4JEK | Genus

Total Genus 148

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	148
sequence length	399
structure length	399
Chain Sequence	DPVAVARGLAEKWRATAVERDRAGGSATAEREDLRASGLLSLLVPREYGGWGADWPTAIEVVREIAAADGSLGHLFGYHLTNAPMIELIGSQEQEEHLYTQIAQNNWWTGNASSENNSHVLDWKVSATPTEDGGYVLNGTKHFCSGAKGSDLLFVFGVVQDDSPQQGAIIAAAIPTSRAGVTPNDDWAAIGMRQTDSGSTDFHNVKVEPDEVLGAPNAFVLAFIQSERGSLFAPIAQLIFANVYLGIAHGALDAAREYTRTQARPWTPAGIQQATEDPYTIRSYGEFTIALQGADAAAREAAHLLQTVWDKGDALTPEDRGELMVKVSGVKALATNAALNISSGVFEVIGARGTHPRYGFDRFWRNVRTHSLHDPVSYKIADVGKHTLNGQYPIPGFTS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Oxidoreductase
source organism	Rhodococcus sp.
publication title	Crystallization and preliminary structural analysis of dibenzothiophene monooxygenase (DszC) from Rhodococcus erythropolis pubmed doi rcsb
molecule keywords	Dibenzothiophene desulfurization enzyme C
total genus	148
structure length	399
sequence length	399
chains with identical sequence	B, C, D, E, F, G, H
ec nomenclature
pdb deposition date	2013-02-27

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF02770	Acyl-CoA_dh_M	Acyl-CoA dehydrogenase, middle domain
A	PF02771	Acyl-CoA_dh_N	Acyl-CoA dehydrogenase, N-terminal domain
A	PF08028	Acyl-CoA_dh_2	Acyl-CoA dehydrogenase, C-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.540.10	Mainly Alpha	Orthogonal Bundle	Butyryl-Coa Dehydrogenase, subunit A; domain 1	Acyl-CoA dehydrogenase/oxidase, N-terminal domain	4jekA01
1.20.140.10	Mainly Alpha	Up-down Bundle	Butyryl-CoA Dehydrogenase, subunit A; domain 3	Butyryl-CoA Dehydrogenase, subunit A, domain 3	4jekA03
2.40.110.10	Mainly Beta	Beta Barrel	Butyryl-CoA Dehydrogenase, subunit A; domain 2	Butyryl-CoA Dehydrogenase, subunit A, domain 2	4jekA02

1IVHA 3GNCA 3SCEA 1EGEA 4U83A 5K3GA 3D9EA 4KCFA 1FS7A 2E81A 2VIGA 2E80A 4WJYA 3LG1A 4L3ZA 1UDYA 4X28C 1W07A 4JEKA 5K3HA 2R0NA 2JIFA 1FS9A 2RDZA 3NF4A 2UXWA 3OWMA 4Q5BA 3EONA 3D9DA 3II9A 3LGQA 2R0MA 1SIRA 3AFFA 3BNFA 2C12A 3BNHA 3MDEA 1T9GA 2D29A 4XVXA 4Q4UA 4L38A 2ZAFA 3GM6A 4OO2A 2IX5A 5K3JA 2EBAA 4W9UA 1GU6A 1SIQA 2WBIA 4Q17A 1U8VA 3F29A 3X0YA 3D6BA 2CX9A 2VR0A 4IV6A 4DOYA 3P4TA 3M9VA 1FS8A 3UU9A 2FONA 4L3XA 2IX6A 2YYGA 2RFQA 3TTBA 2RF7A 3FCJA 2A1TA 4L3YA 3BNJA 3AFEA 3GQTA 1R2JA 3RKHA 3FO3A 2YYIA 2OT4A 3L1TA 2YYMA 1UKWA 2YYKA 3D1IA 2DVLA 2ZO5A 4N5FA 1QDBA 3MPIA 2DDHA 4HR3A 3HWCA 4Q1OA 3B96A 4G5EA 1JQIA 2YYJA 3UBRA 2OR0A 3BNGA 3PFDA 3MXLA 2PG0A 1WS9A 4O5MA 2Z1QA 3TORA 3SWOA 3MDDA 1OAHA 4RM7A 4M9AA 3MMOA 4NXLA 3SF6A 2JBSA 3R7KA 4L1FA 4Q5CA 3MPJA 3X0XA 4X28A 1EGDA 3D9FA 2C0UA 3MKHA 4P13A 4ZYJA 2JBRA 4KTOA 3OIBA 4IRNA 2REHA 3EOMA 1BUCA 5K3IA 2J7AA 2YYLA 4ZXVA 3SXQA 3S7WA 2JBTA 1RX0A 3OWAA 4Q0TA 3D9GA 1IS2A 1EGCA
chains in the Genus database with same CATH superfamily

1IVHA 4AKIA 3GNCA 1PI1A 3SCEA 1EGEA 2R03A 2BU7A 4U83A 5K3GA 2YGWA 3D9EA 4KCFA 1FS7A 4DZYA 1SC5A 2E81A 2OJQA 2XS1A 2VIGA 2E0AA 2E80A 4WJYA 3LG1A 2GBBA 2PO4A 5M4PA 4L3ZA 1UDYA 4AKHA 4V26A 4X28C 1W07A 4JEKA 5K3HA 2BTZA 5EZ3A 2R0NA 3C46A 2JIFA 5B6BA 1FS9A 2RDZA 3NF4A 2UXWA 2R02A 2BU8A 3OWMA 4H7QA 1RJ1A 3EONA 3D9DA 4MPEA 3II9A 1S26A 4Q5BA 3LGQA 2Q8FA 2R0MA 2VF1A 1SIRA 3AFFA 4LQSB 1XFVA 2C12A 2CJ5A 3BNFA 4MPCA 3BNHA 3MDEA 4FZ4A 2F6LA 4HKRA 4KSFA 1R3BA 4QICA 1T9GA 2D29A 4XVXA 1XFYA 4Q4UA 4L38A 2Q8IA 2ZAFA 2OEVA 3GM6A 4OO2A 2IX5A 5K3JA 1Y8PA 2XS8A 4V25A 2EBAA 4W9UA 1GU6A 1SIQA 2WBIA 1LVCA 3Q24A 4Q17A 4FF4A 1Y8NA 4JIOA 4JIZA 1U8VA 3F29A 2AO2A 3X0YA 3D6BA 2QR4A 2CX9A 4G97A 5GJWE 3TZ4A 2VR0A 4IV6A 4DOYA 3P4TA 3M9VA 1FS8A 2ZDYA 2FONA 4L3XA 3UU9A 2IX6A 2YYGA 2RFQA 3TTBA 2RF7A 3FCJA 2A1TA 4L3YA 3BNJA 3AFEA 4H81A 4E02A 4KS9A 1XFXA 2EBFX 3GQTA 1R2JA 3CE2A 2CJ8A 3RKHA 3TZ5A 1K8TA 1X8ZA 3FO3A 1XFZA 2FP2A 2YYIA 4KSAA 2OT4A 3TZ0A 2BU2A 2FP1A 3L1TA 2BU5A 2Q8GA 2YYMA 1X90A 1XFWA 1UKWA 2YYKA 5J71A 1K90A 1SK6A 3D1IA 5B5VA 2DVLA 2ZO5A 4P79A 4N5FA 1QDBA 5M4KA 3MPIA 2DDHA 4HR3A 3HWCA 3DJLA 2Q8HA 3X29A 4Q1OA 3B96A 4G5EA 1JQIA 2YYJA 3N0RA 3UBRA 5GJVE 5M4MA 3Q0AA 3C3LA 2OR0A 5BRMA 3BNGA 3PFDA 3MXLA 2PG0A 4LQQB 3U33A 1WS9A 3KMLA 4MP7A 2CJ7A 3D2RA 4O5MA 4AKGA 2Z1QA 3TORA 2BU6A 3SWOA 3MDDA 1GJVA 3CRKA 1GKZA 1OAHA 4RM7A 4M9AA 3MMOA 3TZ2A 3Q23A 1X91A 4E01A 4E00A 4NXLA 3SF6A 2PNRA 1GKXA 1RJ4A 2ZKJA 2JBSA 3R7KA 4L1FA 4Q5CA 5J6AA 3MPJA 2AZEA 1JM6A 3X0XA 2EBHX 4X28A 1XFUA 5M4NA 3Q22A 3VKHA 1EGDA 3VKGA 3D9FA 4FF1A 2C0UA 3VADA 3MKHA 4P13A 4FF3A 4ZYJA 2JBRA 4KTOA 3OIBA 4IRNA 2REHA 3EOMA 1Y8OA 2ZDXA 1BUCA 2CJ4A 4H85A 5BRKA 2LFWA 2HJNA 3C2PA 4FF2A 2OEXA 5K3IA 2J7AA 4AI6A 2YYLA 4ZXVA 1Y0VA 1RP3A 3SXQA 4HKSA 3S7WA 2JBTA 1RX0A 3OWAA 4Q0TA 3CRLA 1XG2B 4F0XA 2CJ6A 5B5WA 1K93A 4MP2A 2XQRB 1PK0A 2EC5A 3D9GA 4J1VA 4MPNA 2R05A 1IS2A 1EGCA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1IVH A;  3GNC A;  3SCE A;  1EGE A;  4U83 A;  5K3G A;  3D9E A;  4KCF A;  1FS7 A;  2E81 A;  2VIG A;  2E80 A;  4WJY A;  3LG1 A;  4L3Z A;  1UDY A;  4X28 C;  1W07 A;  4JEK A;  5K3H A;  2R0N A;  2JIF A;  1FS9 A;  2RDZ A;  3NF4 A;  2UXW A;  3OWM A;  4Q5B A;  3EON A;  3D9D A;  3II9 A;  3LGQ A;  2R0M A;  1SIR A;  3AFF A;  3BNF A;  2C12 A;  3BNH A;  3MDE A;  1T9G A;  2D29 A;  4XVX A;  4Q4U A;  4L38 A;  2ZAF A;  3GM6 A;  4OO2 A;  2IX5 A;  5K3J A;  2EBA A;  4W9U A;  1GU6 A;  1SIQ A;  2WBI A;  4Q17 A;  1U8V A;  3F29 A;  3X0Y A;  3D6B A;  2CX9 A;  2VR0 A;  4IV6 A;  4DOY A;  3P4T A;  3M9V A;  1FS8 A;  3UU9 A;  2FON A;  4L3X A;  2IX6 A;  2YYG A;  2RFQ A;  3TTB A;  2RF7 A;  3FCJ A;  2A1T A;  4L3Y A;  3BNJ A;  3AFE A;  3GQT A;  1R2J A;  3RKH A;  3FO3 A;  2YYI A;  2OT4 A;  3L1T A;  2YYM A;  1UKW A;  2YYK A;  3D1I A;  2DVL A;  2ZO5 A;  4N5F A;  1QDB A;  3MPI A;  2DDH A;  4HR3 A;  3HWC A;  4Q1O A;  3B96 A;  4G5E A;  1JQI A;  2YYJ A;  3UBR A;  2OR0 A;  3BNG A;  3PFD A;  3MXL A;  2PG0 A;  1WS9 A;  4O5M A;  2Z1Q A;  3TOR A;  3SWO A;  3MDD A;  1OAH A;  4RM7 A;  4M9A A;  3MMO A;  4NXL A;  3SF6 A;  2JBS A;  3R7K A;  4L1F A;  4Q5C A;  3MPJ A;  3X0X A;  4X28 A;  1EGD A;  3D9F A;  2C0U A;  3MKH A;  4P13 A;  4ZYJ A;  2JBR A;  4KTO A;  3OIB A;  4IRN A;  2REH A;  3EOM A;  1BUC A;  5K3I A;  2J7A A;  2YYL A;  4ZXV A;  3SXQ A;  3S7W A;  2JBT A;  1RX0 A;  3OWA A;  4Q0T A;  3D9G A;  1IS2 A;  1EGC A; 
#chains in the Genus database with same CATH topology
 1IVH A;  4AKI A;  3GNC A;  1PI1 A;  3SCE A;  1EGE A;  2R03 A;  2BU7 A;  4U83 A;  5K3G A;  2YGW A;  3D9E A;  4KCF A;  1FS7 A;  4DZY A;  1SC5 A;  2E81 A;  2OJQ A;  2XS1 A;  2VIG A;  2E0A A;  2E80 A;  4WJY A;  3LG1 A;  2GBB A;  2PO4 A;  5M4P A;  4L3Z A;  1UDY A;  4AKH A;  4V26 A;  4X28 C;  1W07 A;  4JEK A;  5K3H A;  2BTZ A;  5EZ3 A;  2R0N A;  3C46 A;  2JIF A;  5B6B A;  1FS9 A;  2RDZ A;  3NF4 A;  2UXW A;  2R02 A;  2BU8 A;  3OWM A;  4H7Q A;  1RJ1 A;  3EON A;  3D9D A;  4MPE A;  3II9 A;  1S26 A;  4Q5B A;  3LGQ A;  2Q8F A;  2R0M A;  2VF1 A;  1SIR A;  3AFF A;  4LQS B;  1XFV A;  2C12 A;  2CJ5 A;  3BNF A;  4MPC A;  3BNH A;  3MDE A;  4FZ4 A;  2F6L A;  4HKR A;  4KSF A;  1R3B A;  4QIC A;  1T9G A;  2D29 A;  4XVX A;  1XFY A;  4Q4U A;  4L38 A;  2Q8I A;  2ZAF A;  2OEV A;  3GM6 A;  4OO2 A;  2IX5 A;  5K3J A;  1Y8P A;  2XS8 A;  4V25 A;  2EBA A;  4W9U A;  1GU6 A;  1SIQ A;  2WBI A;  1LVC A;  3Q24 A;  4Q17 A;  4FF4 A;  1Y8N A;  4JIO A;  4JIZ A;  1U8V A;  3F29 A;  2AO2 A;  3X0Y A;  3D6B A;  2QR4 A;  2CX9 A;  4G97 A;  5GJW E;  3TZ4 A;  2VR0 A;  4IV6 A;  4DOY A;  3P4T A;  3M9V A;  1FS8 A;  2ZDY A;  2FON A;  4L3X A;  3UU9 A;  2IX6 A;  2YYG A;  2RFQ A;  3TTB A;  2RF7 A;  3FCJ A;  2A1T A;  4L3Y A;  3BNJ A;  3AFE A;  4H81 A;  4E02 A;  4KS9 A;  1XFX A;  2EBF X;  3GQT A;  1R2J A;  3CE2 A;  2CJ8 A;  3RKH A;  3TZ5 A;  1K8T A;  1X8Z A;  3FO3 A;  1XFZ A;  2FP2 A;  2YYI A;  4KSA A;  2OT4 A;  3TZ0 A;  2BU2 A;  2FP1 A;  3L1T A;  2BU5 A;  2Q8G A;  2YYM A;  1X90 A;  1XFW A;  1UKW A;  2YYK A;  5J71 A;  1K90 A;  1SK6 A;  3D1I A;  5B5V A;  2DVL A;  2ZO5 A;  4P79 A;  4N5F A;  1QDB A;  5M4K A;  3MPI A;  2DDH A;  4HR3 A;  3HWC A;  3DJL A;  2Q8H A;  3X29 A;  4Q1O A;  3B96 A;  4G5E A;  1JQI A;  2YYJ A;  3N0R A;  3UBR A;  5GJV E;  5M4M A;  3Q0A A;  3C3L A;  2OR0 A;  5BRM A;  3BNG A;  3PFD A;  3MXL A;  2PG0 A;  4LQQ B;  3U33 A;  1WS9 A;  3KML A;  4MP7 A;  2CJ7 A;  3D2R A;  4O5M A;  4AKG A;  2Z1Q A;  3TOR A;  2BU6 A;  3SWO A;  3MDD A;  1GJV A;  3CRK A;  1GKZ A;  1OAH A;  4RM7 A;  4M9A A;  3MMO A;  3TZ2 A;  3Q23 A;  1X91 A;  4E01 A;  4E00 A;  4NXL A;  3SF6 A;  2PNR A;  1GKX A;  1RJ4 A;  2ZKJ A;  2JBS A;  3R7K A;  4L1F A;  4Q5C A;  5J6A A;  3MPJ A;  2AZE A;  1JM6 A;  3X0X A;  2EBH X;  4X28 A;  1XFU A;  5M4N A;  3Q22 A;  3VKH A;  1EGD A;  3VKG A;  3D9F A;  4FF1 A;  2C0U A;  3VAD A;  3MKH A;  4P13 A;  4FF3 A;  4ZYJ A;  2JBR A;  4KTO A;  3OIB A;  4IRN A;  2REH A;  3EOM A;  1Y8O A;  2ZDX A;  1BUC A;  2CJ4 A;  4H85 A;  5BRK A;  2LFW A;  2HJN A;  3C2P A;  4FF2 A;  2OEX A;  5K3I A;  2J7A A;  4AI6 A;  2YYL A;  4ZXV A;  1Y0V A;  1RP3 A;  3SXQ A;  4HKS A;  3S7W A;  2JBT A;  1RX0 A;  3OWA A;  4Q0T A;  3CRL A;  1XG2 B;  4F0X A;  2CJ6 A;  5B5W A;  1K93 A;  4MP2 A;  2XQR B;  1PK0 A;  2EC5 A;  3D9G A;  4J1V A;  4MPN A;  2R05 A;  1IS2 A;  1EGC A; 
#chains in the Genus database with same CATH homology
 1IVH A;  3GNC A;  3SCE A;  1EGE A;  4U83 A;  5K3G A;  3D9E A;  4KCF A;  1FS7 A;  2E81 A;  2VIG A;  2E80 A;  4WJY A;  3LG1 A;  4L3Z A;  1UDY A;  4X28 C;  1W07 A;  4JEK A;  5K3H A;  2R0N A;  2JIF A;  1FS9 A;  2RDZ A;  3NF4 A;  2UXW A;  3OWM A;  4Q5B A;  3EON A;  3D9D A;  3II9 A;  3LGQ A;  2R0M A;  1SIR A;  3AFF A;  3BNF A;  2C12 A;  3BNH A;  3MDE A;  1T9G A;  2D29 A;  4XVX A;  4Q4U A;  4L38 A;  2ZAF A;  3GM6 A;  4OO2 A;  2IX5 A;  5K3J A;  2EBA A;  4W9U A;  1GU6 A;  1SIQ A;  2WBI A;  4Q17 A;  1U8V A;  3F29 A;  3X0Y A;  3D6B A;  2CX9 A;  2VR0 A;  4IV6 A;  4DOY A;  3P4T A;  3M9V A;  1FS8 A;  3UU9 A;  2FON A;  4L3X A;  2IX6 A;  2YYG A;  2RFQ A;  3TTB A;  2RF7 A;  3FCJ A;  2A1T A;  4L3Y A;  3BNJ A;  3AFE A;  3GQT A;  1R2J A;  3RKH A;  3FO3 A;  2YYI A;  2OT4 A;  3L1T A;  2YYM A;  1UKW A;  2YYK A;  3D1I A;  2DVL A;  2ZO5 A;  4N5F A;  1QDB A;  3MPI A;  2DDH A;  4HR3 A;  3HWC A;  4Q1O A;  3B96 A;  4G5E A;  1JQI A;  2YYJ A;  3UBR A;  2OR0 A;  3BNG A;  3PFD A;  3MXL A;  2PG0 A;  1WS9 A;  4O5M A;  2Z1Q A;  3TOR A;  3SWO A;  3MDD A;  1OAH A;  4RM7 A;  4M9A A;  3MMO A;  4NXL A;  3SF6 A;  2JBS A;  3R7K A;  4L1F A;  4Q5C A;  3MPJ A;  3X0X A;  4X28 A;  1EGD A;  3D9F A;  2C0U A;  3MKH A;  4P13 A;  4ZYJ A;  2JBR A;  4KTO A;  3OIB A;  4IRN A;  2REH A;  3EOM A;  1BUC A;  5K3I A;  2J7A A;  2YYL A;  4ZXV A;  3SXQ A;  3S7W A;  2JBT A;  1RX0 A;  3OWA A;  4Q0T A;  3D9G A;  1IS2 A;  1EGC A;

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similar chains in the Genus database (?% sequence similarity)

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#similar chains, but unknotted
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4JEKA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations