3SWO | Genus

Total Genus 155

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	155
sequence length	388
structure length	388
Chain Sequence	KSTYAPLELFDTDRLLDQDERDIAATVRQFVDTRLKPNVEGWFESATLPSELAKEFGNLGVLGMHLQGYGCAGTNAVSYGLACMELEAGDSGFRSFVSVQGSLSMFSIYRYGSEEQKNEWLPRLAAGDAIGCFGLTEPDFGSNPAGMRTRARRDGSDWILNGTKMWITNGNLADVATVWAQTDDGIRGFLVPTDTPGFTANEIHRKLSLRASVTSELVLDNVRLPASAQLPLAEGLSAPLSCLNEARFGIVFGALGAARDSLETTIAYTQSREVFDKPLSNYQLTQEKLANMTVELGKGMLLAIHLGRIKDAEGVRPEQISLGKLNNVREAIAIARECRTLLGGSGITLEYSPLRHANNLESVLTYEGTSEMHLLSIGKALTGKAAFR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 388 atoms

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388 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Oxidoreductase
source organism	Mycobacterium smegmatis
publication title	Increasing the structural coverage of tuberculosis drug targets. pubmed doi rcsb
molecule keywords	Glutaryl-CoA dehydrogenase
total genus	155
structure length	388
sequence length	388
chains with identical sequence	B, C, D
ec nomenclature	ec 1.3.99.7: Transferred entry: 1.3.8.6.
pdb deposition date	2011-07-14

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00441	Acyl-CoA_dh_1	Acyl-CoA dehydrogenase, C-terminal domain
A	PF02770	Acyl-CoA_dh_M	Acyl-CoA dehydrogenase, middle domain
A	PF02771	Acyl-CoA_dh_N	Acyl-CoA dehydrogenase, N-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.540.10	Mainly Alpha	Orthogonal Bundle	Butyryl-Coa Dehydrogenase, subunit A; domain 1	Acyl-CoA dehydrogenase/oxidase, N-terminal domain	3swoA01
1.20.140.10	Mainly Alpha	Up-down Bundle	Butyryl-CoA Dehydrogenase, subunit A; domain 3	Butyryl-CoA Dehydrogenase, subunit A, domain 3	3swoA03
2.40.110.10	Mainly Beta	Beta Barrel	Butyryl-CoA Dehydrogenase, subunit A; domain 2	Butyryl-CoA Dehydrogenase, subunit A, domain 2	3swoA02

3D6BA 3D9FA 3P4TA 2YYGA 4DOYA 1RX0A 3SF6A 3OWAA 4IV6A 3HWCA 2Z1QA 3B96A 2ZAFA 4KCFA 2RF7A 4L38A 4X28A 3NF4A 3FCJA 4KTOA 3SCEA 3SXQA 3UU9A 1SIRA 3OIBA 2C12A 3TORA 4Q1OA 2C0UA 5K3JA 1UKWA 1W07A 1T9GA 4RM7A 3L1TA 1SIQA 3S7WA 3X0YA 2R0MA 3SWOA 1IS2A 1EGDA 2YYLA 3LGQA 2JIFA 4WJYA 3M9VA 3TTBA 3MPJA 3BNFA 4U83A 2RFQA 3D9EA 2EBAA 4M9AA 1QDBA 3GNCA 4W9UA 1EGEA 2OT4A 1OAHA 5K3HA 2REHA 3EONA 3II9A 2CX9A 2YYKA 3MDDA 2R0NA 1JQIA 1EGCA 2PG0A 4NXLA 3GM6A 4IRNA 1IVHA 1GU6A 2VR0A 4L1FA 4L3YA 3BNHA 3BNGA 4ZYJA 2IX6A 3UBRA 2IX5A 3F29A 2RDZA 2D29A 2ZO5A 2E80A 4JEKA 3RKHA 2YYMA 3MDEA 3FO3A 4N5FA 4XVXA 4X28C 1FS7A 3AFFA 2DDHA 4L3XA 2E81A 2UXWA 4ZXVA 3BNJA 3OWMA 2OR0A 2J7AA 3MXLA 1R2JA 4Q0TA 3MPIA 4L3ZA 4Q4UA 2JBRA 1WS9A 5K3GA 1BUCA 3D9DA 1FS9A 4G5EA 2YYIA 4Q17A 2VIGA 4OO2A 4Q5CA 1U8VA 3GQTA 2JBSA 2DVLA 4Q5BA 2WBIA 3D9GA 2JBTA 1FS8A 4HR3A 3LG1A 4O5MA 3D1IA 3MKHA 2FONA 3PFDA 3EOMA 3MMOA 5K3IA 1UDYA 2A1TA 3R7KA 4P13A 3X0XA 3AFEA 2YYJA
chains in the Genus database with same CATH superfamily

3D6BA 1JM6A 3D9FA 2EBFX 4H81A 2E0AA 3Q0AA 3P4TA 1XFZA 1GJVA 4E00A 2YYGA 1R3BA 4DOYA 1RX0A 5BRMA 3SF6A 3VKGA 3OWAA 4IV6A 3HWCA 4J1VA 2Z1QA 3CRLA 2OJQA 4JIOA 4LQQB 4DZYA 5B5WA 3B96A 2AZEA 2ZAFA 4KCFA 4HKRA 2RF7A 2F6LA 4L38A 1SK6A 4X28A 3NF4A 3FCJA 2BU8A 5B6BA 5M4NA 2OEVA 4KTOA 4FF4A 3C2PA 4V26A 4JIZA 5M4MA 3Q22A 3SCEA 3SXQA 3UU9A 2CJ5A 1SIRA 3OIBA 1K93A 1X91A 2R03A 5B5VA 3TZ4A 2C12A 3TORA 4Q1OA 2C0UA 5K3JA 1UKWA 1W07A 1T9GA 4RM7A 2CJ6A 2XQRB 3L1TA 1SIQA 3S7WA 3X0YA 2R0MA 3SWOA 4FF1A 1IS2A 1RJ4A 1EGDA 2YGWA 2EC5A 2YYLA 3LGQA 1K8TA 1Y8OA 2CJ7A 2JIFA 2CJ8A 4WJYA 3M9VA 3TTBA 2ZDYA 1Y8PA 3MPJA 1PI1A 3BNFA 4U83A 3N0RA 2RFQA 3D9EA 2EBAA 4M9AA 1QDBA 3GNCA 2Q8GA 4FF2A 4W9UA 3TZ5A 1EGEA 2OT4A 1OAHA 3VKHA 5K3HA 2REHA 3EONA 1XFVA 5GJWE 3II9A 2CX9A 2YYKA 3MDDA 2R0NA 4HKSA 1JQIA 4H7QA 1GKZA 1EGCA 2BU6A 2PG0A 3CRKA 3C3LA 4NXLA 3GM6A 3Q24A 3C46A 2XS1A 5GJVE 4IRNA 1IVHA 1GU6A 4KSFA 2VR0A 1XFUA 2HJNA 4L1FA 2GBBA 2ZKJA 2R05A 3BNHA 3BNGA 4G97A 4L3YA 1GKXA 2AO2A 4ZYJA 2IX6A 2PNRA 5BRKA 4AKIA 2Q8IA 3UBRA 1LVCA 4MP2A 1K90A 4AKHA 2IX5A 3F29A 1X8ZA 2RDZA 4P79A 2QR4A 2D29A 2ZO5A 2E80A 4JEKA 2R02A 4MP7A 3RKHA 2YYMA 3MDEA 3FO3A 1XFYA 4N5FA 4XVXA 2PO4A 4X28C 1FS7A 5M4PA 1S26A 2BU7A 3AFFA 2DDHA 4L3XA 2E81A 2UXWA 5M4KA 3Q23A 4ZXVA 1Y0VA 3BNJA 2Q8HA 2ZDXA 2OR0A 2J7AA 3MXLA 3OWMA 1XG2B 4MPCA 4KS9A 2Q8FA 1RJ1A 1R2JA 2XS8A 4Q0TA 3MPIA 4AKGA 4L3ZA 1Y8NA 4Q4UA 3VADA 2JBRA 1WS9A 3CE2A 4MPEA 4V25A 4MPNA 4AI6A 1RP3A 2CJ4A 3DJLA 5K3GA 1BUCA 3D9DA 1X90A 1FS9A 2FP1A 3D2RA 4G5EA 4LQSB 2YYIA 4Q17A 2VF1A 2BTZA 2VIGA 4KSAA 4F0XA 4QICA 4OO2A 4Q5CA 1SC5A 1XFXA 3TZ2A 1U8VA 3U33A 3GQTA 2JBSA 2DVLA 4Q5BA 3TZ0A 2WBIA 3D9GA 2JBTA 1FS8A 4H85A 5J6AA 1XFWA 4HR3A 3LG1A 4O5MA 3D1IA 2BU5A 3MKHA 2FONA 3PFDA 2BU2A 4E02A 3EOMA 2EBHX 1PK0A 2OEXA 3MMOA 2LFWA 4E01A 5K3IA 4FF3A 5EZ3A 4FZ4A 3X29A 1UDYA 2A1TA 3R7KA 4P13A 2FP2A 3X0XA 3AFEA 3KMLA 2YYJA 5J71A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3D6B A;  3D9F A;  3P4T A;  2YYG A;  4DOY A;  1RX0 A;  3SF6 A;  3OWA A;  4IV6 A;  3HWC A;  2Z1Q A;  3B96 A;  2ZAF A;  4KCF A;  2RF7 A;  4L38 A;  4X28 A;  3NF4 A;  3FCJ A;  4KTO A;  3SCE A;  3SXQ A;  3UU9 A;  1SIR A;  3OIB A;  2C12 A;  3TOR A;  4Q1O A;  2C0U A;  5K3J A;  1UKW A;  1W07 A;  1T9G A;  4RM7 A;  3L1T A;  1SIQ A;  3S7W A;  3X0Y A;  2R0M A;  3SWO A;  1IS2 A;  1EGD A;  2YYL A;  3LGQ A;  2JIF A;  4WJY A;  3M9V A;  3TTB A;  3MPJ A;  3BNF A;  4U83 A;  2RFQ A;  3D9E A;  2EBA A;  4M9A A;  1QDB A;  3GNC A;  4W9U A;  1EGE A;  2OT4 A;  1OAH A;  5K3H A;  2REH A;  3EON A;  3II9 A;  2CX9 A;  2YYK A;  3MDD A;  2R0N A;  1JQI A;  1EGC A;  2PG0 A;  4NXL A;  3GM6 A;  4IRN A;  1IVH A;  1GU6 A;  2VR0 A;  4L1F A;  4L3Y A;  3BNH A;  3BNG A;  4ZYJ A;  2IX6 A;  3UBR A;  2IX5 A;  3F29 A;  2RDZ A;  2D29 A;  2ZO5 A;  2E80 A;  4JEK A;  3RKH A;  2YYM A;  3MDE A;  3FO3 A;  4N5F A;  4XVX A;  4X28 C;  1FS7 A;  3AFF A;  2DDH A;  4L3X A;  2E81 A;  2UXW A;  4ZXV A;  3BNJ A;  3OWM A;  2OR0 A;  2J7A A;  3MXL A;  1R2J A;  4Q0T A;  3MPI A;  4L3Z A;  4Q4U A;  2JBR A;  1WS9 A;  5K3G A;  1BUC A;  3D9D A;  1FS9 A;  4G5E A;  2YYI A;  4Q17 A;  2VIG A;  4OO2 A;  4Q5C A;  1U8V A;  3GQT A;  2JBS A;  2DVL A;  4Q5B A;  2WBI A;  3D9G A;  2JBT A;  1FS8 A;  4HR3 A;  3LG1 A;  4O5M A;  3D1I A;  3MKH A;  2FON A;  3PFD A;  3EOM A;  3MMO A;  5K3I A;  1UDY A;  2A1T A;  3R7K A;  4P13 A;  3X0X A;  3AFE A;  2YYJ A; 
#chains in the Genus database with same CATH topology
 3D6B A;  1JM6 A;  3D9F A;  2EBF X;  4H81 A;  2E0A A;  3Q0A A;  3P4T A;  1XFZ A;  1GJV A;  4E00 A;  2YYG A;  1R3B A;  4DOY A;  1RX0 A;  5BRM A;  3SF6 A;  3VKG A;  3OWA A;  4IV6 A;  3HWC A;  4J1V A;  2Z1Q A;  3CRL A;  2OJQ A;  4JIO A;  4LQQ B;  4DZY A;  5B5W A;  3B96 A;  2AZE A;  2ZAF A;  4KCF A;  4HKR A;  2RF7 A;  2F6L A;  4L38 A;  1SK6 A;  4X28 A;  3NF4 A;  3FCJ A;  2BU8 A;  5B6B A;  5M4N A;  2OEV A;  4KTO A;  4FF4 A;  3C2P A;  4V26 A;  4JIZ A;  5M4M A;  3Q22 A;  3SCE A;  3SXQ A;  3UU9 A;  2CJ5 A;  1SIR A;  3OIB A;  1K93 A;  1X91 A;  2R03 A;  5B5V A;  3TZ4 A;  2C12 A;  3TOR A;  4Q1O A;  2C0U A;  5K3J A;  1UKW A;  1W07 A;  1T9G A;  4RM7 A;  2CJ6 A;  2XQR B;  3L1T A;  1SIQ A;  3S7W A;  3X0Y A;  2R0M A;  3SWO A;  4FF1 A;  1IS2 A;  1RJ4 A;  1EGD A;  2YGW A;  2EC5 A;  2YYL A;  3LGQ A;  1K8T A;  1Y8O A;  2CJ7 A;  2JIF A;  2CJ8 A;  4WJY A;  3M9V A;  3TTB A;  2ZDY A;  1Y8P A;  3MPJ A;  1PI1 A;  3BNF A;  4U83 A;  3N0R A;  2RFQ A;  3D9E A;  2EBA A;  4M9A A;  1QDB A;  3GNC A;  2Q8G A;  4FF2 A;  4W9U A;  3TZ5 A;  1EGE A;  2OT4 A;  1OAH A;  3VKH A;  5K3H A;  2REH A;  3EON A;  1XFV A;  5GJW E;  3II9 A;  2CX9 A;  2YYK A;  3MDD A;  2R0N A;  4HKS A;  1JQI A;  4H7Q A;  1GKZ A;  1EGC A;  2BU6 A;  2PG0 A;  3CRK A;  3C3L A;  4NXL A;  3GM6 A;  3Q24 A;  3C46 A;  2XS1 A;  5GJV E;  4IRN A;  1IVH A;  1GU6 A;  4KSF A;  2VR0 A;  1XFU A;  2HJN A;  4L1F A;  2GBB A;  2ZKJ A;  2R05 A;  3BNH A;  3BNG A;  4G97 A;  4L3Y A;  1GKX A;  2AO2 A;  4ZYJ A;  2IX6 A;  2PNR A;  5BRK A;  4AKI A;  2Q8I A;  3UBR A;  1LVC A;  4MP2 A;  1K90 A;  4AKH A;  2IX5 A;  3F29 A;  1X8Z A;  2RDZ A;  4P79 A;  2QR4 A;  2D29 A;  2ZO5 A;  2E80 A;  4JEK A;  2R02 A;  4MP7 A;  3RKH A;  2YYM A;  3MDE A;  3FO3 A;  1XFY A;  4N5F A;  4XVX A;  2PO4 A;  4X28 C;  1FS7 A;  5M4P A;  1S26 A;  2BU7 A;  3AFF A;  2DDH A;  4L3X A;  2E81 A;  2UXW A;  5M4K A;  3Q23 A;  4ZXV A;  1Y0V A;  3BNJ A;  2Q8H A;  2ZDX A;  2OR0 A;  2J7A A;  3MXL A;  3OWM A;  1XG2 B;  4MPC A;  4KS9 A;  2Q8F A;  1RJ1 A;  1R2J A;  2XS8 A;  4Q0T A;  3MPI A;  4AKG A;  4L3Z A;  1Y8N A;  4Q4U A;  3VAD A;  2JBR A;  1WS9 A;  3CE2 A;  4MPE A;  4V25 A;  4MPN A;  4AI6 A;  1RP3 A;  2CJ4 A;  3DJL A;  5K3G A;  1BUC A;  3D9D A;  1X90 A;  1FS9 A;  2FP1 A;  3D2R A;  4G5E A;  4LQS B;  2YYI A;  4Q17 A;  2VF1 A;  2BTZ A;  2VIG A;  4KSA A;  4F0X A;  4QIC A;  4OO2 A;  4Q5C A;  1SC5 A;  1XFX A;  3TZ2 A;  1U8V A;  3U33 A;  3GQT A;  2JBS A;  2DVL A;  4Q5B A;  3TZ0 A;  2WBI A;  3D9G A;  2JBT A;  1FS8 A;  4H85 A;  5J6A A;  1XFW A;  4HR3 A;  3LG1 A;  4O5M A;  3D1I A;  2BU5 A;  3MKH A;  2FON A;  3PFD A;  2BU2 A;  4E02 A;  3EOM A;  2EBH X;  1PK0 A;  2OEX A;  3MMO A;  2LFW A;  4E01 A;  5K3I A;  4FF3 A;  5EZ3 A;  4FZ4 A;  3X29 A;  1UDY A;  2A1T A;  3R7K A;  4P13 A;  2FP2 A;  3X0X A;  3AFE A;  3KML A;  2YYJ A;  5J71 A; 
#chains in the Genus database with same CATH homology
 3D6B A;  3D9F A;  3P4T A;  2YYG A;  4DOY A;  1RX0 A;  3SF6 A;  3OWA A;  4IV6 A;  3HWC A;  2Z1Q A;  3B96 A;  2ZAF A;  4KCF A;  2RF7 A;  4L38 A;  4X28 A;  3NF4 A;  3FCJ A;  4KTO A;  3SCE A;  3SXQ A;  3UU9 A;  1SIR A;  3OIB A;  2C12 A;  3TOR A;  4Q1O A;  2C0U A;  5K3J A;  1UKW A;  1W07 A;  1T9G A;  4RM7 A;  3L1T A;  1SIQ A;  3S7W A;  3X0Y A;  2R0M A;  3SWO A;  1IS2 A;  1EGD A;  2YYL A;  3LGQ A;  2JIF A;  4WJY A;  3M9V A;  3TTB A;  3MPJ A;  3BNF A;  4U83 A;  2RFQ A;  3D9E A;  2EBA A;  4M9A A;  1QDB A;  3GNC A;  4W9U A;  1EGE A;  2OT4 A;  1OAH A;  5K3H A;  2REH A;  3EON A;  3II9 A;  2CX9 A;  2YYK A;  3MDD A;  2R0N A;  1JQI A;  1EGC A;  2PG0 A;  4NXL A;  3GM6 A;  4IRN A;  1IVH A;  1GU6 A;  2VR0 A;  4L1F A;  4L3Y A;  3BNH A;  3BNG A;  4ZYJ A;  2IX6 A;  3UBR A;  2IX5 A;  3F29 A;  2RDZ A;  2D29 A;  2ZO5 A;  2E80 A;  4JEK A;  3RKH A;  2YYM A;  3MDE A;  3FO3 A;  4N5F A;  4XVX A;  4X28 C;  1FS7 A;  3AFF A;  2DDH A;  4L3X A;  2E81 A;  2UXW A;  4ZXV A;  3BNJ A;  3OWM A;  2OR0 A;  2J7A A;  3MXL A;  1R2J A;  4Q0T A;  3MPI A;  4L3Z A;  4Q4U A;  2JBR A;  1WS9 A;  5K3G A;  1BUC A;  3D9D A;  1FS9 A;  4G5E A;  2YYI A;  4Q17 A;  2VIG A;  4OO2 A;  4Q5C A;  1U8V A;  3GQT A;  2JBS A;  2DVL A;  4Q5B A;  2WBI A;  3D9G A;  2JBT A;  1FS8 A;  4HR3 A;  3LG1 A;  4O5M A;  3D1I A;  3MKH A;  2FON A;  3PFD A;  3EOM A;  3MMO A;  5K3I A;  1UDY A;  2A1T A;  3R7K A;  4P13 A;  3X0X A;  3AFE A;  2YYJ A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3SWOA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations