3D9GA

Nitroalkane oxidase: wild type crystallized in a trapped state forming a cyanoadduct with fad
Total Genus 162
50100150200250300350400020406080100120140160
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
162
sequence length
430
structure length
430
Chain Sequence
VDFKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILEELFAVEPATSITIVATALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVMALEDYEPWAATYGS
50100150200250300350400400300200100
050100150Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH3 (38-55)TIV5 (234-237)TIV1 (88-91)AH5 (91-106)TI1 (56-59)3H2 (59-61)EMPTYAH4 (73-85)AH9 (314-342)TII2 (170-173)S4 (183-190)3H4 (118-120)TIV2 (120-123)TI5 (172-175)S1 (129-132)TVIII1 (181-184)S3 (160-168)TI2 (135-138)TI3 (139-142)TI4 (141-144)TII1 (144-147)TIV3 (150-153)S2 (152-157)S7 (244-253)TII'1 (157-160)TI10 (237-240)TII'2 (174-177)TIV4 (175-178)S5 (208-214)S6 (226-230)3H5 (204-206)TVIII2 (191-194)TI6 (193-196)TI7 (199-202)3H6 (254-256)AH7 (215-220)TI8 (222-225)AH11 (387-398)AH12 (408-418)AH8 (263-300)TI13 (398-401)AH10 (348-377)TI12 (383-386)3H7 (310-312)TI16 (423-426)TIV8 (400-403)3H8 (379-382)TIV9 (401-404)TIV10 (404-407)TI15 (419-422)TIV12 (427-430)TIV11 (426-429)AH1 (8-24)3H1 (25-27)AH2 (28-33)3H3 (64-66)AH6 (110-117)TI'1 (303-306)TI11 (343-346)TI17 (425-428)Updating...
connected with : NaN
molecule tags Oxidoreductase
source organism Fusarium oxysporum
publication title Crystal structures of intermediates in the nitroalkane oxidase reaction.
pubmed doi rcsb
molecule keywords Nitroalkane oxidase
total genus 162
structure length 430
sequence length 430
chains with identical sequence B, C, D
ec nomenclature ec 1.7.3.1: Nitroalkane oxidase.
pdb deposition date 2008-05-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 3d9gA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 3d9gA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 3d9gA02
4JEKA 4X28C 1FS7A 2E80A 2VIGA 1U8VA 2OT4A 2REHA 3TORA 3LGQA 2WBIA 4L3XA 2YYKA 5K3GA 2Z1QA 5K3IA 4KCFA 3BNJA 1JQIA 4ZYJA 3TTBA 1SIQA 4IRNA 4DOYA 1UDYA 4P13A 3MDEA 4HR3A 2DDHA 3UBRA 3GNCA 3MKHA 2J7AA 2D29A 3D6BA 4Q1OA 3UU9A 3X0YA 4RM7A 3D9EA 3MPJA 3SWOA 2YYJA 2YYIA 2JBTA 4U83A 3FO3A 1IS2A 4KTOA 2JBSA 2JIFA 4Q5BA 3OWAA 4L1FA 4O5MA 3MMOA 2E81A 1OAHA 2UXWA 3D9GA 1EGDA 4W9UA 4XVXA 2IX5A 1GU6A 2YYLA 3X0XA 3D9FA 3R7KA 4N5FA 2C0UA 4ZXVA 1FS8A 1IVHA 3OIBA 5K3JA 4G5EA 4OO2A 3MXLA 1FS9A 4WJYA 3HWCA 2PG0A 3AFFA 1UKWA 2RDZA 3LG1A 3NF4A 1QDBA 3FCJA 4Q17A 2ZO5A 1EGCA 3II9A 2IX6A 3S7WA 2R0NA 3AFEA 4NXLA 1RX0A 3D9DA 1SIRA 2VR0A 3EONA 2OR0A 1EGEA 3BNFA 4X28A 2CX9A 5K3HA 3P4TA 3SF6A 2YYGA 2C12A 3L1TA 4IV6A 2RFQA 3GQTA 3GM6A 3OWMA 1W07A 4M9AA 2R0MA 4L3ZA 3D1IA 4Q4UA 3PFDA 3MPIA 3BNGA 4L38A 3MDDA 3EOMA 3SXQA 2A1TA 2JBRA 3B96A 1R2JA 3M9VA 2YYMA 2ZAFA 4Q5CA 1BUCA 1WS9A 2DVLA 4L3YA 4Q0TA 3BNHA 3F29A 3RKHA 3SCEA 2RF7A 1T9GA 2FONA 2EBAA
chains in the Genus database with same CATH superfamily
4JEKA 4X28C 1FS7A 2E80A 3N0RA 2VIGA 1JM6A 4P79A 5J6AA 1U8VA 2OT4A 2REHA 2VF1A 3TORA 4HKSA 2Q8HA 2BU5A 3LGQA 4AKGA 2Q8GA 1Y8OA 2WBIA 2FP2A 4L3XA 2YYKA 5K3GA 2CJ5A 2Z1QA 5K3IA 4MPEA 4V26A 2AO2A 2Q8IA 4AKIA 4KCFA 2OJQA 1XFYA 3BNJA 3TZ5A 1XFZA 2OEXA 2BU8A 2HJNA 5M4KA 1JQIA 2BU2A 4ZYJA 3TTBA 1SIQA 4IRNA 4DOYA 1UDYA 4JIOA 3U33A 1GKZA 4E02A 3Q24A 1Y8PA 2CJ6A 5BRKA 2EBHX 2ZDXA 4P13A 3MDEA 4HR3A 1LVCA 2BU7A 4F0XA 3DJLA 2DDHA 3UBRA 2E0AA 3GNCA 3MKHA 2J7AA 3C2PA 1X91A 2R02A 2D29A 3D6BA 4Q1OA 4MP7A 3UU9A 3X29A 2CJ8A 3X0YA 4RM7A 1XFXA 3D9EA 3MPJA 3SWOA 1X8ZA 2YYJA 2YYIA 2XQRB 4AI6A 2XS1A 4J1VA 1XFUA 1PI1A 2JBTA 4U83A 3CRKA 3FO3A 3C3LA 4AKHA 1IS2A 1GKXA 2CJ7A 4KTOA 2ZKJA 2JBSA 2JIFA 3C46A 4Q5BA 3OWAA 4L1FA 2EBFX 4O5MA 3MMOA 4FF2A 5B5WA 2E81A 1K93A 5J71A 1OAHA 4MPCA 2UXWA 3D9GA 2AZEA 1EGDA 4W9UA 4XVXA 2IX5A 2PO4A 4G97A 2CJ4A 4E01A 3D2RA 1GU6A 2YYLA 3X0XA 5GJVE 3D9FA 3R7KA 1SC5A 4N5FA 2C0UA 3CRLA 1PK0A 4ZXVA 2YGWA 3TZ2A 1FS8A 1GJVA 2XS8A 1IVHA 3OIBA 5K3JA 4MPNA 4KSFA 4G5EA 4KS9A 4OO2A 2R05A 3MXLA 1FS9A 2F6LA 4WJYA 5EZ3A 3HWCA 2PG0A 4FZ4A 3AFFA 4H7QA 1UKWA 1K90A 2BTZA 2RDZA 4H81A 5B6BA 2LFWA 4FF4A 2QR4A 4H85A 3LG1A 3NF4A 1QDBA 1RJ1A 1RP3A 5M4MA 4E00A 5M4PA 1Y8NA 3FCJA 4Q17A 1K8TA 1EGCA 2ZO5A 3II9A 5GJWE 3TZ0A 4DZYA 2IX6A 3S7WA 2R0NA 3AFEA 4NXLA 1RX0A 4HKRA 4MP2A 3D9DA 1S26A 1SIRA 2VR0A 4FF3A 3EONA 2OR0A 1EGEA 3BNFA 4V25A 4X28A 2CX9A 5K3HA 3P4TA 3SF6A 2YYGA 2C12A 3L1TA 4IV6A 3VKHA 2RFQA 3VKGA 3GQTA 3GM6A 2FP1A 3OWMA 4JIZA 2Q8FA 3CE2A 1W07A 4M9AA 4LQQB 2R0MA 3KMLA 3D1IA 4L3ZA 4Q4UA 3PFDA 3Q22A 3MPIA 3BNGA 4L38A 3MDDA 2GBBA 3VADA 3EOMA 1XG2B 3SXQA 3Q0AA 2A1TA 2JBRA 1XFWA 4LQSB 3B96A 1R2JA 5B5VA 3M9VA 5M4NA 1XFVA 2YYMA 1X90A 2ZAFA 1RJ4A 2EC5A 4Q5CA 2ZDYA 2R03A 4QICA 1SK6A 2BU6A 1BUCA 1WS9A 2DVLA 4L3YA 4Q0TA 3BNHA 2PNRA 3F29A 4KSAA 3RKHA 5BRMA 1R3BA 3TZ4A 1Y0VA 4FF1A 3SCEA 2RF7A 1T9GA 2FONA 3Q23A 2OEVA 2EBAA
chains in the Genus database with same CATH topology
4JEKA 4X28C 1FS7A 2E80A 2VIGA 1U8VA 2OT4A 2REHA 3TORA 3LGQA 2WBIA 4L3XA 2YYKA 5K3GA 2Z1QA 5K3IA 4KCFA 3BNJA 1JQIA 4ZYJA 3TTBA 1SIQA 4IRNA 4DOYA 1UDYA 4P13A 3MDEA 4HR3A 2DDHA 3UBRA 3GNCA 3MKHA 2J7AA 2D29A 3D6BA 4Q1OA 3UU9A 3X0YA 4RM7A 3D9EA 3MPJA 3SWOA 2YYJA 2YYIA 2JBTA 4U83A 3FO3A 1IS2A 4KTOA 2JBSA 2JIFA 4Q5BA 3OWAA 4L1FA 4O5MA 3MMOA 2E81A 1OAHA 2UXWA 3D9GA 1EGDA 4W9UA 4XVXA 2IX5A 1GU6A 2YYLA 3X0XA 3D9FA 3R7KA 4N5FA 2C0UA 4ZXVA 1FS8A 1IVHA 3OIBA 5K3JA 4G5EA 4OO2A 3MXLA 1FS9A 4WJYA 3HWCA 2PG0A 3AFFA 1UKWA 2RDZA 3LG1A 3NF4A 1QDBA 3FCJA 4Q17A 2ZO5A 1EGCA 3II9A 2IX6A 3S7WA 2R0NA 3AFEA 4NXLA 1RX0A 3D9DA 1SIRA 2VR0A 3EONA 2OR0A 1EGEA 3BNFA 4X28A 2CX9A 5K3HA 3P4TA 3SF6A 2YYGA 2C12A 3L1TA 4IV6A 2RFQA 3GQTA 3GM6A 3OWMA 1W07A 4M9AA 2R0MA 4L3ZA 3D1IA 4Q4UA 3PFDA 3MPIA 3BNGA 4L38A 3MDDA 3EOMA 3SXQA 2A1TA 2JBRA 3B96A 1R2JA 3M9VA 2YYMA 2ZAFA 4Q5CA 1BUCA 1WS9A 2DVLA 4L3YA 4Q0TA 3BNHA 3F29A 3RKHA 3SCEA 2RF7A 1T9GA 2FONA 2EBAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4JEK A;  4X28 C;  1FS7 A;  2E80 A;  2VIG A;  1U8V A;  2OT4 A;  2REH A;  3TOR A;  3LGQ A;  2WBI A;  4L3X A;  2YYK A;  5K3G A;  2Z1Q A;  5K3I A;  4KCF A;  3BNJ A;  1JQI A;  4ZYJ A;  3TTB A;  1SIQ A;  4IRN A;  4DOY A;  1UDY A;  4P13 A;  3MDE A;  4HR3 A;  2DDH A;  3UBR A;  3GNC A;  3MKH A;  2J7A A;  2D29 A;  3D6B A;  4Q1O A;  3UU9 A;  3X0Y A;  4RM7 A;  3D9E A;  3MPJ A;  3SWO A;  2YYJ A;  2YYI A;  2JBT A;  4U83 A;  3FO3 A;  1IS2 A;  4KTO A;  2JBS A;  2JIF A;  4Q5B A;  3OWA A;  4L1F A;  4O5M A;  3MMO A;  2E81 A;  1OAH A;  2UXW A;  3D9G A;  1EGD A;  4W9U A;  4XVX A;  2IX5 A;  1GU6 A;  2YYL A;  3X0X A;  3D9F A;  3R7K A;  4N5F A;  2C0U A;  4ZXV A;  1FS8 A;  1IVH A;  3OIB A;  5K3J A;  4G5E A;  4OO2 A;  3MXL A;  1FS9 A;  4WJY A;  3HWC A;  2PG0 A;  3AFF A;  1UKW A;  2RDZ A;  3LG1 A;  3NF4 A;  1QDB A;  3FCJ A;  4Q17 A;  2ZO5 A;  1EGC A;  3II9 A;  2IX6 A;  3S7W A;  2R0N A;  3AFE A;  4NXL A;  1RX0 A;  3D9D A;  1SIR A;  2VR0 A;  3EON A;  2OR0 A;  1EGE A;  3BNF A;  4X28 A;  2CX9 A;  5K3H A;  3P4T A;  3SF6 A;  2YYG A;  2C12 A;  3L1T A;  4IV6 A;  2RFQ A;  3GQT A;  3GM6 A;  3OWM A;  1W07 A;  4M9A A;  2R0M A;  4L3Z A;  3D1I A;  4Q4U A;  3PFD A;  3MPI A;  3BNG A;  4L38 A;  3MDD A;  3EOM A;  3SXQ A;  2A1T A;  2JBR A;  3B96 A;  1R2J A;  3M9V A;  2YYM A;  2ZAF A;  4Q5C A;  1BUC A;  1WS9 A;  2DVL A;  4L3Y A;  4Q0T A;  3BNH A;  3F29 A;  3RKH A;  3SCE A;  2RF7 A;  1T9G A;  2FON A;  2EBA A; 
#chains in the Genus database with same CATH topology
 4JEK A;  4X28 C;  1FS7 A;  2E80 A;  3N0R A;  2VIG A;  1JM6 A;  4P79 A;  5J6A A;  1U8V A;  2OT4 A;  2REH A;  2VF1 A;  3TOR A;  4HKS A;  2Q8H A;  2BU5 A;  3LGQ A;  4AKG A;  2Q8G A;  1Y8O A;  2WBI A;  2FP2 A;  4L3X A;  2YYK A;  5K3G A;  2CJ5 A;  2Z1Q A;  5K3I A;  4MPE A;  4V26 A;  2AO2 A;  2Q8I A;  4AKI A;  4KCF A;  2OJQ A;  1XFY A;  3BNJ A;  3TZ5 A;  1XFZ A;  2OEX A;  2BU8 A;  2HJN A;  5M4K A;  1JQI A;  2BU2 A;  4ZYJ A;  3TTB A;  1SIQ A;  4IRN A;  4DOY A;  1UDY A;  4JIO A;  3U33 A;  1GKZ A;  4E02 A;  3Q24 A;  1Y8P A;  2CJ6 A;  5BRK A;  2EBH X;  2ZDX A;  4P13 A;  3MDE A;  4HR3 A;  1LVC A;  2BU7 A;  4F0X A;  3DJL A;  2DDH A;  3UBR A;  2E0A A;  3GNC A;  3MKH A;  2J7A A;  3C2P A;  1X91 A;  2R02 A;  2D29 A;  3D6B A;  4Q1O A;  4MP7 A;  3UU9 A;  3X29 A;  2CJ8 A;  3X0Y A;  4RM7 A;  1XFX A;  3D9E A;  3MPJ A;  3SWO A;  1X8Z A;  2YYJ A;  2YYI A;  2XQR B;  4AI6 A;  2XS1 A;  4J1V A;  1XFU A;  1PI1 A;  2JBT A;  4U83 A;  3CRK A;  3FO3 A;  3C3L A;  4AKH A;  1IS2 A;  1GKX A;  2CJ7 A;  4KTO A;  2ZKJ A;  2JBS A;  2JIF A;  3C46 A;  4Q5B A;  3OWA A;  4L1F A;  2EBF X;  4O5M A;  3MMO A;  4FF2 A;  5B5W A;  2E81 A;  1K93 A;  5J71 A;  1OAH A;  4MPC A;  2UXW A;  3D9G A;  2AZE A;  1EGD A;  4W9U A;  4XVX A;  2IX5 A;  2PO4 A;  4G97 A;  2CJ4 A;  4E01 A;  3D2R A;  1GU6 A;  2YYL A;  3X0X A;  5GJV E;  3D9F A;  3R7K A;  1SC5 A;  4N5F A;  2C0U A;  3CRL A;  1PK0 A;  4ZXV A;  2YGW A;  3TZ2 A;  1FS8 A;  1GJV A;  2XS8 A;  1IVH A;  3OIB A;  5K3J A;  4MPN A;  4KSF A;  4G5E A;  4KS9 A;  4OO2 A;  2R05 A;  3MXL A;  1FS9 A;  2F6L A;  4WJY A;  5EZ3 A;  3HWC A;  2PG0 A;  4FZ4 A;  3AFF A;  4H7Q A;  1UKW A;  1K90 A;  2BTZ A;  2RDZ A;  4H81 A;  5B6B A;  2LFW A;  4FF4 A;  2QR4 A;  4H85 A;  3LG1 A;  3NF4 A;  1QDB A;  1RJ1 A;  1RP3 A;  5M4M A;  4E00 A;  5M4P A;  1Y8N A;  3FCJ A;  4Q17 A;  1K8T A;  1EGC A;  2ZO5 A;  3II9 A;  5GJW E;  3TZ0 A;  4DZY A;  2IX6 A;  3S7W A;  2R0N A;  3AFE A;  4NXL A;  1RX0 A;  4HKR A;  4MP2 A;  3D9D A;  1S26 A;  1SIR A;  2VR0 A;  4FF3 A;  3EON A;  2OR0 A;  1EGE A;  3BNF A;  4V25 A;  4X28 A;  2CX9 A;  5K3H A;  3P4T A;  3SF6 A;  2YYG A;  2C12 A;  3L1T A;  4IV6 A;  3VKH A;  2RFQ A;  3VKG A;  3GQT A;  3GM6 A;  2FP1 A;  3OWM A;  4JIZ A;  2Q8F A;  3CE2 A;  1W07 A;  4M9A A;  4LQQ B;  2R0M A;  3KML A;  3D1I A;  4L3Z A;  4Q4U A;  3PFD A;  3Q22 A;  3MPI A;  3BNG A;  4L38 A;  3MDD A;  2GBB A;  3VAD A;  3EOM A;  1XG2 B;  3SXQ A;  3Q0A A;  2A1T A;  2JBR A;  1XFW A;  4LQS B;  3B96 A;  1R2J A;  5B5V A;  3M9V A;  5M4N A;  1XFV A;  2YYM A;  1X90 A;  2ZAF A;  1RJ4 A;  2EC5 A;  4Q5C A;  2ZDY A;  2R03 A;  4QIC A;  1SK6 A;  2BU6 A;  1BUC A;  1WS9 A;  2DVL A;  4L3Y A;  4Q0T A;  3BNH A;  2PNR A;  3F29 A;  4KSA A;  3RKH A;  5BRM A;  1R3B A;  3TZ4 A;  1Y0V A;  4FF1 A;  3SCE A;  2RF7 A;  1T9G A;  2FON A;  3Q23 A;  2OEV A;  2EBA A; 
#chains in the Genus database with same CATH homology
 4JEK A;  4X28 C;  1FS7 A;  2E80 A;  2VIG A;  1U8V A;  2OT4 A;  2REH A;  3TOR A;  3LGQ A;  2WBI A;  4L3X A;  2YYK A;  5K3G A;  2Z1Q A;  5K3I A;  4KCF A;  3BNJ A;  1JQI A;  4ZYJ A;  3TTB A;  1SIQ A;  4IRN A;  4DOY A;  1UDY A;  4P13 A;  3MDE A;  4HR3 A;  2DDH A;  3UBR A;  3GNC A;  3MKH A;  2J7A A;  2D29 A;  3D6B A;  4Q1O A;  3UU9 A;  3X0Y A;  4RM7 A;  3D9E A;  3MPJ A;  3SWO A;  2YYJ A;  2YYI A;  2JBT A;  4U83 A;  3FO3 A;  1IS2 A;  4KTO A;  2JBS A;  2JIF A;  4Q5B A;  3OWA A;  4L1F A;  4O5M A;  3MMO A;  2E81 A;  1OAH A;  2UXW A;  3D9G A;  1EGD A;  4W9U A;  4XVX A;  2IX5 A;  1GU6 A;  2YYL A;  3X0X A;  3D9F A;  3R7K A;  4N5F A;  2C0U A;  4ZXV A;  1FS8 A;  1IVH A;  3OIB A;  5K3J A;  4G5E A;  4OO2 A;  3MXL A;  1FS9 A;  4WJY A;  3HWC A;  2PG0 A;  3AFF A;  1UKW A;  2RDZ A;  3LG1 A;  3NF4 A;  1QDB A;  3FCJ A;  4Q17 A;  2ZO5 A;  1EGC A;  3II9 A;  2IX6 A;  3S7W A;  2R0N A;  3AFE A;  4NXL A;  1RX0 A;  3D9D A;  1SIR A;  2VR0 A;  3EON A;  2OR0 A;  1EGE A;  3BNF A;  4X28 A;  2CX9 A;  5K3H A;  3P4T A;  3SF6 A;  2YYG A;  2C12 A;  3L1T A;  4IV6 A;  2RFQ A;  3GQT A;  3GM6 A;  3OWM A;  1W07 A;  4M9A A;  2R0M A;  4L3Z A;  3D1I A;  4Q4U A;  3PFD A;  3MPI A;  3BNG A;  4L38 A;  3MDD A;  3EOM A;  3SXQ A;  2A1T A;  2JBR A;  3B96 A;  1R2J A;  3M9V A;  2YYM A;  2ZAF A;  4Q5C A;  1BUC A;  1WS9 A;  2DVL A;  4L3Y A;  4Q0T A;  3BNH A;  3F29 A;  3RKH A;  3SCE A;  2RF7 A;  1T9G A;  2FON A;  2EBA A; 
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