO2 A;  3AFE A;  5BRM A;  3OWA A;  2BU6 A;  1EGE A;  4L3X A;  2EBA A;  4QIC A;  2WBI A;  4FF4 A;  2GBB A;  3X0Y A;  3D1I A;  3D2R A;  3MMO A;  4IV6 A;  3CE2 A;  1Y8P A;  3SF6 A;  2RFQ A;  4FF3 A;  3LG1 A;  3TOR A;  3MPI A;  2E80 A;  4DOY A;  4Q17 A;  4KTO A;  2BU5 A;  3MDD A;  3C46 A;  4N5F A;  3MPJ A;  1GJV A;  4MPC A;  3BNJ A;  2D29 A;  3FCJ A;  4U83 A;  3M9V A;  1XG2 B;  2J7A A;  1RJ1 A;  1X8Z A;  2RDZ A;  4H81 A;  5GJW E;  2CJ8 A;  2YYI A;  3MDE A;  1UDY A;  2OJQ A;  5B5W A;  3X29 A;  2ZAF A;  3UU9 A;  1K90 A;  3DJL A;  3D9D A;  2HJN A;  5K3G A;  3UBR A;  4KS9 A;  2PO4 A;  3Q23 A;  3F29 A;  1SK6 A;  2ZO5 A;  3MKH A;  2R0N A;  4J1V A;  3D6B A;  1FS9 A;  2OT4 A;  1T9G A;  2Q8G A;  2XS8 A;  4Q5B A;  4Q4U A;  1X91 A;  2FP1 A;  1SIQ A;  2AZE A;  4H85 A;  4MPN A;  4W9U A;  2UXW A;  3PFD A;  2JBR A;  2IX5 A;  4XVX A;  1Y8N A;  4FZ4 A;  4KSA A;  1GU6 A;  1BUC A;  2OEV A;  3C3L A;  3X0X A;  3CRK A;  5B6B A;  2JBS A;  2VIG A;  2FON A;  1XFV A;  2JBT A;  1Y8O A;  3MXL A;  4OO2 A;  3HWC A;  1K8T A;  4Q1O A;  3TZ4 A;  4AKH A;  1RJ4 A;  4H7Q A;  4L3Y A;  5GJV E;  2BU7 A;  1RX0 A;  2CJ6 A;  1XFX A;  4E01 A;  2OEX A;  4KCF A;  3FO3 A;  1JQI A;  1W07 A;  5M4P A;  4FF1 A;  3VKH A;  3GQT A;  2CJ5 A;  4G97 A;  2XS1 A;  4MPE A;  4P79 A;  4Q5C A;  3D9G A;  1OAH A;  2E0A A;  3S7W A;  4V26 A;  2YYL A;  2ZKJ A;  2R03 A;  4FF2 A;  4AKI A;  1R3B A;  1XFY A;  2VR0 A;  3NF4 A;  4HKS A;  3VAD A;  2Q8I A;  2CX9 A;  4LQS B;  3SXQ A;  3P4T A;  1X90 A;  2ZDX A;  5EZ3 A;  2YYJ A;  3L1T A;  3SCE A;  3Q24 A;  2EC5 A;  5K3H A;  3D9E A;  2Q8F A;  4ZXV A;  3BNH A;  2DDH A;  2REH A;  2ZDY A;  3SWO A;  4RM7 A;  2FP2 A;  4AKG A;  3U33 A;  2IX6 A;  5M4K A;  1S26 A;  2RF7 A;  2YYG A;  2C12 A;  2QR4 A;  1QDB A;  2PNR A;  3GM6 A;  3N0R A;  5K3I A;  4KSF A;  1K93 A;  2YYM A;  5K3J A;  2PG0 A;  4E00 A;  4G5E A;  4L3Z A;  1LVC A;  5BRK A;  1IVH A;  3LGQ A;  5J6A A;  5M4M A;  3BNF A;  1SC5 A;  1XFZ A;  4V25 A;  3RKH A;  2DVL A;  3II9 A;  3C2P A;  3VKG A;  1JM6 A;  3OIB A;  1GKX A;  2CJ4 A;  4JIZ A;  1PK0 A;  1PI1 A;  1U8V A;  2E81 A;  4JEK A;  1UKW A;  1XFW A;  4X28 A;  3KML A;  2JIF A;  3TZ2 A;  4O5M A;  4L38 A;  1SIR A;  4L1F A;  4AI6 A;  3TZ5 A;  2OR0 A;  4HR3 A;  4ZYJ A;  4Q0T A;  3B96 A;  1Y0V A;  4DZY A;  4X28 C;  2Z1Q A;  2A1T A;  1FS8 A;  2VF1 A;  3EON A;  2YGW A;  3TTB A;  4F0X A;  1R2J A;  4WJY A;  4LQQ B;  3OWM A;  2CJ7 A;  3CRL A;  5M4N A;  4HKR A;  4MP2 A;  2BU2 A;  1RP3 A;  4P13 A;  2Q8H A;  2C0U A;  4E02 A;  2R0M A;  3AFF A;  1WS9 A;  1EGD A;  1FS7 A;  5B5V A;  2R05 A; 
#chains in the Genus database with same CATH homology
 3R7K A;  2YYK A;  3EOM A;  1EGC A;  4NXL A;  3GNC A;  3BNG A;  3D9F A;  4IRN A;  4M9A A;  1IS2 A;  3AFE A;  3OWA A;  1EGE A;  4L3X A;  2EBA A;  2WBI A;  3X0Y A;  3D1I A;  3MMO A;  4IV6 A;  3SF6 A;  2RFQ A;  3LG1 A;  3TOR A;  3MPI A;  2E80 A;  4DOY A;  4Q17 A;  4KTO A;  3MDD A;  4N5F A;  3MPJ A;  3BNJ A;  2D29 A;  3FCJ A;  4U83 A;  3M9V A;  2J7A A;  2RDZ A;  2YYI A;  3MDE A;  1UDY A;  2ZAF A;  3UU9 A;  3D9D A;  5K3G A;  3UBR A;  3F29 A;  2ZO5 A;  3MKH A;  2R0N A;  3D6B A;  1FS9 A;  2OT4 A;  1T9G A;  4Q5B A;  4Q4U A;  1SIQ A;  4W9U A;  2UXW A;  3PFD A;  2JBR A;  2IX5 A;  4XVX A;  1GU6 A;  1BUC A;  3X0X A;  2JBS A;  2VIG A;  2FON A;  2JBT A;  3MXL A;  4OO2 A;  3HWC A;  4Q1O A;  4L3Y A;  1RX0 A;  3FO3 A;  4KCF A;  1JQI A;  1W07 A;  3GQT A;  4Q5C A;  3D9G A;  1OAH A;  3S7W A;  2YYL A;  2VR0 A;  3NF4 A;  2CX9 A;  3SXQ A;  3P4T A;  2YYJ A;  3L1T A;  3SCE A;  5K3H A;  3D9E A;  4ZXV A;  3BNH A;  2DDH A;  2REH A;  3SWO A;  4RM7 A;  2IX6 A;  2RF7 A;  2YYG A;  2C12 A;  1QDB A;  3GM6 A;  5K3I A;  2YYM A;  5K3J A;  2PG0 A;  4G5E A;  4L3Z A;  1IVH A;  3LGQ A;  3BNF A;  3RKH A;  2DVL A;  3II9 A;  3OIB A;  1U8V A;  2E81 A;  4JEK A;  1UKW A;  4X28 A;  2JIF A;  4O5M A;  4L38 A;  1SIR A;  4L1F A;  2OR0 A;  4HR3 A;  4ZYJ A;  4Q0T A;  3B96 A;  4X28 C;  2Z1Q A;  2A1T A;  1FS8 A;  3EON A;  3TTB A;  1R2J A;  4WJY A;  3OWM A;  4P13 A;  2C0U A;  2R0M A;  3AFF A;  1WS9 A;  1EGD A;  1FS7 A; 
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