3OIB | Genus

Total Genus 156

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	156
sequence length	381
structure length	381
Chain Sequence	SIWTTAEREALRKTVRAFAEREVLPHAHEWERAGEIPRELHRKAAELGLLGAGFPEDAGGSGGDGADPVVICEEMHYAGSPGGVYASLFTCGIAVPHMIASGDQRLIDTYVRPTLRGEKIGALAITEPGGGSDVGHLRTRADLDGDHYVINGAKTYITSGVRADYVVTAARTGGPGAGGVSLIVVDKGTPGFEVTRKLDKMGWRSSDTAELSYTDVRVPVANLVGSENTGFAQIAAAFVAERVGLATQAYAGAQRCLDLTVEWCRNRDTFGRPLISRQAVQNTLAGMARRIDVARVYTRHVVERQLAGETNLIAEVCFAKNTAVEAGEWVANQAVQLFGGMGYMAESEVERQYRDMRILGIGGGTTEILTSLAAKTLGFQS

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Oxidoreductase
source organism	Mycobacterium smegmatis
publication title	SAD phasing using iodide ions in a high-throughput structural genomics environment. pubmed doi rcsb
molecule keywords	Acyl-CoA dehydrogenase
total genus	156
structure length	381
sequence length	381
chains with identical sequence	B
ec nomenclature
pdb deposition date	2010-08-18

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00441	Acyl-CoA_dh_1	Acyl-CoA dehydrogenase, C-terminal domain
A	PF02770	Acyl-CoA_dh_M	Acyl-CoA dehydrogenase, middle domain
A	PF02771	Acyl-CoA_dh_N	Acyl-CoA dehydrogenase, N-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.540.10	Mainly Alpha	Orthogonal Bundle	Butyryl-Coa Dehydrogenase, subunit A; domain 1	Acyl-CoA dehydrogenase/oxidase, N-terminal domain	3oibA01
1.20.140.10	Mainly Alpha	Up-down Bundle	Butyryl-CoA Dehydrogenase, subunit A; domain 3	Butyryl-CoA Dehydrogenase, subunit A, domain 3	3oibA03
2.40.110.10	Mainly Beta	Beta Barrel	Butyryl-CoA Dehydrogenase, subunit A; domain 2	Butyryl-CoA Dehydrogenase, subunit A, domain 2	3oibA02

3MMOA 5K3JA 2YYIA 1SIRA 3II9A 1OAHA 2OT4A 2A1TA 4M9AA 1IS2A 4XVXA 3HWCA 4L1FA 3B96A 2YYLA 3S7WA 4RM7A 1FS8A 3UBRA 3D9GA 3SCEA 3NF4A 4L3ZA 4Q5BA 3MKHA 3M9VA 3R7KA 4L3XA 2VIGA 3SWOA 3F29A 2JIFA 3RKHA 2OR0A 2R0MA 3BNHA 2E80A 2J7AA 2CX9A 3BNGA 4L3YA 2DVLA 4X28A 5K3HA 2UXWA 2RFQA 3GQTA 3MPIA 2C0UA 3EOMA 3X0XA 3AFEA 4JEKA 3FO3A 3PFDA 2YYJA 1EGDA 4IRNA 1R2JA 4L38A 5K3GA 1BUCA 3MPJA 2RF7A 2R0NA 1IVHA 3BNJA 1WS9A 3GM6A 2IX6A 4ZXVA 2JBTA 2RDZA 2Z1QA 2DDHA 3EONA 4ZYJA 4HR3A 4Q4UA 4Q0TA 3L1TA 4KCFA 1QDBA 1U8VA 3P4TA 1T9GA 3MDEA 4Q17A 1EGEA 4W9UA 3D1IA 3OWMA 3BNFA 1RX0A 2VR0A 3OWAA 2YYMA 2JBRA 3SXQA 2JBSA 4IV6A 3D6BA 2IX5A 1W07A 3D9DA 2YYKA 3GNCA 2EBAA 1UKWA 5K3IA 1UDYA 4U83A 1FS7A 4P13A 4N5FA 1SIQA 2ZAFA 1FS9A 3AFFA 2ZO5A 3OIBA 3LGQA 3MXLA 3FCJA 2YYGA 2E81A 3LG1A 3TORA 4OO2A 1JQIA 3D9EA 3X0YA 4DOYA 2C12A 3UU9A 4Q5CA 2PG0A 4KTOA 4WJYA 1GU6A 4Q1OA 4X28C 4NXLA 3TTBA 2WBIA 2REHA 2FONA 1EGCA 4O5MA 2D29A 4G5EA 3MDDA 3SF6A 3D9FA
chains in the Genus database with same CATH superfamily

1XFVA 1Y0VA 3X29A 3MMOA 5K3JA 5J71A 2XS1A 2YYIA 1SIRA 3II9A 4HKSA 1K90A 4MP2A 4QICA 4AKIA 1OAHA 2OT4A 2A1TA 2BTZA 3KMLA 4M9AA 1IS2A 4XVXA 2ZDYA 2CJ4A 3HWCA 4HKRA 4L1FA 2Q8HA 1XFZA 2EC5A 5M4KA 3CE2A 3B96A 1JM6A 1LVCA 1S26A 2BU5A 2YYLA 3TZ4A 1GKZA 4JIZA 3Q24A 2CJ5A 3S7WA 4RM7A 1FS8A 2ZKJA 1X90A 3UBRA 1X91A 2Q8GA 2Q8FA 3D9GA 1XFXA 3SCEA 3NF4A 4L3ZA 4Q5BA 2XQRB 3MKHA 4FF1A 4AI6A 2BU6A 2BU8A 4H85A 3M9VA 4JIOA 2ZDXA 3R7KA 1XG2B 2F6LA 4L3XA 4FF3A 2VIGA 3SWOA 3F29A 2JIFA 2E0AA 3RKHA 3DJLA 4MPEA 2OR0A 2R0MA 2Q8IA 3BNHA 2E80A 2J7AA 2CX9A 3BNGA 4L3YA 5B6BA 2DVLA 4X28A 5K3HA 4LQQB 2UXWA 2RFQA 4E00A 4E01A 3GQTA 1R3BA 1Y8PA 2OJQA 2AO2A 1Y8NA 3N0RA 5M4NA 3MPIA 2C0UA 3EOMA 4MP7A 3TZ0A 5EZ3A 3X0XA 3AFEA 4JEKA 3FO3A 2GBBA 4KSFA 5J6AA 5BRMA 2R02A 2R05A 3PFDA 2EBHX 2YYJA 1EGDA 4IRNA 1R2JA 4L38A 1K93A 4V25A 1RJ4A 5K3GA 1BUCA 3MPJA 1K8TA 2R0NA 1IVHA 2QR4A 1XFUA 2RF7A 3BNJA 4H7QA 4J1VA 5B5WA 1XFWA 1WS9A 2CJ6A 1XFYA 3GM6A 4P79A 2IX6A 4ZXVA 2JBTA 2RDZA 2Z1QA 1PK0A 1GJVA 2DDHA 3EONA 4ZYJA 2AZEA 2BU2A 4AKHA 4FF4A 4F0XA 2OEVA 2LFWA 4HR3A 4Q4UA 4Q0TA 3L1TA 2EBFX 4KCFA 1RJ1A 4DZYA 1QDBA 4MPNA 1U8VA 3P4TA 1T9GA 3MDEA 1RP3A 1EGEA 1SK6A 4Q17A 4W9UA 1SC5A 3D1IA 2XS8A 2FP2A 3OWMA 3BNFA 4H81A 1RX0A 2VR0A 3OWAA 2YYMA 2JBRA 4FF2A 3SXQA 2JBSA 4IV6A 5BRKA 3D6BA 2IX5A 2PO4A 1W07A 4AKGA 3D9DA 4MPCA 2YYKA 4LQSB 3TZ5A 3GNCA 2EBAA 2FP1A 2CJ8A 1UKWA 5K3IA 2PNRA 3CRKA 3Q23A 1UDYA 4U83A 1FS7A 2CJ7A 4P13A 3TZ2A 4V26A 4N5FA 2YGWA 5GJWE 1SIQA 2ZAFA 1FS9A 2VF1A 5M4PA 3AFFA 5M4MA 2ZO5A 1PI1A 3D2RA 3OIBA 3C46A 3LGQA 3MXLA 3FCJA 4KSAA 2YYGA 5B5VA 1GKXA 2E81A 2BU7A 3LG1A 3U33A 3TORA 2R03A 4OO2A 3VKGA 1JQIA 3D9EA 3X0YA 4DOYA 3VADA 2C12A 3UU9A 3VKHA 3C2PA 4KS9A 4Q5CA 3Q22A 3C3LA 2PG0A 4KTOA 1X8ZA 4WJYA 1GU6A 4Q1OA 3Q0AA 4X28C 4NXLA 2HJNA 4G97A 5GJVE 3CRLA 3TTBA 2WBIA 2REHA 2FONA 1EGCA 4E02A 4FZ4A 2OEXA 4O5MA 2D29A 4G5EA 3MDDA 1Y8OA 3SF6A 3D9FA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3MMO A;  5K3J A;  2YYI A;  1SIR A;  3II9 A;  1OAH A;  2OT4 A;  2A1T A;  4M9A A;  1IS2 A;  4XVX A;  3HWC A;  4L1F A;  3B96 A;  2YYL A;  3S7W A;  4RM7 A;  1FS8 A;  3UBR A;  3D9G A;  3SCE A;  3NF4 A;  4L3Z A;  4Q5B A;  3MKH A;  3M9V A;  3R7K A;  4L3X A;  2VIG A;  3SWO A;  3F29 A;  2JIF A;  3RKH A;  2OR0 A;  2R0M A;  3BNH A;  2E80 A;  2J7A A;  2CX9 A;  3BNG A;  4L3Y A;  2DVL A;  4X28 A;  5K3H A;  2UXW A;  2RFQ A;  3GQT A;  3MPI A;  2C0U A;  3EOM A;  3X0X A;  3AFE A;  4JEK A;  3FO3 A;  3PFD A;  2YYJ A;  1EGD A;  4IRN A;  1R2J A;  4L38 A;  5K3G A;  1BUC A;  3MPJ A;  2RF7 A;  2R0N A;  1IVH A;  3BNJ A;  1WS9 A;  3GM6 A;  2IX6 A;  4ZXV A;  2JBT A;  2RDZ A;  2Z1Q A;  2DDH A;  3EON A;  4ZYJ A;  4HR3 A;  4Q4U A;  4Q0T A;  3L1T A;  4KCF A;  1QDB A;  1U8V A;  3P4T A;  1T9G A;  3MDE A;  4Q17 A;  1EGE A;  4W9U A;  3D1I A;  3OWM A;  3BNF A;  1RX0 A;  2VR0 A;  3OWA A;  2YYM A;  2JBR A;  3SXQ A;  2JBS A;  4IV6 A;  3D6B A;  2IX5 A;  1W07 A;  3D9D A;  2YYK A;  3GNC A;  2EBA A;  1UKW A;  5K3I A;  1UDY A;  4U83 A;  1FS7 A;  4P13 A;  4N5F A;  1SIQ A;  2ZAF A;  1FS9 A;  3AFF A;  2ZO5 A;  3OIB A;  3LGQ A;  3MXL A;  3FCJ A;  2YYG A;  2E81 A;  3LG1 A;  3TOR A;  4OO2 A;  1JQI A;  3D9E A;  3X0Y A;  4DOY A;  2C12 A;  3UU9 A;  4Q5C A;  2PG0 A;  4KTO A;  4WJY A;  1GU6 A;  4Q1O A;  4X28 C;  4NXL A;  3TTB A;  2WBI A;  2REH A;  2FON A;  1EGC A;  4O5M A;  2D29 A;  4G5E A;  3MDD A;  3SF6 A;  3D9F A; 
#chains in the Genus database with same CATH topology
 1XFV A;  1Y0V A;  3X29 A;  3MMO A;  5K3J A;  5J71 A;  2XS1 A;  2YYI A;  1SIR A;  3II9 A;  4HKS A;  1K90 A;  4MP2 A;  4QIC A;  4AKI A;  1OAH A;  2OT4 A;  2A1T A;  2BTZ A;  3KML A;  4M9A A;  1IS2 A;  4XVX A;  2ZDY A;  2CJ4 A;  3HWC A;  4HKR A;  4L1F A;  2Q8H A;  1XFZ A;  2EC5 A;  5M4K A;  3CE2 A;  3B96 A;  1JM6 A;  1LVC A;  1S26 A;  2BU5 A;  2YYL A;  3TZ4 A;  1GKZ A;  4JIZ A;  3Q24 A;  2CJ5 A;  3S7W A;  4RM7 A;  1FS8 A;  2ZKJ A;  1X90 A;  3UBR A;  1X91 A;  2Q8G A;  2Q8F A;  3D9G A;  1XFX A;  3SCE A;  3NF4 A;  4L3Z A;  4Q5B A;  2XQR B;  3MKH A;  4FF1 A;  4AI6 A;  2BU6 A;  2BU8 A;  4H85 A;  3M9V A;  4JIO A;  2ZDX A;  3R7K A;  1XG2 B;  2F6L A;  4L3X A;  4FF3 A;  2VIG A;  3SWO A;  3F29 A;  2JIF A;  2E0A A;  3RKH A;  3DJL A;  4MPE A;  2OR0 A;  2R0M A;  2Q8I A;  3BNH A;  2E80 A;  2J7A A;  2CX9 A;  3BNG A;  4L3Y A;  5B6B A;  2DVL A;  4X28 A;  5K3H A;  4LQQ B;  2UXW A;  2RFQ A;  4E00 A;  4E01 A;  3GQT A;  1R3B A;  1Y8P A;  2OJQ A;  2AO2 A;  1Y8N A;  3N0R A;  5M4N A;  3MPI A;  2C0U A;  3EOM A;  4MP7 A;  3TZ0 A;  5EZ3 A;  3X0X A;  3AFE A;  4JEK A;  3FO3 A;  2GBB A;  4KSF A;  5J6A A;  5BRM A;  2R02 A;  2R05 A;  3PFD A;  2EBH X;  2YYJ A;  1EGD A;  4IRN A;  1R2J A;  4L38 A;  1K93 A;  4V25 A;  1RJ4 A;  5K3G A;  1BUC A;  3MPJ A;  1K8T A;  2R0N A;  1IVH A;  2QR4 A;  1XFU A;  2RF7 A;  3BNJ A;  4H7Q A;  4J1V A;  5B5W A;  1XFW A;  1WS9 A;  2CJ6 A;  1XFY A;  3GM6 A;  4P79 A;  2IX6 A;  4ZXV A;  2JBT A;  2RDZ A;  2Z1Q A;  1PK0 A;  1GJV A;  2DDH A;  3EON A;  4ZYJ A;  2AZE A;  2BU2 A;  4AKH A;  4FF4 A;  4F0X A;  2OEV A;  2LFW A;  4HR3 A;  4Q4U A;  4Q0T A;  3L1T A;  2EBF X;  4KCF A;  1RJ1 A;  4DZY A;  1QDB A;  4MPN A;  1U8V A;  3P4T A;  1T9G A;  3MDE A;  1RP3 A;  1EGE A;  1SK6 A;  4Q17 A;  4W9U A;  1SC5 A;  3D1I A;  2XS8 A;  2FP2 A;  3OWM A;  3BNF A;  4H81 A;  1RX0 A;  2VR0 A;  3OWA A;  2YYM A;  2JBR A;  4FF2 A;  3SXQ A;  2JBS A;  4IV6 A;  5BRK A;  3D6B A;  2IX5 A;  2PO4 A;  1W07 A;  4AKG A;  3D9D A;  4MPC A;  2YYK A;  4LQS B;  3TZ5 A;  3GNC A;  2EBA A;  2FP1 A;  2CJ8 A;  1UKW A;  5K3I A;  2PNR A;  3CRK A;  3Q23 A;  1UDY A;  4U83 A;  1FS7 A;  2CJ7 A;  4P13 A;  3TZ2 A;  4V26 A;  4N5F A;  2YGW A;  5GJW E;  1SIQ A;  2ZAF A;  1FS9 A;  2VF1 A;  5M4P A;  3AFF A;  5M4M A;  2ZO5 A;  1PI1 A;  3D2R A;  3OIB A;  3C46 A;  3LGQ A;  3MXL A;  3FCJ A;  4KSA A;  2YYG A;  5B5V A;  1GKX A;  2E81 A;  2BU7 A;  3LG1 A;  3U33 A;  3TOR A;  2R03 A;  4OO2 A;  3VKG A;  1JQI A;  3D9E A;  3X0Y A;  4DOY A;  3VAD A;  2C12 A;  3UU9 A;  3VKH A;  3C2P A;  4KS9 A;  4Q5C A;  3Q22 A;  3C3L A;  2PG0 A;  4KTO A;  1X8Z A;  4WJY A;  1GU6 A;  4Q1O A;  3Q0A A;  4X28 C;  4NXL A;  2HJN A;  4G97 A;  5GJV E;  3CRL A;  3TTB A;  2WBI A;  2REH A;  2FON A;  1EGC A;  4E02 A;  4FZ4 A;  2OEX A;  4O5M A;  2D29 A;  4G5E A;  3MDD A;  1Y8O A;  3SF6 A;  3D9F A; 
#chains in the Genus database with same CATH homology
 3MMO A;  5K3J A;  2YYI A;  1SIR A;  3II9 A;  1OAH A;  2OT4 A;  2A1T A;  4M9A A;  1IS2 A;  4XVX A;  3HWC A;  4L1F A;  3B96 A;  2YYL A;  3S7W A;  4RM7 A;  1FS8 A;  3UBR A;  3D9G A;  3SCE A;  3NF4 A;  4L3Z A;  4Q5B A;  3MKH A;  3M9V A;  3R7K A;  4L3X A;  2VIG A;  3SWO A;  3F29 A;  2JIF A;  3RKH A;  2OR0 A;  2R0M A;  3BNH A;  2E80 A;  2J7A A;  2CX9 A;  3BNG A;  4L3Y A;  2DVL A;  4X28 A;  5K3H A;  2UXW A;  2RFQ A;  3GQT A;  3MPI A;  2C0U A;  3EOM A;  3X0X A;  3AFE A;  4JEK A;  3FO3 A;  3PFD A;  2YYJ A;  1EGD A;  4IRN A;  1R2J A;  4L38 A;  5K3G A;  1BUC A;  3MPJ A;  2RF7 A;  2R0N A;  1IVH A;  3BNJ A;  1WS9 A;  3GM6 A;  2IX6 A;  4ZXV A;  2JBT A;  2RDZ A;  2Z1Q A;  2DDH A;  3EON A;  4ZYJ A;  4HR3 A;  4Q4U A;  4Q0T A;  3L1T A;  4KCF A;  1QDB A;  1U8V A;  3P4T A;  1T9G A;  3MDE A;  4Q17 A;  1EGE A;  4W9U A;  3D1I A;  3OWM A;  3BNF A;  1RX0 A;  2VR0 A;  3OWA A;  2YYM A;  2JBR A;  3SXQ A;  2JBS A;  4IV6 A;  3D6B A;  2IX5 A;  1W07 A;  3D9D A;  2YYK A;  3GNC A;  2EBA A;  1UKW A;  5K3I A;  1UDY A;  4U83 A;  1FS7 A;  4P13 A;  4N5F A;  1SIQ A;  2ZAF A;  1FS9 A;  3AFF A;  2ZO5 A;  3OIB A;  3LGQ A;  3MXL A;  3FCJ A;  2YYG A;  2E81 A;  3LG1 A;  3TOR A;  4OO2 A;  1JQI A;  3D9E A;  3X0Y A;  4DOY A;  2C12 A;  3UU9 A;  4Q5C A;  2PG0 A;  4KTO A;  4WJY A;  1GU6 A;  4Q1O A;  4X28 C;  4NXL A;  3TTB A;  2WBI A;  2REH A;  2FON A;  1EGC A;  4O5M A;  2D29 A;  4G5E A;  3MDD A;  3SF6 A;  3D9F A;

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similar chains in the Genus database (?% sequence similarity)

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3OIBA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations