3B96 | Genus

Total Genus 211

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	211
sequence length	587
structure length	554
Chain Sequence	ESKSFAVGMFKGQLTTDQVFPYPSVLNEEQTQFLKELVEPVSRFFEEVNDPAKNDALEMVEETTWQGLKELGAFGLQVPSELGGVGLCNTQYARLVEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGITHGPPEKKMGIKASNTAEVFFDGVRVPSENVLGEVGSGFKVAMHILNNGRFGMAAALAGTMRGIIAKAVDHATNRTQFGEKIHNFGLIQEKLARMVMLQYVTESMAYMVSANMDQGATDFQIEAAISKIFGSEAAWKVTDECIQIMGGMGFMKEPGVERVLRDLRIFRIFEGTNDILRLFVALQGCMDKGKELSLSLSGLVHPELSRSGELAVRALEQFATVVEAKLIKHKKGIVNEQFLLQRLADGAIDLYAMVVVLSRASRSLSEGHPTAQHEKMLCDTWCIEAAARIREGMAALQSDPWQQELYRNFKSISKALVERGGVVTSNPLGF

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Oxidoreductase
source organism	Homo sapiens
publication title	Structural basis for substrate fatty acyl chain specificity: crystal structure of human very-long-chain acyl-CoA dehydrogenase. pubmed doi rcsb
molecule keywords	Very long-chain specific acyl-CoA dehydrogenase
total genus	211
structure length	554
sequence length	587
ec nomenclature	ec 1.3.8.9: Very-long-chain acyl-CoA dehydrogenase.
pdb deposition date	2007-11-02

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00441	Acyl-CoA_dh_1	Acyl-CoA dehydrogenase, C-terminal domain
A	PF02770	Acyl-CoA_dh_M	Acyl-CoA dehydrogenase, middle domain
A	PF02771	Acyl-CoA_dh_N	Acyl-CoA dehydrogenase, N-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.540.10	Mainly Alpha	Orthogonal Bundle	Butyryl-Coa Dehydrogenase, subunit A; domain 1	Acyl-CoA dehydrogenase/oxidase, N-terminal domain	3b96A02
1.20.140.10	Mainly Alpha	Up-down Bundle	Butyryl-CoA Dehydrogenase, subunit A; domain 3	Butyryl-CoA Dehydrogenase, subunit A, domain 3	3b96A04
1.20.140.10	Mainly Alpha	Up-down Bundle	Butyryl-CoA Dehydrogenase, subunit A; domain 3	Butyryl-CoA Dehydrogenase, subunit A, domain 3	3b96A01
2.40.110.10	Mainly Beta	Beta Barrel	Butyryl-CoA Dehydrogenase, subunit A; domain 2	Butyryl-CoA Dehydrogenase, subunit A, domain 2	3b96A03

5K3JA 3LGQA 2A1TA 5K3HA 2YYIA 4P13A 4U83A 3II9A 1IVHA 4G5EA 3SCEA 2WBIA 3BNJA 3GNCA 3GM6A 3MDEA 2PG0A 1SIRA 2YYGA 4XVXA 2E80A 2JBRA 3D9DA 4M9AA 2D29A 3SWOA 3D9GA 1FS8A 4Q5BA 1QDBA 3UU9A 4KCFA 4WJYA 2EBAA 2IX5A 3D1IA 2VR0A 1OAHA 2DVLA 2JBTA 2REHA 1UKWA 4IRNA 4L38A 4X28A 1EGCA 2JBSA 2C0UA 1R2JA 2YYJA 4ZXVA 3S7WA 4L3XA 2OR0A 3TORA 3X0YA 1FS9A 5K3GA 5K3IA 3X0XA 4W9UA 3OIBA 4L1FA 3BNFA 2ZO5A 4Q0TA 2RFQA 4OO2A 2R0NA 3PFDA 4IV6A 3AFEA 4NXLA 3F29A 4HR3A 3MPIA 1GU6A 1EGDA 1UDYA 2J7AA 3AFFA 3M9VA 4KTOA 3BNGA 3EONA 1FS7A 3L1TA 3SXQA 1EGEA 1SIQA 4JEKA 3MMOA 2YYKA 3BNHA 1RX0A 3TTBA 2RF7A 3HWCA 2Z1QA 1W07A 3D9EA 2UXWA 4L3YA 3GQTA 3MKHA 3MPJA 2ZAFA 1U8VA 3NF4A 3B96A 2VIGA 2FONA 3MXLA 1T9GA 4ZYJA 3RKHA 2OT4A 2JIFA 4L3ZA 4N5FA 3R7KA 2E81A 1JQIA 3FCJA 3OWAA 4DOYA 3LG1A 3FO3A 4Q1OA 3MDDA 3P4TA 2IX6A 4RM7A 2R0MA 3OWMA 3SF6A 2DDHA 4Q4UA 4X28C 2CX9A 3D9FA 2YYMA 2RDZA 4O5MA 3D6BA 2YYLA 3UBRA 4Q17A 3EOMA 1WS9A 1BUCA 4Q5CA 1IS2A 2C12A
chains in the Genus database with same CATH superfamily

4AI6A 5K3JA 2GBBA 3LGQA 4HKRA 4LQSB 4E01A 2Q8HA 2A1TA 1S26A 2VF1A 1PI1A 5K3HA 2YYIA 5BRMA 4P13A 3U33A 2CJ7A 4U83A 2Q8FA 2XS1A 4V25A 3II9A 1IVHA 4G5EA 3SCEA 2WBIA 3Q23A 3KMLA 3BNJA 3GNCA 3VKHA 3GM6A 3MDEA 3D2RA 2PG0A 1SIRA 2BU6A 2YYGA 4XVXA 2E80A 2FP1A 2JBRA 5B6BA 3D9DA 4M9AA 2D29A 2YGWA 2CJ8A 3SWOA 2PO4A 3D9GA 1FS8A 4Q5BA 4DZYA 1X8ZA 1QDBA 3UU9A 4KCFA 2OEXA 4WJYA 3C3LA 2EC5A 2EBAA 2IX5A 4G97A 3TZ2A 2R03A 3D1IA 2VR0A 4E00A 1XFZA 1OAHA 2ZDYA 2EBHX 4MPNA 4MPEA 2DVLA 2JBTA 2REHA 1UKWA 4IRNA 1RJ1A 4L38A 4X28A 1EGCA 2JBSA 4AKHA 2C0UA 1JM6A 1R2JA 5M4NA 4FF2A 2YYJA 4ZXVA 3S7WA 1XFWA 2OEVA 4L3XA 2OR0A 3TZ4A 3TORA 4H85A 3X0YA 5M4MA 2R05A 1FS9A 5K3GA 1XFUA 5K3IA 1XFYA 2BU2A 3X0XA 2FP2A 4JIOA 4W9UA 4AKGA 2AZEA 1K90A 3OIBA 4L1FA 2QR4A 2ZO5A 3BNFA 2RFQA 1SC5A 2LFWA 2CJ5A 3CRLA 4Q0TA 4OO2A 4MP7A 2R0NA 1XFVA 1Y8NA 2XQRB 3PFDA 4IV6A 3AFEA 4NXLA 1LVCA 3F29A 4HR3A 1PK0A 3MPIA 1GU6A 2F6LA 1EGDA 1UDYA 2J7AA 3AFFA 4HKSA 5B5WA 3M9VA 4KTOA 1GKXA 3BNGA 3EONA 4LQQB 3Q22A 1FS7A 2CJ4A 4KSAA 4AKIA 3L1TA 4H81A 3SXQA 1EGEA 1SIQA 4JEKA 3MMOA 1XG2B 4FF1A 1R3BA 2YYKA 1RX0A 3BNHA 2BTZA 3TTBA 2RF7A 3HWCA 1GKZA 2CJ6A 2Q8IA 3C2PA 2BU7A 2Z1QA 5GJWE 1W07A 3D9EA 2UXWA 1RP3A 4FF4A 3N0RA 4L3YA 3GQTA 4KS9A 4KSFA 4MPCA 5M4KA 3Q24A 4QICA 3MKHA 3MPJA 1GJVA 1K93A 5EZ3A 3TZ0A 2ZAFA 1U8VA 3CRKA 3X29A 3VKGA 3NF4A 3DJLA 2PNRA 3B96A 1XFXA 2VIGA 2FONA 3MXLA 2OJQA 1T9GA 2BU5A 4ZYJA 3CE2A 4P79A 3RKHA 4MP2A 2OT4A 1Y8PA 2JIFA 4L3ZA 4N5FA 3R7KA 2E81A 2BU8A 4FZ4A 1JQIA 2XS8A 4FF3A 3FCJA 3OWAA 4DOYA 2AO2A 3LG1A 4JIZA 3FO3A 5GJVE 5M4PA 1RJ4A 4Q1OA 3Q0AA 3MDDA 2ZDXA 3VADA 1Y0VA 3P4TA 2IX6A 4F0XA 2E0AA 3TZ5A 4RM7A 2R0MA 3OWMA 3SF6A 2DDHA 4Q4UA 1X90A 4X28C 2CX9A 3D9FA 4V26A 4E02A 2YYMA 2RDZA 1SK6A 1Y8OA 2R02A 4O5MA 2Q8GA 3D6BA 2YYLA 2ZKJA 3UBRA 1K8TA 5J71A 4Q17A 3EOMA 4H7QA 3C46A 1WS9A 1BUCA 2HJNA 2EBFX 4Q5CA 5B5VA 5BRKA 4J1VA 1IS2A 5J6AA 2C12A 1X91A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 5K3J A;  3LGQ A;  2A1T A;  5K3H A;  2YYI A;  4P13 A;  4U83 A;  3II9 A;  1IVH A;  4G5E A;  3SCE A;  2WBI A;  3BNJ A;  3GNC A;  3GM6 A;  3MDE A;  2PG0 A;  1SIR A;  2YYG A;  4XVX A;  2E80 A;  2JBR A;  3D9D A;  4M9A A;  2D29 A;  3SWO A;  3D9G A;  1FS8 A;  4Q5B A;  1QDB A;  3UU9 A;  4KCF A;  4WJY A;  2EBA A;  2IX5 A;  3D1I A;  2VR0 A;  1OAH A;  2DVL A;  2JBT A;  2REH A;  1UKW A;  4IRN A;  4L38 A;  4X28 A;  1EGC A;  2JBS A;  2C0U A;  1R2J A;  2YYJ A;  4ZXV A;  3S7W A;  4L3X A;  2OR0 A;  3TOR A;  3X0Y A;  1FS9 A;  5K3G A;  5K3I A;  3X0X A;  4W9U A;  3OIB A;  4L1F A;  3BNF A;  2ZO5 A;  4Q0T A;  2RFQ A;  4OO2 A;  2R0N A;  3PFD A;  4IV6 A;  3AFE A;  4NXL A;  3F29 A;  4HR3 A;  3MPI A;  1GU6 A;  1EGD A;  1UDY A;  2J7A A;  3AFF A;  3M9V A;  4KTO A;  3BNG A;  3EON A;  1FS7 A;  3L1T A;  3SXQ A;  1EGE A;  1SIQ A;  4JEK A;  3MMO A;  2YYK A;  3BNH A;  1RX0 A;  3TTB A;  2RF7 A;  3HWC A;  2Z1Q A;  1W07 A;  3D9E A;  2UXW A;  4L3Y A;  3GQT A;  3MKH A;  3MPJ A;  2ZAF A;  1U8V A;  3NF4 A;  3B96 A;  2VIG A;  2FON A;  3MXL A;  1T9G A;  4ZYJ A;  3RKH A;  2OT4 A;  2JIF A;  4L3Z A;  4N5F A;  3R7K A;  2E81 A;  1JQI A;  3FCJ A;  3OWA A;  4DOY A;  3LG1 A;  3FO3 A;  4Q1O A;  3MDD A;  3P4T A;  2IX6 A;  4RM7 A;  2R0M A;  3OWM A;  3SF6 A;  2DDH A;  4Q4U A;  4X28 C;  2CX9 A;  3D9F A;  2YYM A;  2RDZ A;  4O5M A;  3D6B A;  2YYL A;  3UBR A;  4Q17 A;  3EOM A;  1WS9 A;  1BUC A;  4Q5C A;  1IS2 A;  2C12 A; 
#chains in the Genus database with same CATH topology
 4AI6 A;  5K3J A;  2GBB A;  3LGQ A;  4HKR A;  4LQS B;  4E01 A;  2Q8H A;  2A1T A;  1S26 A;  2VF1 A;  1PI1 A;  5K3H A;  2YYI A;  5BRM A;  4P13 A;  3U33 A;  2CJ7 A;  4U83 A;  2Q8F A;  2XS1 A;  4V25 A;  3II9 A;  1IVH A;  4G5E A;  3SCE A;  2WBI A;  3Q23 A;  3KML A;  3BNJ A;  3GNC A;  3VKH A;  3GM6 A;  3MDE A;  3D2R A;  2PG0 A;  1SIR A;  2BU6 A;  2YYG A;  4XVX A;  2E80 A;  2FP1 A;  2JBR A;  5B6B A;  3D9D A;  4M9A A;  2D29 A;  2YGW A;  2CJ8 A;  3SWO A;  2PO4 A;  3D9G A;  1FS8 A;  4Q5B A;  4DZY A;  1X8Z A;  1QDB A;  3UU9 A;  4KCF A;  2OEX A;  4WJY A;  3C3L A;  2EC5 A;  2EBA A;  2IX5 A;  4G97 A;  3TZ2 A;  2R03 A;  3D1I A;  2VR0 A;  4E00 A;  1XFZ A;  1OAH A;  2ZDY A;  2EBH X;  4MPN A;  4MPE A;  2DVL A;  2JBT A;  2REH A;  1UKW A;  4IRN A;  1RJ1 A;  4L38 A;  4X28 A;  1EGC A;  2JBS A;  4AKH A;  2C0U A;  1JM6 A;  1R2J A;  5M4N A;  4FF2 A;  2YYJ A;  4ZXV A;  3S7W A;  1XFW A;  2OEV A;  4L3X A;  2OR0 A;  3TZ4 A;  3TOR A;  4H85 A;  3X0Y A;  5M4M A;  2R05 A;  1FS9 A;  5K3G A;  1XFU A;  5K3I A;  1XFY A;  2BU2 A;  3X0X A;  2FP2 A;  4JIO A;  4W9U A;  4AKG A;  2AZE A;  1K90 A;  3OIB A;  4L1F A;  2QR4 A;  2ZO5 A;  3BNF A;  2RFQ A;  1SC5 A;  2LFW A;  2CJ5 A;  3CRL A;  4Q0T A;  4OO2 A;  4MP7 A;  2R0N A;  1XFV A;  1Y8N A;  2XQR B;  3PFD A;  4IV6 A;  3AFE A;  4NXL A;  1LVC A;  3F29 A;  4HR3 A;  1PK0 A;  3MPI A;  1GU6 A;  2F6L A;  1EGD A;  1UDY A;  2J7A A;  3AFF A;  4HKS A;  5B5W A;  3M9V A;  4KTO A;  1GKX A;  3BNG A;  3EON A;  4LQQ B;  3Q22 A;  1FS7 A;  2CJ4 A;  4KSA A;  4AKI A;  3L1T A;  4H81 A;  3SXQ A;  1EGE A;  1SIQ A;  4JEK A;  3MMO A;  1XG2 B;  4FF1 A;  1R3B A;  2YYK A;  1RX0 A;  3BNH A;  2BTZ A;  3TTB A;  2RF7 A;  3HWC A;  1GKZ A;  2CJ6 A;  2Q8I A;  3C2P A;  2BU7 A;  2Z1Q A;  5GJW E;  1W07 A;  3D9E A;  2UXW A;  1RP3 A;  4FF4 A;  3N0R A;  4L3Y A;  3GQT A;  4KS9 A;  4KSF A;  4MPC A;  5M4K A;  3Q24 A;  4QIC A;  3MKH A;  3MPJ A;  1GJV A;  1K93 A;  5EZ3 A;  3TZ0 A;  2ZAF A;  1U8V A;  3CRK A;  3X29 A;  3VKG A;  3NF4 A;  3DJL A;  2PNR A;  3B96 A;  1XFX A;  2VIG A;  2FON A;  3MXL A;  2OJQ A;  1T9G A;  2BU5 A;  4ZYJ A;  3CE2 A;  4P79 A;  3RKH A;  4MP2 A;  2OT4 A;  1Y8P A;  2JIF A;  4L3Z A;  4N5F A;  3R7K A;  2E81 A;  2BU8 A;  4FZ4 A;  1JQI A;  2XS8 A;  4FF3 A;  3FCJ A;  3OWA A;  4DOY A;  2AO2 A;  3LG1 A;  4JIZ A;  3FO3 A;  5GJV E;  5M4P A;  1RJ4 A;  4Q1O A;  3Q0A A;  3MDD A;  2ZDX A;  3VAD A;  1Y0V A;  3P4T A;  2IX6 A;  4F0X A;  2E0A A;  3TZ5 A;  4RM7 A;  2R0M A;  3OWM A;  3SF6 A;  2DDH A;  4Q4U A;  1X90 A;  4X28 C;  2CX9 A;  3D9F A;  4V26 A;  4E02 A;  2YYM A;  2RDZ A;  1SK6 A;  1Y8O A;  2R02 A;  4O5M A;  2Q8G A;  3D6B A;  2YYL A;  2ZKJ A;  3UBR A;  1K8T A;  5J71 A;  4Q17 A;  3EOM A;  4H7Q A;  3C46 A;  1WS9 A;  1BUC A;  2HJN A;  2EBF X;  4Q5C A;  5B5V A;  5BRK A;  4J1V A;  1IS2 A;  5J6A A;  2C12 A;  1X91 A; 
#chains in the Genus database with same CATH homology
 5K3J A;  3LGQ A;  2A1T A;  5K3H A;  2YYI A;  4P13 A;  4U83 A;  3II9 A;  1IVH A;  4G5E A;  3SCE A;  2WBI A;  3BNJ A;  3GNC A;  3GM6 A;  3MDE A;  2PG0 A;  1SIR A;  2YYG A;  4XVX A;  2E80 A;  2JBR A;  3D9D A;  4M9A A;  2D29 A;  3SWO A;  3D9G A;  1FS8 A;  4Q5B A;  1QDB A;  3UU9 A;  4KCF A;  4WJY A;  2EBA A;  2IX5 A;  3D1I A;  2VR0 A;  1OAH A;  2DVL A;  2JBT A;  2REH A;  1UKW A;  4IRN A;  4L38 A;  4X28 A;  1EGC A;  2JBS A;  2C0U A;  1R2J A;  2YYJ A;  4ZXV A;  3S7W A;  4L3X A;  2OR0 A;  3TOR A;  3X0Y A;  1FS9 A;  5K3G A;  5K3I A;  3X0X A;  4W9U A;  3OIB A;  4L1F A;  3BNF A;  2ZO5 A;  4Q0T A;  2RFQ A;  4OO2 A;  2R0N A;  3PFD A;  4IV6 A;  3AFE A;  4NXL A;  3F29 A;  4HR3 A;  3MPI A;  1GU6 A;  1EGD A;  1UDY A;  2J7A A;  3AFF A;  3M9V A;  4KTO A;  3BNG A;  3EON A;  1FS7 A;  3L1T A;  3SXQ A;  1EGE A;  1SIQ A;  4JEK A;  3MMO A;  2YYK A;  3BNH A;  1RX0 A;  3TTB A;  2RF7 A;  3HWC A;  2Z1Q A;  1W07 A;  3D9E A;  2UXW A;  4L3Y A;  3GQT A;  3MKH A;  3MPJ A;  2ZAF A;  1U8V A;  3NF4 A;  3B96 A;  2VIG A;  2FON A;  3MXL A;  1T9G A;  4ZYJ A;  3RKH A;  2OT4 A;  2JIF A;  4L3Z A;  4N5F A;  3R7K A;  2E81 A;  1JQI A;  3FCJ A;  3OWA A;  4DOY A;  3LG1 A;  3FO3 A;  4Q1O A;  3MDD A;  3P4T A;  2IX6 A;  4RM7 A;  2R0M A;  3OWM A;  3SF6 A;  2DDH A;  4Q4U A;  4X28 C;  2CX9 A;  3D9F A;  2YYM A;  2RDZ A;  4O5M A;  3D6B A;  2YYL A;  3UBR A;  4Q17 A;  3EOM A;  1WS9 A;  1BUC A;  4Q5C A;  1IS2 A;  2C12 A;

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similar chains in the Genus database (?% sequence similarity)

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3B96A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations