3NF4A

Crystal structure of acyl-coa dehydrogenase from mycobacterium thermoresistibile bound to flavin adenine dinucleotide
Total Genus 127
50100150200250300350020406080100120
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
127
sequence length
378
structure length
369
Chain Sequence
MAVDRLLPSQEAAELIELTREIADKVLDPIVDRHEKDETYPEGVFEQLGAAGLLSLPQPEEWGGGGQPYEVYLQVLEEIAARWASVAVAVSVHSLSSHPLLVFGTEEQKKRWLPGMLSGEQIGAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKSWITHGGKADFYTLFARTGSRGVSCFLVPADQPGLSFGKPEEKMGLHAVPTTSAFYDNARIDADRRIGEEGQGLQIAFSALDSGRLGIAAVATGLAQAALDEAVAYANEKIIDHGLGFLLADMAAAVATARATYLDAARRRDQGRPYSQQASIAKLTATDAAMKVTTDAVQVFGGVGYTRDYRVERYMREAKIMQIFEGTNQIQRLVIARGLT
5010015020025030035035030025020015010050
020406080100120Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (14-31)AH9 (317-342)AH2 (34-41)AH4 (73-86)S3 (153-164)EMPTYTII1 (45-48)AH3 (48-55)3H1 (64-66)AH6 (110-121)TI2 (56-59)TI3 (59-62)TIV1 (57-60)AH5 (88-107)TIV2 (122-125)TIV5 (166-169)AH7 (234-271)TII3 (163-166)TII4 (165-168)S1 (127-130)TVIII1 (137-140)TI5 (139-142)TIV4 (136-139)TI4 (133-136)S4 (171-177)TI6 (140-143)TII2 (150-153)S2 (146-150)TI8 (224-227)S7 (213-224)S5 (185-191)TIV6 (179-184)S8 (228-229)S6 (197-202)3H2 (344-347)TVIII2 (209-212)TIV8 (278-281)TIV9 (279-282)AH8 (285-312)TI10 (348-351)TIV12 (365-368)TI1 (31-34)TI7 (191-194)TII6 (231-234)TIV10 (281-285)TIV13 (366-369)AH10 (352-364)Updating...
connected with : NaN
molecule tags Oxidoreductase
source organism Mycobacterium thermoresistibile
publication title Increasing the structural coverage of tuberculosis drug targets.
pubmed doi rcsb
molecule keywords acyl-CoA dehydrogenase
total genus 127
structure length 369
sequence length 378
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-06-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 3nf4A01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 3nf4A03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 3nf4A02
4U83A 3GQTA 3MDEA 4ZXVA 3S7WA 2VIGA 1T9GA 1UDYA 1U8VA 2FONA 1JQIA 3OWMA 4L38A 2EBAA 3EONA 3D6BA 2JBSA 3OIBA 1EGCA 1GU6A 2WBIA 3D1IA 3OWAA 2OR0A 2C0UA 4Q1OA 3MPJA 3X0XA 5K3GA 1SIRA 4XVXA 4Q4UA 2E80A 4X28C 5K3HA 2YYJA 2YYKA 2YYLA 3GM6A 1IVHA 3TORA 3D9FA 3MXLA 4L3XA 4KCFA 2CX9A 1SIQA 2J7AA 1EGDA 1QDBA 4P13A 3RKHA 3FO3A 1RX0A 2IX6A 4M9AA 3M9VA 3D9EA 4JEKA 4KTOA 4IRNA 1FS7A 2IX5A 4Q5CA 3SF6A 3P4TA 4O5MA 4Q5BA 3II9A 2REHA 1FS9A 2ZO5A 3D9DA 3BNHA 2RFQA 2D29A 3X0YA 2DVLA 4IV6A 2ZAFA 3MKHA 2R0MA 3EOMA 2R0NA 1IS2A 4L3YA 4Q0TA 3SCEA 4N5FA 3F29A 3UU9A 3FCJA 3LGQA 3PFDA 2A1TA 4Q17A 2JBRA 3B96A 2DDHA 2VR0A 2C12A 4RM7A 3UBRA 3AFFA 3D9GA 5K3IA 1W07A 3MDDA 1FS8A 4DOYA 4NXLA 2UXWA 3HWCA 3BNJA 3L1TA 2E81A 4G5EA 1WS9A 3MPIA 1OAHA 3GNCA 4OO2A 5K3JA 4W9UA 1R2JA 3AFEA 4X28A 3NF4A 3R7KA 2OT4A 4ZYJA 4L3ZA 3LG1A 4WJYA 1EGEA 3MMOA 4L1FA 3BNFA 2JBTA 1UKWA 2JIFA 3SXQA 2YYMA 2YYGA 3BNGA 2Z1QA 3SWOA 2RF7A 2YYIA 2PG0A 2RDZA 1BUCA 4HR3A 3TTBA
chains in the Genus database with same CATH superfamily
4U83A 3GQTA 3MDEA 4ZXVA 3S7WA 2VIGA 4KSFA 1T9GA 1UDYA 1JM6A 1U8VA 4AKHA 2FONA 1JQIA 3OWMA 5BRMA 4JIOA 4L38A 4MP2A 4H7QA 3CRKA 2EBAA 3EONA 4V25A 4H85A 4AKGA 3D6BA 2JBSA 3OIBA 1XFVA 1XFWA 2AZEA 1GKXA 4MPEA 4FF2A 1EGCA 1K8TA 1GU6A 2WBIA 3D1IA 2XS1A 2CJ8A 4F0XA 3OWAA 2Q8FA 2OR0A 3C46A 4FF1A 4G97A 4J1VA 3VKGA 2C0UA 4MPNA 1RJ4A 4Q1OA 3MPJA 3X0XA 5K3GA 2EBHX 1PK0A 3TZ4A 1SIRA 4XVXA 2VF1A 4Q4UA 3Q23A 2E80A 3DJLA 4X28C 5K3HA 2YYJA 1X91A 5M4KA 2YYKA 2YYLA 5B5WA 3GM6A 1IVHA 2FP2A 3D9FA 3MXLA 4FZ4A 4JIZA 4QICA 3TORA 2BU6A 4L3XA 4KCFA 2CX9A 1X8ZA 1SIQA 2J7AA 2BTZA 3TZ5A 1EGDA 2EC5A 1QDBA 2PO4A 1GKZA 4H81A 3X29A 4P13A 1R3BA 2ZDYA 3KMLA 3RKHA 3FO3A 4E02A 1RX0A 2IX6A 3D2RA 4M9AA 3M9VA 3D9EA 2BU8A 4AI6A 4JEKA 4LQQB 5M4MA 4KTOA 4IRNA 2PNRA 4MPCA 2Q8IA 5J71A 1FS7A 2LFWA 2IX5A 2Q8HA 2Q8GA 4Q5CA 3SF6A 1Y0VA 3P4TA 3Q0AA 4O5MA 4Q5BA 4V26A 3II9A 1XFXA 2REHA 1FS9A 2ZO5A 3TZ0A 3D9DA 4P79A 1SC5A 4KSAA 3BNHA 4KS9A 2RFQA 1XFYA 2D29A 3X0YA 3CE2A 5M4PA 2DVLA 4IV6A 3CRLA 3Q24A 5GJWE 2ZAFA 2YGWA 1XG2B 4HKSA 3MKHA 2R0MA 3EOMA 2R02A 3N0RA 1XFUA 4LQSB 2R0NA 2F6LA 1IS2A 4L3YA 4Q0TA 4HKRA 3SCEA 1PI1A 2ZDXA 4N5FA 3F29A 3UU9A 3FCJA 1RJ1A 3LGQA 3PFDA 2EBFX 2BU2A 4FF3A 2A1TA 2CJ5A 2XQRB 2JBRA 3B96A 2QR4A 2ZKJA 4Q17A 2DDHA 2VR0A 1SK6A 2C12A 1X90A 4E01A 4RM7A 1LVCA 2BU5A 3UBRA 2GBBA 5M4NA 3AFFA 3D9GA 5K3IA 2OEVA 1W07A 3MDDA 4FF4A 1FS8A 4DOYA 4NXLA 2UXWA 3HWCA 4AKIA 3BNJA 2FP1A 3L1TA 2E81A 1K90A 4G5EA 1WS9A 3MPIA 3C2PA 2HJNA 1OAHA 3GNCA 4OO2A 5GJVE 1K93A 5K3JA 1Y8NA 4W9UA 1R2JA 3AFEA 2CJ4A 4X28A 3NF4A 3R7KA 2OT4A 4ZYJA 1Y8PA 2CJ7A 3C3LA 4L3ZA 2BU7A 3LG1A 5B5VA 4WJYA 1EGEA 3MMOA 3TZ2A 4L1FA 1GJVA 3BNFA 2R03A 4MP7A 1Y8OA 3U33A 2JBTA 4DZYA 1UKWA 2XS8A 2CJ6A 2AO2A 1XFZA 2OJQA 3VADA 2JIFA 5BRKA 5J6AA 2OEXA 3SXQA 2YYMA 2YYGA 3BNGA 1S26A 4E00A 2R05A 5B6BA 3VKHA 5EZ3A 2Z1QA 2E0AA 1RP3A 3SWOA 2RF7A 2YYIA 3Q22A 2PG0A 2RDZA 1BUCA 4HR3A 3TTBA
chains in the Genus database with same CATH topology
4U83A 3GQTA 3MDEA 4ZXVA 3S7WA 2VIGA 1T9GA 1UDYA 1U8VA 2FONA 1JQIA 3OWMA 4L38A 2EBAA 3EONA 3D6BA 2JBSA 3OIBA 1EGCA 1GU6A 2WBIA 3D1IA 3OWAA 2OR0A 2C0UA 4Q1OA 3MPJA 3X0XA 5K3GA 1SIRA 4XVXA 4Q4UA 2E80A 4X28C 5K3HA 2YYJA 2YYKA 2YYLA 3GM6A 1IVHA 3TORA 3D9FA 3MXLA 4L3XA 4KCFA 2CX9A 1SIQA 2J7AA 1EGDA 1QDBA 4P13A 3RKHA 3FO3A 1RX0A 2IX6A 4M9AA 3M9VA 3D9EA 4JEKA 4KTOA 4IRNA 1FS7A 2IX5A 4Q5CA 3SF6A 3P4TA 4O5MA 4Q5BA 3II9A 2REHA 1FS9A 2ZO5A 3D9DA 3BNHA 2RFQA 2D29A 3X0YA 2DVLA 4IV6A 2ZAFA 3MKHA 2R0MA 3EOMA 2R0NA 1IS2A 4L3YA 4Q0TA 3SCEA 4N5FA 3F29A 3UU9A 3FCJA 3LGQA 3PFDA 2A1TA 4Q17A 2JBRA 3B96A 2DDHA 2VR0A 2C12A 4RM7A 3UBRA 3AFFA 3D9GA 5K3IA 1W07A 3MDDA 1FS8A 4DOYA 4NXLA 2UXWA 3HWCA 3BNJA 3L1TA 2E81A 4G5EA 1WS9A 3MPIA 1OAHA 3GNCA 4OO2A 5K3JA 4W9UA 1R2JA 3AFEA 4X28A 3NF4A 3R7KA 2OT4A 4ZYJA 4L3ZA 3LG1A 4WJYA 1EGEA 3MMOA 4L1FA 3BNFA 2JBTA 1UKWA 2JIFA 3SXQA 2YYMA 2YYGA 3BNGA 2Z1QA 3SWOA 2RF7A 2YYIA 2PG0A 2RDZA 1BUCA 4HR3A 3TTBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4U83 A;  3GQT A;  3MDE A;  4ZXV A;  3S7W A;  2VIG A;  1T9G A;  1UDY A;  1U8V A;  2FON A;  1JQI A;  3OWM A;  4L38 A;  2EBA A;  3EON A;  3D6B A;  2JBS A;  3OIB A;  1EGC A;  1GU6 A;  2WBI A;  3D1I A;  3OWA A;  2OR0 A;  2C0U A;  4Q1O A;  3MPJ A;  3X0X A;  5K3G A;  1SIR A;  4XVX A;  4Q4U A;  2E80 A;  4X28 C;  5K3H A;  2YYJ A;  2YYK A;  2YYL A;  3GM6 A;  1IVH A;  3TOR A;  3D9F A;  3MXL A;  4L3X A;  4KCF A;  2CX9 A;  1SIQ A;  2J7A A;  1EGD A;  1QDB A;  4P13 A;  3RKH A;  3FO3 A;  1RX0 A;  2IX6 A;  4M9A A;  3M9V A;  3D9E A;  4JEK A;  4KTO A;  4IRN A;  1FS7 A;  2IX5 A;  4Q5C A;  3SF6 A;  3P4T A;  4O5M A;  4Q5B A;  3II9 A;  2REH A;  1FS9 A;  2ZO5 A;  3D9D A;  3BNH A;  2RFQ A;  2D29 A;  3X0Y A;  2DVL A;  4IV6 A;  2ZAF A;  3MKH A;  2R0M A;  3EOM A;  2R0N A;  1IS2 A;  4L3Y A;  4Q0T A;  3SCE A;  4N5F A;  3F29 A;  3UU9 A;  3FCJ A;  3LGQ A;  3PFD A;  2A1T A;  4Q17 A;  2JBR A;  3B96 A;  2DDH A;  2VR0 A;  2C12 A;  4RM7 A;  3UBR A;  3AFF A;  3D9G A;  5K3I A;  1W07 A;  3MDD A;  1FS8 A;  4DOY A;  4NXL A;  2UXW A;  3HWC A;  3BNJ A;  3L1T A;  2E81 A;  4G5E A;  1WS9 A;  3MPI A;  1OAH A;  3GNC A;  4OO2 A;  5K3J A;  4W9U A;  1R2J A;  3AFE A;  4X28 A;  3NF4 A;  3R7K A;  2OT4 A;  4ZYJ A;  4L3Z A;  3LG1 A;  4WJY A;  1EGE A;  3MMO A;  4L1F A;  3BNF A;  2JBT A;  1UKW A;  2JIF A;  3SXQ A;  2YYM A;  2YYG A;  3BNG A;  2Z1Q A;  3SWO A;  2RF7 A;  2YYI A;  2PG0 A;  2RDZ A;  1BUC A;  4HR3 A;  3TTB A; 
#chains in the Genus database with same CATH topology
 4U83 A;  3GQT A;  3MDE A;  4ZXV A;  3S7W A;  2VIG A;  4KSF A;  1T9G A;  1UDY A;  1JM6 A;  1U8V A;  4AKH A;  2FON A;  1JQI A;  3OWM A;  5BRM A;  4JIO A;  4L38 A;  4MP2 A;  4H7Q A;  3CRK A;  2EBA A;  3EON A;  4V25 A;  4H85 A;  4AKG A;  3D6B A;  2JBS A;  3OIB A;  1XFV A;  1XFW A;  2AZE A;  1GKX A;  4MPE A;  4FF2 A;  1EGC A;  1K8T A;  1GU6 A;  2WBI A;  3D1I A;  2XS1 A;  2CJ8 A;  4F0X A;  3OWA A;  2Q8F A;  2OR0 A;  3C46 A;  4FF1 A;  4G97 A;  4J1V A;  3VKG A;  2C0U A;  4MPN A;  1RJ4 A;  4Q1O A;  3MPJ A;  3X0X A;  5K3G A;  2EBH X;  1PK0 A;  3TZ4 A;  1SIR A;  4XVX A;  2VF1 A;  4Q4U A;  3Q23 A;  2E80 A;  3DJL A;  4X28 C;  5K3H A;  2YYJ A;  1X91 A;  5M4K A;  2YYK A;  2YYL A;  5B5W A;  3GM6 A;  1IVH A;  2FP2 A;  3D9F A;  3MXL A;  4FZ4 A;  4JIZ A;  4QIC A;  3TOR A;  2BU6 A;  4L3X A;  4KCF A;  2CX9 A;  1X8Z A;  1SIQ A;  2J7A A;  2BTZ A;  3TZ5 A;  1EGD A;  2EC5 A;  1QDB A;  2PO4 A;  1GKZ A;  4H81 A;  3X29 A;  4P13 A;  1R3B A;  2ZDY A;  3KML A;  3RKH A;  3FO3 A;  4E02 A;  1RX0 A;  2IX6 A;  3D2R A;  4M9A A;  3M9V A;  3D9E A;  2BU8 A;  4AI6 A;  4JEK A;  4LQQ B;  5M4M A;  4KTO A;  4IRN A;  2PNR A;  4MPC A;  2Q8I A;  5J71 A;  1FS7 A;  2LFW A;  2IX5 A;  2Q8H A;  2Q8G A;  4Q5C A;  3SF6 A;  1Y0V A;  3P4T A;  3Q0A A;  4O5M A;  4Q5B A;  4V26 A;  3II9 A;  1XFX A;  2REH A;  1FS9 A;  2ZO5 A;  3TZ0 A;  3D9D A;  4P79 A;  1SC5 A;  4KSA A;  3BNH A;  4KS9 A;  2RFQ A;  1XFY A;  2D29 A;  3X0Y A;  3CE2 A;  5M4P A;  2DVL A;  4IV6 A;  3CRL A;  3Q24 A;  5GJW E;  2ZAF A;  2YGW A;  1XG2 B;  4HKS A;  3MKH A;  2R0M A;  3EOM A;  2R02 A;  3N0R A;  1XFU A;  4LQS B;  2R0N A;  2F6L A;  1IS2 A;  4L3Y A;  4Q0T A;  4HKR A;  3SCE A;  1PI1 A;  2ZDX A;  4N5F A;  3F29 A;  3UU9 A;  3FCJ A;  1RJ1 A;  3LGQ A;  3PFD A;  2EBF X;  2BU2 A;  4FF3 A;  2A1T A;  2CJ5 A;  2XQR B;  2JBR A;  3B96 A;  2QR4 A;  2ZKJ A;  4Q17 A;  2DDH A;  2VR0 A;  1SK6 A;  2C12 A;  1X90 A;  4E01 A;  4RM7 A;  1LVC A;  2BU5 A;  3UBR A;  2GBB A;  5M4N A;  3AFF A;  3D9G A;  5K3I A;  2OEV A;  1W07 A;  3MDD A;  4FF4 A;  1FS8 A;  4DOY A;  4NXL A;  2UXW A;  3HWC A;  4AKI A;  3BNJ A;  2FP1 A;  3L1T A;  2E81 A;  1K90 A;  4G5E A;  1WS9 A;  3MPI A;  3C2P A;  2HJN A;  1OAH A;  3GNC A;  4OO2 A;  5GJV E;  1K93 A;  5K3J A;  1Y8N A;  4W9U A;  1R2J A;  3AFE A;  2CJ4 A;  4X28 A;  3NF4 A;  3R7K A;  2OT4 A;  4ZYJ A;  1Y8P A;  2CJ7 A;  3C3L A;  4L3Z A;  2BU7 A;  3LG1 A;  5B5V A;  4WJY A;  1EGE A;  3MMO A;  3TZ2 A;  4L1F A;  1GJV A;  3BNF A;  2R03 A;  4MP7 A;  1Y8O A;  3U33 A;  2JBT A;  4DZY A;  1UKW A;  2XS8 A;  2CJ6 A;  2AO2 A;  1XFZ A;  2OJQ A;  3VAD A;  2JIF A;  5BRK A;  5J6A A;  2OEX A;  3SXQ A;  2YYM A;  2YYG A;  3BNG A;  1S26 A;  4E00 A;  2R05 A;  5B6B A;  3VKH A;  5EZ3 A;  2Z1Q A;  2E0A A;  1RP3 A;  3SWO A;  2RF7 A;  2YYI A;  3Q22 A;  2PG0 A;  2RDZ A;  1BUC A;  4HR3 A;  3TTB A; 
#chains in the Genus database with same CATH homology
 4U83 A;  3GQT A;  3MDE A;  4ZXV A;  3S7W A;  2VIG A;  1T9G A;  1UDY A;  1U8V A;  2FON A;  1JQI A;  3OWM A;  4L38 A;  2EBA A;  3EON A;  3D6B A;  2JBS A;  3OIB A;  1EGC A;  1GU6 A;  2WBI A;  3D1I A;  3OWA A;  2OR0 A;  2C0U A;  4Q1O A;  3MPJ A;  3X0X A;  5K3G A;  1SIR A;  4XVX A;  4Q4U A;  2E80 A;  4X28 C;  5K3H A;  2YYJ A;  2YYK A;  2YYL A;  3GM6 A;  1IVH A;  3TOR A;  3D9F A;  3MXL A;  4L3X A;  4KCF A;  2CX9 A;  1SIQ A;  2J7A A;  1EGD A;  1QDB A;  4P13 A;  3RKH A;  3FO3 A;  1RX0 A;  2IX6 A;  4M9A A;  3M9V A;  3D9E A;  4JEK A;  4KTO A;  4IRN A;  1FS7 A;  2IX5 A;  4Q5C A;  3SF6 A;  3P4T A;  4O5M A;  4Q5B A;  3II9 A;  2REH A;  1FS9 A;  2ZO5 A;  3D9D A;  3BNH A;  2RFQ A;  2D29 A;  3X0Y A;  2DVL A;  4IV6 A;  2ZAF A;  3MKH A;  2R0M A;  3EOM A;  2R0N A;  1IS2 A;  4L3Y A;  4Q0T A;  3SCE A;  4N5F A;  3F29 A;  3UU9 A;  3FCJ A;  3LGQ A;  3PFD A;  2A1T A;  4Q17 A;  2JBR A;  3B96 A;  2DDH A;  2VR0 A;  2C12 A;  4RM7 A;  3UBR A;  3AFF A;  3D9G A;  5K3I A;  1W07 A;  3MDD A;  1FS8 A;  4DOY A;  4NXL A;  2UXW A;  3HWC A;  3BNJ A;  3L1T A;  2E81 A;  4G5E A;  1WS9 A;  3MPI A;  1OAH A;  3GNC A;  4OO2 A;  5K3J A;  4W9U A;  1R2J A;  3AFE A;  4X28 A;  3NF4 A;  3R7K A;  2OT4 A;  4ZYJ A;  4L3Z A;  3LG1 A;  4WJY A;  1EGE A;  3MMO A;  4L1F A;  3BNF A;  2JBT A;  1UKW A;  2JIF A;  3SXQ A;  2YYM A;  2YYG A;  3BNG A;  2Z1Q A;  3SWO A;  2RF7 A;  2YYI A;  2PG0 A;  2RDZ A;  1BUC A;  4HR3 A;  3TTB A; 
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