3MPI | Genus

Total Genus 148

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	148
sequence length	391
structure length	391
Chain Sequence	MDFNLSKELQMLQKEVRNFVNKKIVPFADQWDNENHFPYEEAVRPMGELGFFGTVIPEEYGGEGMDQGWLAAMIVTEEIARGSSALRVQLNMEVLGCAYTILTYGSEALKKKYVPKLSSAEFLGGFGITEPDAGSDVMAMSSTAEDKGDHWLLNGSKTWISNAAQADVLIYYAYTDKAAGSRGLSAFVIEPRNFPGIKTSNLEKLGSHASPTGELFLDNVKVPKENILGKPGDGARIVFGSLNHTRLSAAAGGVGLAQACLDAAIKYCNERRQFGKPIGDFQMNQDMIAQMAVEVEAARLLAYKAAAAKDEGRLNNGLDVAMAKYAAGEAVSKCANYAMRILGAYGYSTEYPVARFYRDAPTYYMVEGSANICKMIIALDQLGVRKANRKG

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Oxidoreductase
source organism	Desulfococcus multivorans
publication title	Structural basis for promoting and preventing decarboxylation in glutaryl-coenzyme a dehydrogenases. pubmed doi rcsb
molecule keywords	Glutaryl-CoA dehydrogenase
total genus	148
structure length	391
sequence length	391
chains with identical sequence	B, C, D
ec nomenclature	ec 1.3.99.32: Glutaryl-CoA dehydrogenase (acceptor).
pdb deposition date	2010-04-27

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00441	Acyl-CoA_dh_1	Acyl-CoA dehydrogenase, C-terminal domain
A	PF02770	Acyl-CoA_dh_M	Acyl-CoA dehydrogenase, middle domain
A	PF02771	Acyl-CoA_dh_N	Acyl-CoA dehydrogenase, N-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.540.10	Mainly Alpha	Orthogonal Bundle	Butyryl-Coa Dehydrogenase, subunit A; domain 1	Acyl-CoA dehydrogenase/oxidase, N-terminal domain	3mpiA01
1.20.140.10	Mainly Alpha	Up-down Bundle	Butyryl-CoA Dehydrogenase, subunit A; domain 3	Butyryl-CoA Dehydrogenase, subunit A, domain 3	3mpiA03
2.40.110.10	Mainly Beta	Beta Barrel	Butyryl-CoA Dehydrogenase, subunit A; domain 2	Butyryl-CoA Dehydrogenase, subunit A, domain 2	3mpiA02

3MKHA 2R0MA 2JBTA 3D6BA 3NF4A 1QDBA 3FO3A 3BNHA 3FCJA 1FS9A 2RF7A 3D9FA 2REHA 3LG1A 2UXWA 4L1FA 4Q4UA 2OT4A 4W9UA 4Q0TA 2YYKA 3HWCA 3L1TA 4KCFA 1U8VA 2VR0A 4XVXA 3OWAA 3MDDA 2YYGA 3MDEA 2PG0A 2WBIA 4IRNA 4RM7A 2JBSA 1FS8A 1FS7A 3AFFA 4L3XA 3PFDA 5K3JA 2CX9A 4ZYJA 4OO2A 2YYIA 3D9DA 2C0UA 3MPIA 4X28C 3TORA 3RKHA 2DVLA 2YYMA 2ZO5A 4Q5CA 1BUCA 4Q17A 1T9GA 2JBRA 3EOMA 4Q1OA 4L3YA 2E81A 3EONA 3R7KA 3LGQA 3S7WA 1JQIA 1SIQA 1EGCA 1IS2A 4M9AA 4DOYA 4KTOA 3OWMA 1GU6A 4JEKA 2ZAFA 3MMOA 2VIGA 2FONA 5K3HA 3D9GA 2J7AA 5K3IA 3GQTA 3X0YA 3GNCA 3BNGA 4NXLA 4N5FA 5K3GA 2A1TA 1OAHA 3TTBA 3UU9A 3X0XA 2IX5A 1EGEA 3BNFA 1WS9A 3MXLA 3M9VA 4HR3A 3SCEA 3SWOA 4U83A 2IX6A 2RDZA 2DDHA 3UBRA 1RX0A 3D9EA 1UDYA 1EGDA 1UKWA 1SIRA 2C12A 2RFQA 4L3ZA 4X28A 4L38A 4Q5BA 4IV6A 2R0NA 1IVHA 2E80A 3D1IA 2D29A 1W07A 3II9A 3OIBA 3B96A 4G5EA 3SF6A 3P4TA 2OR0A 3MPJA 1R2JA 3BNJA 4O5MA 4P13A 2EBAA 2Z1QA 2YYJA 3SXQA 3F29A 2YYLA 3GM6A 4WJYA 4ZXVA 3AFEA 2JIFA
chains in the Genus database with same CATH superfamily

2CJ4A 3MKHA 2R0MA 2XQRB 4FF4A 2JBTA 4KS9A 3D6BA 3NF4A 1SC5A 3Q22A 1QDBA 3FO3A 2FP2A 3BNHA 1SK6A 4KSAA 2AZEA 4V26A 2XS1A 2R02A 2ZKJA 3FCJA 2OJQA 1FS9A 2RF7A 3Q23A 2CJ7A 3D9FA 1XFVA 2REHA 3LG1A 1RP3A 4H7QA 2UXWA 4L1FA 4Q4UA 5GJWE 2OT4A 3U33A 1Y8OA 4W9UA 4DZYA 1JM6A 1XFXA 4Q0TA 1X91A 2YYKA 5M4KA 2ZDYA 3HWCA 3L1TA 4KCFA 1U8VA 1GJVA 1K8TA 2AO2A 2VR0A 1X8ZA 5EZ3A 4XVXA 1XFUA 3OWAA 1XG2B 1XFYA 3MDDA 2YYGA 4E00A 4H85A 4MP7A 3MDEA 4MP2A 2PG0A 2WBIA 4IRNA 4RM7A 1XFZA 2JBSA 3Q0AA 1FS8A 1FS7A 3AFFA 4L3XA 2Q8FA 4G97A 4JIOA 3PFDA 5K3JA 2CX9A 4ZYJA 4OO2A 4F0XA 2YYIA 3D9DA 2C0UA 3MPIA 4X28C 1K93A 3TORA 3RKHA 2DVLA 2YYMA 2ZO5A 2CJ8A 4Q5CA 2Q8HA 3Q24A 3VKHA 5B5WA 4FF1A 2R05A 1BUCA 4JIZA 4Q17A 1T9GA 2JBRA 3EOMA 4Q1OA 5B5VA 4AKGA 2BU8A 2BU5A 2E81A 4L3YA 3EONA 3R7KA 2CJ5A 3LGQA 3S7WA 2BU6A 3VKGA 3C3LA 1JQIA 4E02A 3DJLA 1SIQA 1EGCA 1IS2A 4M9AA 4DOYA 4E01A 1RJ1A 2CJ6A 4FZ4A 2OEXA 2OEVA 3D2RA 2HJNA 4J1VA 4KTOA 2GBBA 3OWMA 1GU6A 5B6BA 4JEKA 4AKIA 2ZAFA 1GKXA 3MMOA 2VIGA 2YGWA 2FONA 5K3HA 3D9GA 2J7AA 5K3IA 4H81A 2Q8IA 3GQTA 2LFWA 3X29A 3X0YA 3GNCA 1PK0A 3BNGA 4NXLA 4P79A 4QICA 5BRMA 5M4NA 4AKHA 4N5FA 5K3GA 2A1TA 1OAHA 4MPCA 3TTBA 2ZDXA 3TZ0A 3C2PA 3UU9A 3X0XA 1GKZA 2IX5A 1EGEA 1Y8PA 1WS9A 3MXLA 3BNFA 3M9VA 4HR3A 2BU7A 2E0AA 4FF2A 2BU2A 3SCEA 3SWOA 4U83A 2IX6A 2RDZA 3TZ4A 2DDHA 2EC5A 2FP1A 3CE2A 2XS8A 3UBRA 1RX0A 3D9EA 1UDYA 1S26A 5M4PA 1EGDA 1UKWA 1SIRA 2C12A 1K90A 2RFQA 3KMLA 4L3ZA 3TZ2A 4X28A 3CRLA 4L38A 4Q5BA 4IV6A 2R0NA 1IVHA 4HKSA 2E80A 4KSFA 4FF3A 3D1IA 1RJ4A 2D29A 1W07A 3II9A 4LQSB 3OIBA 3N0RA 1X90A 4MPNA 3VADA 3B96A 5J6AA 5GJVE 5BRKA 1XFWA 2EBHX 3SF6A 3P4TA 2R03A 2OR0A 2VF1A 4G5EA 2BTZA 3MPJA 4LQQB 1R2JA 3BNJA 3TZ5A 4O5MA 1R3BA 4AI6A 4P13A 2EBAA 3C46A 4V25A 2Z1QA 1Y8NA 2YYJA 4HKRA 1Y0VA 2EBFX 3CRKA 3SXQA 3F29A 2QR4A 5M4MA 2YYLA 2PO4A 3GM6A 2Q8GA 4MPEA 1PI1A 4WJYA 2PNRA 4ZXVA 5J71A 2F6LA 3AFEA 1LVCA 2JIFA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3MKH A;  2R0M A;  2JBT A;  3D6B A;  3NF4 A;  1QDB A;  3FO3 A;  3BNH A;  3FCJ A;  1FS9 A;  2RF7 A;  3D9F A;  2REH A;  3LG1 A;  2UXW A;  4L1F A;  4Q4U A;  2OT4 A;  4W9U A;  4Q0T A;  2YYK A;  3HWC A;  3L1T A;  4KCF A;  1U8V A;  2VR0 A;  4XVX A;  3OWA A;  3MDD A;  2YYG A;  3MDE A;  2PG0 A;  2WBI A;  4IRN A;  4RM7 A;  2JBS A;  1FS8 A;  1FS7 A;  3AFF A;  4L3X A;  3PFD A;  5K3J A;  2CX9 A;  4ZYJ A;  4OO2 A;  2YYI A;  3D9D A;  2C0U A;  3MPI A;  4X28 C;  3TOR A;  3RKH A;  2DVL A;  2YYM A;  2ZO5 A;  4Q5C A;  1BUC A;  4Q17 A;  1T9G A;  2JBR A;  3EOM A;  4Q1O A;  4L3Y A;  2E81 A;  3EON A;  3R7K A;  3LGQ A;  3S7W A;  1JQI A;  1SIQ A;  1EGC A;  1IS2 A;  4M9A A;  4DOY A;  4KTO A;  3OWM A;  1GU6 A;  4JEK A;  2ZAF A;  3MMO A;  2VIG A;  2FON A;  5K3H A;  3D9G A;  2J7A A;  5K3I A;  3GQT A;  3X0Y A;  3GNC A;  3BNG A;  4NXL A;  4N5F A;  5K3G A;  2A1T A;  1OAH A;  3TTB A;  3UU9 A;  3X0X A;  2IX5 A;  1EGE A;  3BNF A;  1WS9 A;  3MXL A;  3M9V A;  4HR3 A;  3SCE A;  3SWO A;  4U83 A;  2IX6 A;  2RDZ A;  2DDH A;  3UBR A;  1RX0 A;  3D9E A;  1UDY A;  1EGD A;  1UKW A;  1SIR A;  2C12 A;  2RFQ A;  4L3Z A;  4X28 A;  4L38 A;  4Q5B A;  4IV6 A;  2R0N A;  1IVH A;  2E80 A;  3D1I A;  2D29 A;  1W07 A;  3II9 A;  3OIB A;  3B96 A;  4G5E A;  3SF6 A;  3P4T A;  2OR0 A;  3MPJ A;  1R2J A;  3BNJ A;  4O5M A;  4P13 A;  2EBA A;  2Z1Q A;  2YYJ A;  3SXQ A;  3F29 A;  2YYL A;  3GM6 A;  4WJY A;  4ZXV A;  3AFE A;  2JIF A; 
#chains in the Genus database with same CATH topology
 2CJ4 A;  3MKH A;  2R0M A;  2XQR B;  4FF4 A;  2JBT A;  4KS9 A;  3D6B A;  3NF4 A;  1SC5 A;  3Q22 A;  1QDB A;  3FO3 A;  2FP2 A;  3BNH A;  1SK6 A;  4KSA A;  2AZE A;  4V26 A;  2XS1 A;  2R02 A;  2ZKJ A;  3FCJ A;  2OJQ A;  1FS9 A;  2RF7 A;  3Q23 A;  2CJ7 A;  3D9F A;  1XFV A;  2REH A;  3LG1 A;  1RP3 A;  4H7Q A;  2UXW A;  4L1F A;  4Q4U A;  5GJW E;  2OT4 A;  3U33 A;  1Y8O A;  4W9U A;  4DZY A;  1JM6 A;  1XFX A;  4Q0T A;  1X91 A;  2YYK A;  5M4K A;  2ZDY A;  3HWC A;  3L1T A;  4KCF A;  1U8V A;  1GJV A;  1K8T A;  2AO2 A;  2VR0 A;  1X8Z A;  5EZ3 A;  4XVX A;  1XFU A;  3OWA A;  1XG2 B;  1XFY A;  3MDD A;  2YYG A;  4E00 A;  4H85 A;  4MP7 A;  3MDE A;  4MP2 A;  2PG0 A;  2WBI A;  4IRN A;  4RM7 A;  1XFZ A;  2JBS A;  3Q0A A;  1FS8 A;  1FS7 A;  3AFF A;  4L3X A;  2Q8F A;  4G97 A;  4JIO A;  3PFD A;  5K3J A;  2CX9 A;  4ZYJ A;  4OO2 A;  4F0X A;  2YYI A;  3D9D A;  2C0U A;  3MPI A;  4X28 C;  1K93 A;  3TOR A;  3RKH A;  2DVL A;  2YYM A;  2ZO5 A;  2CJ8 A;  4Q5C A;  2Q8H A;  3Q24 A;  3VKH A;  5B5W A;  4FF1 A;  2R05 A;  1BUC A;  4JIZ A;  4Q17 A;  1T9G A;  2JBR A;  3EOM A;  4Q1O A;  5B5V A;  4AKG A;  2BU8 A;  2BU5 A;  2E81 A;  4L3Y A;  3EON A;  3R7K A;  2CJ5 A;  3LGQ A;  3S7W A;  2BU6 A;  3VKG A;  3C3L A;  1JQI A;  4E02 A;  3DJL A;  1SIQ A;  1EGC A;  1IS2 A;  4M9A A;  4DOY A;  4E01 A;  1RJ1 A;  2CJ6 A;  4FZ4 A;  2OEX A;  2OEV A;  3D2R A;  2HJN A;  4J1V A;  4KTO A;  2GBB A;  3OWM A;  1GU6 A;  5B6B A;  4JEK A;  4AKI A;  2ZAF A;  1GKX A;  3MMO A;  2VIG A;  2YGW A;  2FON A;  5K3H A;  3D9G A;  2J7A A;  5K3I A;  4H81 A;  2Q8I A;  3GQT A;  2LFW A;  3X29 A;  3X0Y A;  3GNC A;  1PK0 A;  3BNG A;  4NXL A;  4P79 A;  4QIC A;  5BRM A;  5M4N A;  4AKH A;  4N5F A;  5K3G A;  2A1T A;  1OAH A;  4MPC A;  3TTB A;  2ZDX A;  3TZ0 A;  3C2P A;  3UU9 A;  3X0X A;  1GKZ A;  2IX5 A;  1EGE A;  1Y8P A;  1WS9 A;  3MXL A;  3BNF A;  3M9V A;  4HR3 A;  2BU7 A;  2E0A A;  4FF2 A;  2BU2 A;  3SCE A;  3SWO A;  4U83 A;  2IX6 A;  2RDZ A;  3TZ4 A;  2DDH A;  2EC5 A;  2FP1 A;  3CE2 A;  2XS8 A;  3UBR A;  1RX0 A;  3D9E A;  1UDY A;  1S26 A;  5M4P A;  1EGD A;  1UKW A;  1SIR A;  2C12 A;  1K90 A;  2RFQ A;  3KML A;  4L3Z A;  3TZ2 A;  4X28 A;  3CRL A;  4L38 A;  4Q5B A;  4IV6 A;  2R0N A;  1IVH A;  4HKS A;  2E80 A;  4KSF A;  4FF3 A;  3D1I A;  1RJ4 A;  2D29 A;  1W07 A;  3II9 A;  4LQS B;  3OIB A;  3N0R A;  1X90 A;  4MPN A;  3VAD A;  3B96 A;  5J6A A;  5GJV E;  5BRK A;  1XFW A;  2EBH X;  3SF6 A;  3P4T A;  2R03 A;  2OR0 A;  2VF1 A;  4G5E A;  2BTZ A;  3MPJ A;  4LQQ B;  1R2J A;  3BNJ A;  3TZ5 A;  4O5M A;  1R3B A;  4AI6 A;  4P13 A;  2EBA A;  3C46 A;  4V25 A;  2Z1Q A;  1Y8N A;  2YYJ A;  4HKR A;  1Y0V A;  2EBF X;  3CRK A;  3SXQ A;  3F29 A;  2QR4 A;  5M4M A;  2YYL A;  2PO4 A;  3GM6 A;  2Q8G A;  4MPE A;  1PI1 A;  4WJY A;  2PNR A;  4ZXV A;  5J71 A;  2F6L A;  3AFE A;  1LVC A;  2JIF A; 
#chains in the Genus database with same CATH homology
 3MKH A;  2R0M A;  2JBT A;  3D6B A;  3NF4 A;  1QDB A;  3FO3 A;  3BNH A;  3FCJ A;  1FS9 A;  2RF7 A;  3D9F A;  2REH A;  3LG1 A;  2UXW A;  4L1F A;  4Q4U A;  2OT4 A;  4W9U A;  4Q0T A;  2YYK A;  3HWC A;  3L1T A;  4KCF A;  1U8V A;  2VR0 A;  4XVX A;  3OWA A;  3MDD A;  2YYG A;  3MDE A;  2PG0 A;  2WBI A;  4IRN A;  4RM7 A;  2JBS A;  1FS8 A;  1FS7 A;  3AFF A;  4L3X A;  3PFD A;  5K3J A;  2CX9 A;  4ZYJ A;  4OO2 A;  2YYI A;  3D9D A;  2C0U A;  3MPI A;  4X28 C;  3TOR A;  3RKH A;  2DVL A;  2YYM A;  2ZO5 A;  4Q5C A;  1BUC A;  4Q17 A;  1T9G A;  2JBR A;  3EOM A;  4Q1O A;  4L3Y A;  2E81 A;  3EON A;  3R7K A;  3LGQ A;  3S7W A;  1JQI A;  1SIQ A;  1EGC A;  1IS2 A;  4M9A A;  4DOY A;  4KTO A;  3OWM A;  1GU6 A;  4JEK A;  2ZAF A;  3MMO A;  2VIG A;  2FON A;  5K3H A;  3D9G A;  2J7A A;  5K3I A;  3GQT A;  3X0Y A;  3GNC A;  3BNG A;  4NXL A;  4N5F A;  5K3G A;  2A1T A;  1OAH A;  3TTB A;  3UU9 A;  3X0X A;  2IX5 A;  1EGE A;  3BNF A;  1WS9 A;  3MXL A;  3M9V A;  4HR3 A;  3SCE A;  3SWO A;  4U83 A;  2IX6 A;  2RDZ A;  2DDH A;  3UBR A;  1RX0 A;  3D9E A;  1UDY A;  1EGD A;  1UKW A;  1SIR A;  2C12 A;  2RFQ A;  4L3Z A;  4X28 A;  4L38 A;  4Q5B A;  4IV6 A;  2R0N A;  1IVH A;  2E80 A;  3D1I A;  2D29 A;  1W07 A;  3II9 A;  3OIB A;  3B96 A;  4G5E A;  3SF6 A;  3P4T A;  2OR0 A;  3MPJ A;  1R2J A;  3BNJ A;  4O5M A;  4P13 A;  2EBA A;  2Z1Q A;  2YYJ A;  3SXQ A;  3F29 A;  2YYL A;  3GM6 A;  4WJY A;  4ZXV A;  3AFE A;  2JIF A;

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similar chains in the Genus database (?% sequence similarity)

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#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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3MPIA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations