3D9E | Genus

Total Genus 158

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	158
sequence length	431
structure length	431
Chain Sequence	VDFKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILEELFAVEPATSITIVATALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFNGGNIGLRRRQMQRVMALEDYEPWAATYGSS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Oxidoreductase
source organism	Fusarium oxysporum
publication title	Crystal structures of intermediates in the nitroalkane oxidase reaction. pubmed doi rcsb
molecule keywords	Nitroalkane oxidase
total genus	158
structure length	431
sequence length	431
chains with identical sequence	B, C, D
ec nomenclature	ec 1.7.3.1: Nitroalkane oxidase.
pdb deposition date	2008-05-27

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00441	Acyl-CoA_dh_1	Acyl-CoA dehydrogenase, C-terminal domain
A	PF02771	Acyl-CoA_dh_N	Acyl-CoA dehydrogenase, N-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.540.10	Mainly Alpha	Orthogonal Bundle	Butyryl-Coa Dehydrogenase, subunit A; domain 1	Acyl-CoA dehydrogenase/oxidase, N-terminal domain	3d9eA01
1.20.140.10	Mainly Alpha	Up-down Bundle	Butyryl-CoA Dehydrogenase, subunit A; domain 3	Butyryl-CoA Dehydrogenase, subunit A, domain 3	3d9eA03
2.40.110.10	Mainly Beta	Beta Barrel	Butyryl-CoA Dehydrogenase, subunit A; domain 2	Butyryl-CoA Dehydrogenase, subunit A, domain 2	3d9eA02

3D6BA 4OO2A 4Q5BA 2IX6A 3HWCA 3EONA 3MDDA 2YYJA 3PFDA 1RX0A 3SXQA 3GNCA 4KTOA 1OAHA 2CX9A 1SIRA 3D9EA 3FCJA 2RFQA 1UDYA 5K3IA 2Z1QA 2YYMA 3BNHA 1JQIA 4P13A 2J7AA 3GQTA 3AFFA 2YYKA 4IV6A 4NXLA 3F29A 3TTBA 1FS9A 2YYLA 4IRNA 4L3ZA 1EGCA 5K3GA 2VIGA 4W9UA 2PG0A 4DOYA 4Q5CA 2A1TA 3D9DA 2C0UA 4L38A 3II9A 3M9VA 4HR3A 1QDBA 3OWMA 2YYIA 3OIBA 4ZXVA 2VR0A 3MPJA 4M9AA 3SF6A 2E81A 1IS2A 1R2JA 3MMOA 3UU9A 2UXWA 2REHA 3AFEA 4U83A 2D29A 3MXLA 4XVXA 3EOMA 3SWOA 3FO3A 3GM6A 2JBSA 4KCFA 3X0YA 1EGEA 3D9GA 1SIQA 4Q0TA 2RDZA 4L3XA 3SCEA 5K3HA 4G5EA 4RM7A 2JBRA 3B96A 2OR0A 2FONA 2JIFA 1EGDA 1WS9A 4N5FA 3D1IA 3MPIA 3S7WA 3TORA 4X28C 5K3JA 3D9FA 2ZO5A 3UBRA 4WJYA 3NF4A 3MKHA 1U8VA 4Q17A 4JEKA 1IVHA 3RKHA 3MDEA 4L3YA 2C12A 3BNJA 3OWAA 2E80A 2RF7A 1FS7A 2EBAA 4Q1OA 4ZYJA 2OT4A 1UKWA 2R0MA 4L1FA 2R0NA 3R7KA 2YYGA 2DDHA 2WBIA 2DVLA 3LG1A 2IX5A 3BNFA 1W07A 2JBTA 3X0XA 3L1TA 3P4TA 4O5MA 1GU6A 3BNGA 2ZAFA 1FS8A 1BUCA 4X28A 3LGQA 1T9GA 4Q4UA
chains in the Genus database with same CATH superfamily

3D6BA 4HKRA 4OO2A 1X8ZA 2Q8IA 3C2PA 4Q5BA 5EZ3A 2IX6A 3HWCA 3EONA 3MDDA 2YYJA 3PFDA 4E02A 1RX0A 4E01A 3SXQA 1PI1A 1GKXA 3GNCA 4KTOA 3TZ5A 2BU2A 1OAHA 2CJ7A 2CX9A 1SIRA 3D9EA 3FCJA 2RFQA 1UDYA 5K3IA 3TZ2A 2Z1QA 2YYMA 3Q23A 1Y8OA 3D2RA 3BNHA 4FF2A 1S26A 4DZYA 4KSAA 1XFZA 3N0RA 1JQIA 2OJQA 1SC5A 4P13A 2J7AA 1XFUA 5B5VA 3GQTA 3AFFA 2EBHX 5M4NA 1RJ1A 2YYKA 2FP2A 3KMLA 4FZ4A 4IV6A 5BRKA 5M4KA 4NXLA 2ZDYA 1GKZA 3F29A 3U33A 1R3BA 3TTBA 1FS9A 2YYLA 4IRNA 2PNRA 4MP7A 4L3ZA 1EGCA 3C46A 5K3GA 3VKHA 2VIGA 2ZDXA 4W9UA 2PG0A 2VF1A 4DOYA 2XS1A 4Q5CA 4AKGA 3DJLA 2A1TA 3D9DA 2C0UA 4L38A 3II9A 3CRKA 3M9VA 1JM6A 1PK0A 1X90A 4HR3A 1QDBA 2F6LA 4LQSB 3OWMA 5M4MA 4P79A 2YYIA 4KS9A 3OIBA 4H85A 4ZXVA 2VR0A 4V25A 1X91A 2E0AA 3MPJA 4M9AA 3VADA 3Q0AA 3SF6A 4AI6A 4E00A 2E81A 1IS2A 4LQQB 1R2JA 1K93A 2BU8A 3TZ0A 2PO4A 2OEXA 3MMOA 3UU9A 2OEVA 4V26A 2UXWA 2REHA 3AFEA 4U83A 2BU7A 2D29A 2AO2A 2CJ6A 4JIZA 3TZ4A 1LVCA 3MXLA 4XVXA 4MPNA 3EOMA 1GJVA 3SWOA 2BU5A 4G97A 2R03A 3FO3A 2Q8GA 1XFYA 3GM6A 2JBSA 4KCFA 3X0YA 1EGEA 3D9GA 2CJ8A 1XFWA 2QR4A 2ZKJA 4FF4A 1SIQA 4Q0TA 4J1VA 5J6AA 2BTZA 4FF1A 2RDZA 4L3XA 2Q8FA 5K3HA 2YGWA 4G5EA 3SCEA 4JIOA 2Q8HA 1K8TA 4RM7A 4FF3A 4MP2A 2AZEA 2JBRA 3B96A 2OR0A 3CRLA 2FONA 2JIFA 1EGDA 1WS9A 4N5FA 5GJWE 5B5WA 3D1IA 5J71A 3MPIA 1RJ4A 2EBFX 3S7WA 5BRMA 1XFXA 1K90A 3VKGA 3TORA 4X28C 5K3JA 3D9FA 2HJNA 2ZO5A 4MPEA 4WJYA 3UBRA 3CE2A 3Q24A 3NF4A 1Y8PA 3MKHA 2LFWA 1U8VA 2XQRB 4H81A 4H7QA 4Q17A 4JEKA 3X29A 5B6BA 1IVHA 2R05A 3MDEA 4L3YA 3RKHA 5M4PA 2C12A 3BNJA 4HKSA 4QICA 3OWAA 2E80A 2GBBA 1Y8NA 2RF7A 3C3LA 1Y0VA 2R02A 1FS7A 2EBAA 4Q1OA 1RP3A 4KSFA 4ZYJA 2OT4A 1UKWA 2R0MA 4L1FA 4F0XA 2R0NA 3R7KA 2CJ5A 2DDHA 2WBIA 2DVLA 2BU6A 2YYGA 2EC5A 3LG1A 2CJ4A 2XS8A 5GJVE 2IX5A 3BNFA 1XG2B 1W07A 2JBTA 3X0XA 1SK6A 3L1TA 3Q22A 3P4TA 2FP1A 4O5MA 1GU6A 4AKIA 3BNGA 2ZAFA 1FS8A 1BUCA 4MPCA 4X28A 3LGQA 1XFVA 4AKHA 1T9GA 4Q4UA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3D6B A;  4OO2 A;  4Q5B A;  2IX6 A;  3HWC A;  3EON A;  3MDD A;  2YYJ A;  3PFD A;  1RX0 A;  3SXQ A;  3GNC A;  4KTO A;  1OAH A;  2CX9 A;  1SIR A;  3D9E A;  3FCJ A;  2RFQ A;  1UDY A;  5K3I A;  2Z1Q A;  2YYM A;  3BNH A;  1JQI A;  4P13 A;  2J7A A;  3GQT A;  3AFF A;  2YYK A;  4IV6 A;  4NXL A;  3F29 A;  3TTB A;  1FS9 A;  2YYL A;  4IRN A;  4L3Z A;  1EGC A;  5K3G A;  2VIG A;  4W9U A;  2PG0 A;  4DOY A;  4Q5C A;  2A1T A;  3D9D A;  2C0U A;  4L38 A;  3II9 A;  3M9V A;  4HR3 A;  1QDB A;  3OWM A;  2YYI A;  3OIB A;  4ZXV A;  2VR0 A;  3MPJ A;  4M9A A;  3SF6 A;  2E81 A;  1IS2 A;  1R2J A;  3MMO A;  3UU9 A;  2UXW A;  2REH A;  3AFE A;  4U83 A;  2D29 A;  3MXL A;  4XVX A;  3EOM A;  3SWO A;  3FO3 A;  3GM6 A;  2JBS A;  4KCF A;  3X0Y A;  1EGE A;  3D9G A;  1SIQ A;  4Q0T A;  2RDZ A;  4L3X A;  3SCE A;  5K3H A;  4G5E A;  4RM7 A;  2JBR A;  3B96 A;  2OR0 A;  2FON A;  2JIF A;  1EGD A;  1WS9 A;  4N5F A;  3D1I A;  3MPI A;  3S7W A;  3TOR A;  4X28 C;  5K3J A;  3D9F A;  2ZO5 A;  3UBR A;  4WJY A;  3NF4 A;  3MKH A;  1U8V A;  4Q17 A;  4JEK A;  1IVH A;  3RKH A;  3MDE A;  4L3Y A;  2C12 A;  3BNJ A;  3OWA A;  2E80 A;  2RF7 A;  1FS7 A;  2EBA A;  4Q1O A;  4ZYJ A;  2OT4 A;  1UKW A;  2R0M A;  4L1F A;  2R0N A;  3R7K A;  2YYG A;  2DDH A;  2WBI A;  2DVL A;  3LG1 A;  2IX5 A;  3BNF A;  1W07 A;  2JBT A;  3X0X A;  3L1T A;  3P4T A;  4O5M A;  1GU6 A;  3BNG A;  2ZAF A;  1FS8 A;  1BUC A;  4X28 A;  3LGQ A;  1T9G A;  4Q4U A; 
#chains in the Genus database with same CATH topology
 3D6B A;  4HKR A;  4OO2 A;  1X8Z A;  2Q8I A;  3C2P A;  4Q5B A;  5EZ3 A;  2IX6 A;  3HWC A;  3EON A;  3MDD A;  2YYJ A;  3PFD A;  4E02 A;  1RX0 A;  4E01 A;  3SXQ A;  1PI1 A;  1GKX A;  3GNC A;  4KTO A;  3TZ5 A;  2BU2 A;  1OAH A;  2CJ7 A;  2CX9 A;  1SIR A;  3D9E A;  3FCJ A;  2RFQ A;  1UDY A;  5K3I A;  3TZ2 A;  2Z1Q A;  2YYM A;  3Q23 A;  1Y8O A;  3D2R A;  3BNH A;  4FF2 A;  1S26 A;  4DZY A;  4KSA A;  1XFZ A;  3N0R A;  1JQI A;  2OJQ A;  1SC5 A;  4P13 A;  2J7A A;  1XFU A;  5B5V A;  3GQT A;  3AFF A;  2EBH X;  5M4N A;  1RJ1 A;  2YYK A;  2FP2 A;  3KML A;  4FZ4 A;  4IV6 A;  5BRK A;  5M4K A;  4NXL A;  2ZDY A;  1GKZ A;  3F29 A;  3U33 A;  1R3B A;  3TTB A;  1FS9 A;  2YYL A;  4IRN A;  2PNR A;  4MP7 A;  4L3Z A;  1EGC A;  3C46 A;  5K3G A;  3VKH A;  2VIG A;  2ZDX A;  4W9U A;  2PG0 A;  2VF1 A;  4DOY A;  2XS1 A;  4Q5C A;  4AKG A;  3DJL A;  2A1T A;  3D9D A;  2C0U A;  4L38 A;  3II9 A;  3CRK A;  3M9V A;  1JM6 A;  1PK0 A;  1X90 A;  4HR3 A;  1QDB A;  2F6L A;  4LQS B;  3OWM A;  5M4M A;  4P79 A;  2YYI A;  4KS9 A;  3OIB A;  4H85 A;  4ZXV A;  2VR0 A;  4V25 A;  1X91 A;  2E0A A;  3MPJ A;  4M9A A;  3VAD A;  3Q0A A;  3SF6 A;  4AI6 A;  4E00 A;  2E81 A;  1IS2 A;  4LQQ B;  1R2J A;  1K93 A;  2BU8 A;  3TZ0 A;  2PO4 A;  2OEX A;  3MMO A;  3UU9 A;  2OEV A;  4V26 A;  2UXW A;  2REH A;  3AFE A;  4U83 A;  2BU7 A;  2D29 A;  2AO2 A;  2CJ6 A;  4JIZ A;  3TZ4 A;  1LVC A;  3MXL A;  4XVX A;  4MPN A;  3EOM A;  1GJV A;  3SWO A;  2BU5 A;  4G97 A;  2R03 A;  3FO3 A;  2Q8G A;  1XFY A;  3GM6 A;  2JBS A;  4KCF A;  3X0Y A;  1EGE A;  3D9G A;  2CJ8 A;  1XFW A;  2QR4 A;  2ZKJ A;  4FF4 A;  1SIQ A;  4Q0T A;  4J1V A;  5J6A A;  2BTZ A;  4FF1 A;  2RDZ A;  4L3X A;  2Q8F A;  5K3H A;  2YGW A;  4G5E A;  3SCE A;  4JIO A;  2Q8H A;  1K8T A;  4RM7 A;  4FF3 A;  4MP2 A;  2AZE A;  2JBR A;  3B96 A;  2OR0 A;  3CRL A;  2FON A;  2JIF A;  1EGD A;  1WS9 A;  4N5F A;  5GJW E;  5B5W A;  3D1I A;  5J71 A;  3MPI A;  1RJ4 A;  2EBF X;  3S7W A;  5BRM A;  1XFX A;  1K90 A;  3VKG A;  3TOR A;  4X28 C;  5K3J A;  3D9F A;  2HJN A;  2ZO5 A;  4MPE A;  4WJY A;  3UBR A;  3CE2 A;  3Q24 A;  3NF4 A;  1Y8P A;  3MKH A;  2LFW A;  1U8V A;  2XQR B;  4H81 A;  4H7Q A;  4Q17 A;  4JEK A;  3X29 A;  5B6B A;  1IVH A;  2R05 A;  3MDE A;  4L3Y A;  3RKH A;  5M4P A;  2C12 A;  3BNJ A;  4HKS A;  4QIC A;  3OWA A;  2E80 A;  2GBB A;  1Y8N A;  2RF7 A;  3C3L A;  1Y0V A;  2R02 A;  1FS7 A;  2EBA A;  4Q1O A;  1RP3 A;  4KSF A;  4ZYJ A;  2OT4 A;  1UKW A;  2R0M A;  4L1F A;  4F0X A;  2R0N A;  3R7K A;  2CJ5 A;  2DDH A;  2WBI A;  2DVL A;  2BU6 A;  2YYG A;  2EC5 A;  3LG1 A;  2CJ4 A;  2XS8 A;  5GJV E;  2IX5 A;  3BNF A;  1XG2 B;  1W07 A;  2JBT A;  3X0X A;  1SK6 A;  3L1T A;  3Q22 A;  3P4T A;  2FP1 A;  4O5M A;  1GU6 A;  4AKI A;  3BNG A;  2ZAF A;  1FS8 A;  1BUC A;  4MPC A;  4X28 A;  3LGQ A;  1XFV A;  4AKH A;  1T9G A;  4Q4U A; 
#chains in the Genus database with same CATH homology
 3D6B A;  4OO2 A;  4Q5B A;  2IX6 A;  3HWC A;  3EON A;  3MDD A;  2YYJ A;  3PFD A;  1RX0 A;  3SXQ A;  3GNC A;  4KTO A;  1OAH A;  2CX9 A;  1SIR A;  3D9E A;  3FCJ A;  2RFQ A;  1UDY A;  5K3I A;  2Z1Q A;  2YYM A;  3BNH A;  1JQI A;  4P13 A;  2J7A A;  3GQT A;  3AFF A;  2YYK A;  4IV6 A;  4NXL A;  3F29 A;  3TTB A;  1FS9 A;  2YYL A;  4IRN A;  4L3Z A;  1EGC A;  5K3G A;  2VIG A;  4W9U A;  2PG0 A;  4DOY A;  4Q5C A;  2A1T A;  3D9D A;  2C0U A;  4L38 A;  3II9 A;  3M9V A;  4HR3 A;  1QDB A;  3OWM A;  2YYI A;  3OIB A;  4ZXV A;  2VR0 A;  3MPJ A;  4M9A A;  3SF6 A;  2E81 A;  1IS2 A;  1R2J A;  3MMO A;  3UU9 A;  2UXW A;  2REH A;  3AFE A;  4U83 A;  2D29 A;  3MXL A;  4XVX A;  3EOM A;  3SWO A;  3FO3 A;  3GM6 A;  2JBS A;  4KCF A;  3X0Y A;  1EGE A;  3D9G A;  1SIQ A;  4Q0T A;  2RDZ A;  4L3X A;  3SCE A;  5K3H A;  4G5E A;  4RM7 A;  2JBR A;  3B96 A;  2OR0 A;  2FON A;  2JIF A;  1EGD A;  1WS9 A;  4N5F A;  3D1I A;  3MPI A;  3S7W A;  3TOR A;  4X28 C;  5K3J A;  3D9F A;  2ZO5 A;  3UBR A;  4WJY A;  3NF4 A;  3MKH A;  1U8V A;  4Q17 A;  4JEK A;  1IVH A;  3RKH A;  3MDE A;  4L3Y A;  2C12 A;  3BNJ A;  3OWA A;  2E80 A;  2RF7 A;  1FS7 A;  2EBA A;  4Q1O A;  4ZYJ A;  2OT4 A;  1UKW A;  2R0M A;  4L1F A;  2R0N A;  3R7K A;  2YYG A;  2DDH A;  2WBI A;  2DVL A;  3LG1 A;  2IX5 A;  3BNF A;  1W07 A;  2JBT A;  3X0X A;  3L1T A;  3P4T A;  4O5M A;  1GU6 A;  3BNG A;  2ZAF A;  1FS8 A;  1BUC A;  4X28 A;  3LGQ A;  1T9G A;  4Q4U A;

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similar chains in the Genus database (?% sequence similarity)

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3D9EA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations