2JIF | Genus

Total Genus 145

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	145
sequence length	381
structure length	381
Chain Sequence	APLQTFTDEEMMIKSSVKKFAQEQIAPLVSTMDENSKMEKSVIQGLFQQGLMGIEVDPEYGGTGASFLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTTEKVGSFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSAEHAGLFLVMANVDPTIGYKGITSFLVDRDTPGLHIGKPENKLGLRASSTCPLTFENVKVPEANILGQIGHGYKYAIGSLNEGRIGIAAQMLGLAQGCFDYTIPYIKERIQFGKRLFDFQGLQHQVAHVATQLEAARLLTYNAARLLEAGKPFIKEASMAKYYASEIAGQTTSKCIEWMGGVGYTKDYPVEKYFRDAKIGTIYEGASNIQLNTIAKHIDAEY

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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Viewer cachePut cache://localLOAD_/file/5cfd4520712f60aed1d2eabe/pdb.gz

Viewer cachePut https://genus.fuw.edu.pl/file/5cfd4520712f60aed1d2eabe/pdb.gz

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Oxidoreductase
source organism	Homo sapiens
publication title	Crystal Structure of Human Short-Branched Chain Acyl-Coa Dehydrogenase rcsb
molecule keywords	SHORT/BRANCHED CHAIN SPECIFIC ACYL-COA DEHYDROGENASE
total genus	145
structure length	381
sequence length	381
chains with identical sequence	B, C, D
ec nomenclature	ec 1.3.8.5: 2-methyl-branched-chain-enoyl-CoA reductase.
pdb deposition date	2007-02-28

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00441	Acyl-CoA_dh_1	Acyl-CoA dehydrogenase, C-terminal domain
A	PF02770	Acyl-CoA_dh_M	Acyl-CoA dehydrogenase, middle domain
A	PF02771	Acyl-CoA_dh_N	Acyl-CoA dehydrogenase, N-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.540.10	Mainly Alpha	Orthogonal Bundle	Butyryl-Coa Dehydrogenase, subunit A; domain 1	Acyl-CoA dehydrogenase/oxidase, N-terminal domain	2jifA01
1.20.140.10	Mainly Alpha	Up-down Bundle	Butyryl-CoA Dehydrogenase, subunit A; domain 3	Butyryl-CoA Dehydrogenase, subunit A, domain 3	2jifA03
2.40.110.10	Mainly Beta	Beta Barrel	Butyryl-CoA Dehydrogenase, subunit A; domain 2	Butyryl-CoA Dehydrogenase, subunit A, domain 2	2jifA02

4KTOA 3D9FA 2J7AA 1GU6A 4KCFA 3MDEA 4IV6A 4W9UA 1SIQA 4L3ZA 4L38A 1UDYA 3GQTA 4Q1OA 2YYKA 3R7KA 4WJYA 2R0NA 4IRNA 3L1TA 1FS9A 3SWOA 2E81A 3D9EA 5K3JA 2Z1QA 2OT4A 2C0UA 4P13A 3X0YA 3HWCA 1UKWA 3MPIA 4Q0TA 3D1IA 2VIGA 2OR0A 2VR0A 3II9A 3EONA 1IVHA 3D9DA 4Q17A 2YYGA 3TORA 3OWMA 1EGDA 3BNHA 1R2JA 2UXWA 2YYLA 4Q5BA 4Q5CA 1T9GA 1FS7A 3M9VA 2CX9A 2JBTA 1RX0A 3GM6A 2EBAA 3TTBA 3BNFA 4O5MA 3MXLA 3NF4A 3S7WA 3UBRA 4HR3A 2C12A 3OIBA 2JBRA 2WBIA 1FS8A 4L1FA 3SF6A 1IS2A 3FCJA 5K3IA 3EOMA 1SIRA 4L3YA 2E80A 4RM7A 4ZYJA 3SCEA 3MDDA 3GNCA 3UU9A 3X0XA 2DVLA 4N5FA 2YYJA 4DOYA 4Q4UA 2IX6A 4X28C 2RDZA 3FO3A 3MPJA 3AFFA 5K3HA 3LG1A 4U83A 2YYMA 3F29A 2RF7A 4ZXVA 3P4TA 1EGEA 2ZAFA 3AFEA 2JBSA 3RKHA 1BUCA 3PFDA 3MMOA 3SXQA 4M9AA 3BNGA 3OWAA 4JEKA 4OO2A 2REHA 1EGCA 2JIFA 4NXLA 1OAHA 4XVXA 3MKHA 1WS9A 3D9GA 3BNJA 2D29A 2DDHA 1QDBA 4G5EA 2YYIA 2RFQA 5K3GA 1JQIA 2R0MA 4L3XA 1W07A 2A1TA 2ZO5A 3D6BA 3B96A 2FONA 4X28A 1U8VA 3LGQA 2PG0A 2IX5A
chains in the Genus database with same CATH superfamily

2EBFX 2XS1A 4J1VA 4KTOA 4KS9A 3D9FA 2CJ5A 2J7AA 1RJ1A 1GU6A 4KCFA 2PNRA 3MDEA 4DZYA 2LFWA 4IV6A 2EBHX 2XS8A 1XFVA 4W9UA 1RJ4A 3TZ2A 1SIQA 1K8TA 4V26A 1S26A 2R03A 4L3ZA 4KSAA 2AO2A 4L38A 1UDYA 3GQTA 2CJ4A 4Q1OA 2YYKA 3R7KA 4WJYA 1XG2B 5J6AA 2R0NA 2FP2A 4HKRA 4IRNA 1XFXA 3CRKA 1PI1A 2BU8A 3L1TA 4MPNA 4V25A 1FS9A 2VF1A 3SWOA 2BU5A 3D9EA 5K3JA 2E81A 2Z1QA 2OT4A 1Y8OA 2C0UA 4P13A 3X0YA 2QR4A 1UKWA 3MPIA 3HWCA 1GJVA 4MPEA 4Q0TA 2ZKJA 3D1IA 2Q8FA 2VIGA 3Q23A 5M4KA 3DJLA 2OR0A 2VR0A 3II9A 4FF2A 1RP3A 3EONA 1IVHA 3D9DA 1GKXA 2HJNA 4Q17A 2Q8HA 1K93A 2BU6A 2YYGA 3Q24A 3C2PA 4H85A 2EC5A 3TORA 3OWMA 1EGDA 2BTZA 3BNHA 1R2JA 4MP7A 2UXWA 2YYLA 4Q5BA 4MP2A 3KMLA 4Q5CA 3TZ5A 1T9GA 1FS7A 3M9VA 1Y8NA 2CX9A 4AKGA 2JBTA 1RX0A 3GM6A 3U33A 2EBAA 3TTBA 2GBBA 1JM6A 1LVCA 4O5MA 3BNFA 4H7QA 2OEXA 4LQQB 4MPCA 5M4NA 3MXLA 3NF4A 2Q8GA 2AZEA 1XFYA 3S7WA 3UBRA 4AKIA 4HR3A 4JIOA 2C12A 1XFUA 3CE2A 3OIBA 2JBRA 2WBIA 1FS8A 4AI6A 4L1FA 2R05A 1PK0A 3SF6A 5M4PA 1IS2A 3FCJA 4E02A 5K3IA 3EOMA 1SIRA 1K90A 3C3LA 4L3YA 2E80A 4P79A 4RM7A 3CRLA 4ZYJA 5J71A 3SCEA 3MDDA 3GNCA 3N0RA 3Q0AA 2ZDYA 4FF3A 3UU9A 1Y0VA 3X0XA 2DVLA 4N5FA 2YYJA 3Q22A 4DOYA 4Q4UA 2IX6A 4X28C 2RDZA 3FO3A 3MPJA 3AFFA 5K3HA 3LG1A 4U83A 2YYMA 5B5VA 3F29A 4G97A 2RF7A 4ZXVA 3P4TA 5BRMA 1EGEA 4F0XA 2ZAFA 2CJ6A 2OJQA 3AFEA 1X90A 2BU7A 2JBSA 3RKHA 4HKSA 3TZ0A 5B5WA 1BUCA 3PFDA 3MMOA 1XFWA 2PO4A 3SXQA 2FP1A 4M9AA 2OEVA 1X91A 3BNGA 4E01A 3C46A 3OWAA 4JEKA 5M4MA 4OO2A 2REHA 1EGCA 2JIFA 4NXLA 1OAHA 1X8ZA 1XFZA 5GJWE 3VKHA 4XVXA 3MKHA 1WS9A 2CJ8A 3D9GA 3X29A 4AKHA 5B6BA 1Y8PA 3BNJA 3VADA 2D29A 2DDHA 1QDBA 4G5EA 1SK6A 4FF4A 2CJ7A 2XQRB 5EZ3A 3TZ4A 4QICA 2YYIA 2RFQA 4E00A 4KSFA 5K3GA 4LQSB 1JQIA 4FF1A 3VKGA 2R0MA 4L3XA 1W07A 2A1TA 5GJVE 2ZO5A 3D6BA 3D2RA 4FZ4A 3B96A 2FONA 4H81A 2ZDXA 2R02A 1SC5A 4JIZA 1R3BA 4X28A 1U8VA 1GKZA 2F6LA 3LGQA 2BU2A 2YGWA 2E0AA 2Q8IA 5BRKA 2PG0A 2IX5A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4KTO A;  3D9F A;  2J7A A;  1GU6 A;  4KCF A;  3MDE A;  4IV6 A;  4W9U A;  1SIQ A;  4L3Z A;  4L38 A;  1UDY A;  3GQT A;  4Q1O A;  2YYK A;  3R7K A;  4WJY A;  2R0N A;  4IRN A;  3L1T A;  1FS9 A;  3SWO A;  2E81 A;  3D9E A;  5K3J A;  2Z1Q A;  2OT4 A;  2C0U A;  4P13 A;  3X0Y A;  3HWC A;  1UKW A;  3MPI A;  4Q0T A;  3D1I A;  2VIG A;  2OR0 A;  2VR0 A;  3II9 A;  3EON A;  1IVH A;  3D9D A;  4Q17 A;  2YYG A;  3TOR A;  3OWM A;  1EGD A;  3BNH A;  1R2J A;  2UXW A;  2YYL A;  4Q5B A;  4Q5C A;  1T9G A;  1FS7 A;  3M9V A;  2CX9 A;  2JBT A;  1RX0 A;  3GM6 A;  2EBA A;  3TTB A;  3BNF A;  4O5M A;  3MXL A;  3NF4 A;  3S7W A;  3UBR A;  4HR3 A;  2C12 A;  3OIB A;  2JBR A;  2WBI A;  1FS8 A;  4L1F A;  3SF6 A;  1IS2 A;  3FCJ A;  5K3I A;  3EOM A;  1SIR A;  4L3Y A;  2E80 A;  4RM7 A;  4ZYJ A;  3SCE A;  3MDD A;  3GNC A;  3UU9 A;  3X0X A;  2DVL A;  4N5F A;  2YYJ A;  4DOY A;  4Q4U A;  2IX6 A;  4X28 C;  2RDZ A;  3FO3 A;  3MPJ A;  3AFF A;  5K3H A;  3LG1 A;  4U83 A;  2YYM A;  3F29 A;  2RF7 A;  4ZXV A;  3P4T A;  1EGE A;  2ZAF A;  3AFE A;  2JBS A;  3RKH A;  1BUC A;  3PFD A;  3MMO A;  3SXQ A;  4M9A A;  3BNG A;  3OWA A;  4JEK A;  4OO2 A;  2REH A;  1EGC A;  2JIF A;  4NXL A;  1OAH A;  4XVX A;  3MKH A;  1WS9 A;  3D9G A;  3BNJ A;  2D29 A;  2DDH A;  1QDB A;  4G5E A;  2YYI A;  2RFQ A;  5K3G A;  1JQI A;  2R0M A;  4L3X A;  1W07 A;  2A1T A;  2ZO5 A;  3D6B A;  3B96 A;  2FON A;  4X28 A;  1U8V A;  3LGQ A;  2PG0 A;  2IX5 A; 
#chains in the Genus database with same CATH topology
 2EBF X;  2XS1 A;  4J1V A;  4KTO A;  4KS9 A;  3D9F A;  2CJ5 A;  2J7A A;  1RJ1 A;  1GU6 A;  4KCF A;  2PNR A;  3MDE A;  4DZY A;  2LFW A;  4IV6 A;  2EBH X;  2XS8 A;  1XFV A;  4W9U A;  1RJ4 A;  3TZ2 A;  1SIQ A;  1K8T A;  4V26 A;  1S26 A;  2R03 A;  4L3Z A;  4KSA A;  2AO2 A;  4L38 A;  1UDY A;  3GQT A;  2CJ4 A;  4Q1O A;  2YYK A;  3R7K A;  4WJY A;  1XG2 B;  5J6A A;  2R0N A;  2FP2 A;  4HKR A;  4IRN A;  1XFX A;  3CRK A;  1PI1 A;  2BU8 A;  3L1T A;  4MPN A;  4V25 A;  1FS9 A;  2VF1 A;  3SWO A;  2BU5 A;  3D9E A;  5K3J A;  2E81 A;  2Z1Q A;  2OT4 A;  1Y8O A;  2C0U A;  4P13 A;  3X0Y A;  2QR4 A;  1UKW A;  3MPI A;  3HWC A;  1GJV A;  4MPE A;  4Q0T A;  2ZKJ A;  3D1I A;  2Q8F A;  2VIG A;  3Q23 A;  5M4K A;  3DJL A;  2OR0 A;  2VR0 A;  3II9 A;  4FF2 A;  1RP3 A;  3EON A;  1IVH A;  3D9D A;  1GKX A;  2HJN A;  4Q17 A;  2Q8H A;  1K93 A;  2BU6 A;  2YYG A;  3Q24 A;  3C2P A;  4H85 A;  2EC5 A;  3TOR A;  3OWM A;  1EGD A;  2BTZ A;  3BNH A;  1R2J A;  4MP7 A;  2UXW A;  2YYL A;  4Q5B A;  4MP2 A;  3KML A;  4Q5C A;  3TZ5 A;  1T9G A;  1FS7 A;  3M9V A;  1Y8N A;  2CX9 A;  4AKG A;  2JBT A;  1RX0 A;  3GM6 A;  3U33 A;  2EBA A;  3TTB A;  2GBB A;  1JM6 A;  1LVC A;  4O5M A;  3BNF A;  4H7Q A;  2OEX A;  4LQQ B;  4MPC A;  5M4N A;  3MXL A;  3NF4 A;  2Q8G A;  2AZE A;  1XFY A;  3S7W A;  3UBR A;  4AKI A;  4HR3 A;  4JIO A;  2C12 A;  1XFU A;  3CE2 A;  3OIB A;  2JBR A;  2WBI A;  1FS8 A;  4AI6 A;  4L1F A;  2R05 A;  1PK0 A;  3SF6 A;  5M4P A;  1IS2 A;  3FCJ A;  4E02 A;  5K3I A;  3EOM A;  1SIR A;  1K90 A;  3C3L A;  4L3Y A;  2E80 A;  4P79 A;  4RM7 A;  3CRL A;  4ZYJ A;  5J71 A;  3SCE A;  3MDD A;  3GNC A;  3N0R A;  3Q0A A;  2ZDY A;  4FF3 A;  3UU9 A;  1Y0V A;  3X0X A;  2DVL A;  4N5F A;  2YYJ A;  3Q22 A;  4DOY A;  4Q4U A;  2IX6 A;  4X28 C;  2RDZ A;  3FO3 A;  3MPJ A;  3AFF A;  5K3H A;  3LG1 A;  4U83 A;  2YYM A;  5B5V A;  3F29 A;  4G97 A;  2RF7 A;  4ZXV A;  3P4T A;  5BRM A;  1EGE A;  4F0X A;  2ZAF A;  2CJ6 A;  2OJQ A;  3AFE A;  1X90 A;  2BU7 A;  2JBS A;  3RKH A;  4HKS A;  3TZ0 A;  5B5W A;  1BUC A;  3PFD A;  3MMO A;  1XFW A;  2PO4 A;  3SXQ A;  2FP1 A;  4M9A A;  2OEV A;  1X91 A;  3BNG A;  4E01 A;  3C46 A;  3OWA A;  4JEK A;  5M4M A;  4OO2 A;  2REH A;  1EGC A;  2JIF A;  4NXL A;  1OAH A;  1X8Z A;  1XFZ A;  5GJW E;  3VKH A;  4XVX A;  3MKH A;  1WS9 A;  2CJ8 A;  3D9G A;  3X29 A;  4AKH A;  5B6B A;  1Y8P A;  3BNJ A;  3VAD A;  2D29 A;  2DDH A;  1QDB A;  4G5E A;  1SK6 A;  4FF4 A;  2CJ7 A;  2XQR B;  5EZ3 A;  3TZ4 A;  4QIC A;  2YYI A;  2RFQ A;  4E00 A;  4KSF A;  5K3G A;  4LQS B;  1JQI A;  4FF1 A;  3VKG A;  2R0M A;  4L3X A;  1W07 A;  2A1T A;  5GJV E;  2ZO5 A;  3D6B A;  3D2R A;  4FZ4 A;  3B96 A;  2FON A;  4H81 A;  2ZDX A;  2R02 A;  1SC5 A;  4JIZ A;  1R3B A;  4X28 A;  1U8V A;  1GKZ A;  2F6L A;  3LGQ A;  2BU2 A;  2YGW A;  2E0A A;  2Q8I A;  5BRK A;  2PG0 A;  2IX5 A; 
#chains in the Genus database with same CATH homology
 4KTO A;  3D9F A;  2J7A A;  1GU6 A;  4KCF A;  3MDE A;  4IV6 A;  4W9U A;  1SIQ A;  4L3Z A;  4L38 A;  1UDY A;  3GQT A;  4Q1O A;  2YYK A;  3R7K A;  4WJY A;  2R0N A;  4IRN A;  3L1T A;  1FS9 A;  3SWO A;  2E81 A;  3D9E A;  5K3J A;  2Z1Q A;  2OT4 A;  2C0U A;  4P13 A;  3X0Y A;  3HWC A;  1UKW A;  3MPI A;  4Q0T A;  3D1I A;  2VIG A;  2OR0 A;  2VR0 A;  3II9 A;  3EON A;  1IVH A;  3D9D A;  4Q17 A;  2YYG A;  3TOR A;  3OWM A;  1EGD A;  3BNH A;  1R2J A;  2UXW A;  2YYL A;  4Q5B A;  4Q5C A;  1T9G A;  1FS7 A;  3M9V A;  2CX9 A;  2JBT A;  1RX0 A;  3GM6 A;  2EBA A;  3TTB A;  3BNF A;  4O5M A;  3MXL A;  3NF4 A;  3S7W A;  3UBR A;  4HR3 A;  2C12 A;  3OIB A;  2JBR A;  2WBI A;  1FS8 A;  4L1F A;  3SF6 A;  1IS2 A;  3FCJ A;  5K3I A;  3EOM A;  1SIR A;  4L3Y A;  2E80 A;  4RM7 A;  4ZYJ A;  3SCE A;  3MDD A;  3GNC A;  3UU9 A;  3X0X A;  2DVL A;  4N5F A;  2YYJ A;  4DOY A;  4Q4U A;  2IX6 A;  4X28 C;  2RDZ A;  3FO3 A;  3MPJ A;  3AFF A;  5K3H A;  3LG1 A;  4U83 A;  2YYM A;  3F29 A;  2RF7 A;  4ZXV A;  3P4T A;  1EGE A;  2ZAF A;  3AFE A;  2JBS A;  3RKH A;  1BUC A;  3PFD A;  3MMO A;  3SXQ A;  4M9A A;  3BNG A;  3OWA A;  4JEK A;  4OO2 A;  2REH A;  1EGC A;  2JIF A;  4NXL A;  1OAH A;  4XVX A;  3MKH A;  1WS9 A;  3D9G A;  3BNJ A;  2D29 A;  2DDH A;  1QDB A;  4G5E A;  2YYI A;  2RFQ A;  5K3G A;  1JQI A;  2R0M A;  4L3X A;  1W07 A;  2A1T A;  2ZO5 A;  3D6B A;  3B96 A;  2FON A;  4X28 A;  1U8V A;  3LGQ A;  2PG0 A;  2IX5 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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2JIFA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations