4N5FA

Crystal structure of a putative acyl-coa dehydrogenase with bound fadh2 from burkholderia cenocepacia j2315
Total Genus 138
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
138
sequence length
378
structure length
378
Chain Sequence
HMDELYTEDQRMIRDAARAFATEMLAPNAAQWDHDAHLPDAIVAQLGELGLLGMIVPQELGGSYTDYVAYALAMEEVAAGDAACATMMSVHNSVGCGPILGFGTPAQKDRWLADMAAGRVIGAFCLTEPHAGSEANNLRTRAELRDGQWVLNGAKQFVTNGQRAGVAIVFAMTDPEAGKRGISAFLVPTDTPGFIVGKPEKKMGIRASDTCPITFENCAIPEDNLLGNRGEGLKIALSNLEGGRIGIAAQALGIARAAFDKARRYAGERVQFGKPIAEHQAIQQKLADMAVQINAARLLVHHAAKLRTAGLPCLSEASQAKLFASEMAERVCSDAIQIHGGYGYLVDYEVERHYRDARITQIYEGTSEVQRMVIARQL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
source organism Burkholderia cenocepacia
publication title Crystal Structure of a Putative acyl-CoA dehydrogenase with bound FADH2 from Burkholderia cenocepacia J2315
rcsb
molecule keywords Putative acyl-CoA dehydrogenase
total genus 138
structure length 378
sequence length 378
chains with identical sequence B
ec nomenclature ec 1.3.99.-:
pdb deposition date 2013-10-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 4n5fA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 4n5fA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 4n5fA02
3D9GA 4ZYJA 5K3JA 2RDZA 1T9GA 1SIRA 2CX9A 3D9EA 1QDBA 2OT4A 2RF7A 4N5FA 3MDDA 1EGCA 3FCJA 4U83A 4L3ZA 3R7KA 2C12A 4IV6A 3II9A 1IVHA 2A1TA 3RKHA 3MPIA 4ZXVA 4L38A 3GQTA 4Q5BA 2JBTA 2R0MA 3BNHA 3TORA 2JBRA 2E80A 2YYGA 1FS7A 3X0XA 4L1FA 4Q1OA 3AFEA 3M9VA 4Q0TA 2JIFA 4NXLA 1EGEA 3BNJA 4HR3A 4JEKA 1W07A 3HWCA 2YYJA 3OWMA 3SCEA 5K3HA 2YYIA 2OR0A 1JQIA 3S7WA 4OO2A 1U8VA 4X28C 3OIBA 1EGDA 3GM6A 2YYKA 3NF4A 4Q5CA 3TTBA 2E81A 4L3XA 3UU9A 1FS8A 3D9FA 3AFFA 4IRNA 3BNGA 4Q17A 4O5MA 1RX0A 3OWAA 2J7AA 2JBSA 3F29A 4DOYA 3L1TA 3P4TA 1IS2A 2REHA 3PFDA 2YYLA 1UDYA 2DVLA 2IX5A 4X28A 4P13A 3SXQA 2FONA 1UKWA 4M9AA 3MPJA 2PG0A 3UBRA 4L3YA 2YYMA 3B96A 1FS9A 2VIGA 1OAHA 3D9DA 4WJYA 1R2JA 3FO3A 2VR0A 2DDHA 3EONA 5K3IA 4G5EA 3MMOA 2RFQA 3MDEA 3MXLA 5K3GA 3X0YA 2ZO5A 4W9UA 4KCFA 3LGQA 3D1IA 4Q4UA 1BUCA 3EOMA 3D6BA 3SF6A 1WS9A 3GNCA 2WBIA 2IX6A 2ZAFA 4RM7A 3LG1A 3BNFA 1SIQA 4XVXA 2R0NA 2C0UA 2Z1QA 3SWOA 3MKHA 4KTOA 1GU6A 2EBAA 2UXWA 2D29A
chains in the Genus database with same CATH superfamily
3D9GA 3N0RA 4ZYJA 2CJ8A 5K3JA 1GKXA 1T9GA 2RDZA 3CRKA 2XS1A 3VADA 5B5WA 1SC5A 1SIRA 2CX9A 3D9EA 4MPCA 3TZ0A 1QDBA 2OT4A 2RF7A 4N5FA 3MDDA 3TZ4A 4AKIA 1EGCA 2BU2A 3FCJA 4U83A 1XFYA 2BU6A 4V26A 5BRKA 5J6AA 4L3ZA 3R7KA 3U33A 2C12A 4IV6A 2BU5A 3II9A 2BU7A 1IVHA 2A1TA 3RKHA 3MPIA 1PI1A 2BU8A 4ZXVA 1Y8OA 4L38A 3GQTA 4HKRA 2PNRA 4Q5BA 2LFWA 2JBTA 2R0MA 2CJ7A 3BNHA 4H7QA 3TORA 2JBRA 1R3BA 4LQQB 1X8ZA 2E80A 4G97A 5M4MA 2YYGA 1FS7A 4KSAA 3X0XA 4AKHA 3CE2A 5EZ3A 4L1FA 3Q24A 4H81A 2XS8A 2E0AA 3AFEA 3M9VA 4Q1OA 4FF4A 4Q0TA 2JIFA 2R03A 3C3LA 5GJVE 4NXLA 2CJ4A 1EGEA 2YGWA 1Y8PA 2ZDYA 3BNJA 4HR3A 4JEKA 1W07A 2XQRB 4MP7A 2OEVA 2EC5A 1X91A 2AZEA 2CJ5A 1XFWA 3HWCA 1XFZA 1XFVA 2YYJA 3Q22A 2R02A 1RJ1A 2AO2A 4JIOA 3OWMA 3SCEA 1X90A 1K8TA 5K3HA 1XFXA 2EBFX 2YYIA 2Q8HA 2FP1A 2OR0A 1JQIA 3S7WA 4OO2A 1U8VA 4X28C 5J71A 3OIBA 1EGDA 3GM6A 1GJVA 2YYKA 3NF4A 1Y0VA 4Q5CA 3TTBA 4KS9A 2E81A 4L3XA 3UU9A 2PO4A 5B6BA 1FS8A 3D9FA 3AFFA 1GKZA 4IRNA 3BNGA 4Q17A 1S26A 4O5MA 3TZ2A 3CRLA 1RX0A 3OWAA 2J7AA 2VF1A 2JBSA 3F29A 4DOYA 2BTZA 4HKSA 4FF3A 3L1TA 5M4KA 4FF2A 1Y8NA 3VKGA 3P4TA 1IS2A 2REHA 3C46A 4F0XA 3PFDA 2YYLA 3D2RA 4AKGA 1UDYA 2GBBA 5BRMA 2DVLA 2IX5A 4X28A 1PK0A 4P13A 1K93A 4P79A 2FONA 3SXQA 3VKHA 1UKWA 4J1VA 4M9AA 3C2PA 4DZYA 3MPJA 2PG0A 3UBRA 4L3YA 2F6LA 2YYMA 3B96A 4QICA 1FS9A 2VIGA 1OAHA 3D9DA 4WJYA 1R2JA 3Q23A 2ZDXA 2QR4A 2VR0A 1XG2B 3FO3A 1K90A 2DDHA 3EONA 5K3IA 4G5EA 3MMOA 2Q8FA 2RFQA 4JIZA 4E00A 3MDEA 5B5VA 3MXLA 5K3GA 2EBHX 5GJWE 3KMLA 3X0YA 2HJNA 2ZO5A 4W9UA 4V25A 2R05A 3DJLA 4KCFA 3LGQA 3D1IA 4Q4UA 4E01A 1BUCA 3EOMA 3D6BA 2FP2A 3SF6A 1WS9A 5M4PA 4MPNA 1XFUA 2OEXA 3GNCA 2WBIA 2IX6A 2CJ6A 2ZAFA 4RM7A 3LG1A 3X29A 4AI6A 3BNFA 2Q8GA 1SIQA 1RJ4A 4MPEA 4XVXA 2R0NA 2C0UA 2Z1QA 1RP3A 3SWOA 1SK6A 2ZKJA 3Q0AA 2Q8IA 3MKHA 4MP2A 4LQSB 4KTOA 4FF1A 1GU6A 4H85A 4FZ4A 2EBAA 1LVCA 3TZ5A 5M4NA 4KSFA 2UXWA 4E02A 2OJQA 1JM6A 2D29A
chains in the Genus database with same CATH topology
3D9GA 4ZYJA 5K3JA 2RDZA 1T9GA 1SIRA 2CX9A 3D9EA 1QDBA 2OT4A 2RF7A 4N5FA 3MDDA 1EGCA 3FCJA 4U83A 4L3ZA 3R7KA 2C12A 4IV6A 3II9A 1IVHA 2A1TA 3RKHA 3MPIA 4ZXVA 4L38A 3GQTA 4Q5BA 2JBTA 2R0MA 3BNHA 3TORA 2JBRA 2E80A 2YYGA 1FS7A 3X0XA 4L1FA 4Q1OA 3AFEA 3M9VA 4Q0TA 2JIFA 4NXLA 1EGEA 3BNJA 4HR3A 4JEKA 1W07A 3HWCA 2YYJA 3OWMA 3SCEA 5K3HA 2YYIA 2OR0A 1JQIA 3S7WA 4OO2A 1U8VA 4X28C 3OIBA 1EGDA 3GM6A 2YYKA 3NF4A 4Q5CA 3TTBA 2E81A 4L3XA 3UU9A 1FS8A 3D9FA 3AFFA 4IRNA 3BNGA 4Q17A 4O5MA 1RX0A 3OWAA 2J7AA 2JBSA 3F29A 4DOYA 3L1TA 3P4TA 1IS2A 2REHA 3PFDA 2YYLA 1UDYA 2DVLA 2IX5A 4X28A 4P13A 3SXQA 2FONA 1UKWA 4M9AA 3MPJA 2PG0A 3UBRA 4L3YA 2YYMA 3B96A 1FS9A 2VIGA 1OAHA 3D9DA 4WJYA 1R2JA 3FO3A 2VR0A 2DDHA 3EONA 5K3IA 4G5EA 3MMOA 2RFQA 3MDEA 3MXLA 5K3GA 3X0YA 2ZO5A 4W9UA 4KCFA 3LGQA 3D1IA 4Q4UA 1BUCA 3EOMA 3D6BA 3SF6A 1WS9A 3GNCA 2WBIA 2IX6A 2ZAFA 4RM7A 3LG1A 3BNFA 1SIQA 4XVXA 2R0NA 2C0UA 2Z1QA 3SWOA 3MKHA 4KTOA 1GU6A 2EBAA 2UXWA 2D29A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3D9G A;  4ZYJ A;  5K3J A;  2RDZ A;  1T9G A;  1SIR A;  2CX9 A;  3D9E A;  1QDB A;  2OT4 A;  2RF7 A;  4N5F A;  3MDD A;  1EGC A;  3FCJ A;  4U83 A;  4L3Z A;  3R7K A;  2C12 A;  4IV6 A;  3II9 A;  1IVH A;  2A1T A;  3RKH A;  3MPI A;  4ZXV A;  4L38 A;  3GQT A;  4Q5B A;  2JBT A;  2R0M A;  3BNH A;  3TOR A;  2JBR A;  2E80 A;  2YYG A;  1FS7 A;  3X0X A;  4L1F A;  4Q1O A;  3AFE A;  3M9V A;  4Q0T A;  2JIF A;  4NXL A;  1EGE A;  3BNJ A;  4HR3 A;  4JEK A;  1W07 A;  3HWC A;  2YYJ A;  3OWM A;  3SCE A;  5K3H A;  2YYI A;  2OR0 A;  1JQI A;  3S7W A;  4OO2 A;  1U8V A;  4X28 C;  3OIB A;  1EGD A;  3GM6 A;  2YYK A;  3NF4 A;  4Q5C A;  3TTB A;  2E81 A;  4L3X A;  3UU9 A;  1FS8 A;  3D9F A;  3AFF A;  4IRN A;  3BNG A;  4Q17 A;  4O5M A;  1RX0 A;  3OWA A;  2J7A A;  2JBS A;  3F29 A;  4DOY A;  3L1T A;  3P4T A;  1IS2 A;  2REH A;  3PFD A;  2YYL A;  1UDY A;  2DVL A;  2IX5 A;  4X28 A;  4P13 A;  3SXQ A;  2FON A;  1UKW A;  4M9A A;  3MPJ A;  2PG0 A;  3UBR A;  4L3Y A;  2YYM A;  3B96 A;  1FS9 A;  2VIG A;  1OAH A;  3D9D A;  4WJY A;  1R2J A;  3FO3 A;  2VR0 A;  2DDH A;  3EON A;  5K3I A;  4G5E A;  3MMO A;  2RFQ A;  3MDE A;  3MXL A;  5K3G A;  3X0Y A;  2ZO5 A;  4W9U A;  4KCF A;  3LGQ A;  3D1I A;  4Q4U A;  1BUC A;  3EOM A;  3D6B A;  3SF6 A;  1WS9 A;  3GNC A;  2WBI A;  2IX6 A;  2ZAF A;  4RM7 A;  3LG1 A;  3BNF A;  1SIQ A;  4XVX A;  2R0N A;  2C0U A;  2Z1Q A;  3SWO A;  3MKH A;  4KTO A;  1GU6 A;  2EBA A;  2UXW A;  2D29 A; 
#chains in the Genus database with same CATH topology
 3D9G A;  3N0R A;  4ZYJ A;  2CJ8 A;  5K3J A;  1GKX A;  1T9G A;  2RDZ A;  3CRK A;  2XS1 A;  3VAD A;  5B5W A;  1SC5 A;  1SIR A;  2CX9 A;  3D9E A;  4MPC A;  3TZ0 A;  1QDB A;  2OT4 A;  2RF7 A;  4N5F A;  3MDD A;  3TZ4 A;  4AKI A;  1EGC A;  2BU2 A;  3FCJ A;  4U83 A;  1XFY A;  2BU6 A;  4V26 A;  5BRK A;  5J6A A;  4L3Z A;  3R7K A;  3U33 A;  2C12 A;  4IV6 A;  2BU5 A;  3II9 A;  2BU7 A;  1IVH A;  2A1T A;  3RKH A;  3MPI A;  1PI1 A;  2BU8 A;  4ZXV A;  1Y8O A;  4L38 A;  3GQT A;  4HKR A;  2PNR A;  4Q5B A;  2LFW A;  2JBT A;  2R0M A;  2CJ7 A;  3BNH A;  4H7Q A;  3TOR A;  2JBR A;  1R3B A;  4LQQ B;  1X8Z A;  2E80 A;  4G97 A;  5M4M A;  2YYG A;  1FS7 A;  4KSA A;  3X0X A;  4AKH A;  3CE2 A;  5EZ3 A;  4L1F A;  3Q24 A;  4H81 A;  2XS8 A;  2E0A A;  3AFE A;  3M9V A;  4Q1O A;  4FF4 A;  4Q0T A;  2JIF A;  2R03 A;  3C3L A;  5GJV E;  4NXL A;  2CJ4 A;  1EGE A;  2YGW A;  1Y8P A;  2ZDY A;  3BNJ A;  4HR3 A;  4JEK A;  1W07 A;  2XQR B;  4MP7 A;  2OEV A;  2EC5 A;  1X91 A;  2AZE A;  2CJ5 A;  1XFW A;  3HWC A;  1XFZ A;  1XFV A;  2YYJ A;  3Q22 A;  2R02 A;  1RJ1 A;  2AO2 A;  4JIO A;  3OWM A;  3SCE A;  1X90 A;  1K8T A;  5K3H A;  1XFX A;  2EBF X;  2YYI A;  2Q8H A;  2FP1 A;  2OR0 A;  1JQI A;  3S7W A;  4OO2 A;  1U8V A;  4X28 C;  5J71 A;  3OIB A;  1EGD A;  3GM6 A;  1GJV A;  2YYK A;  3NF4 A;  1Y0V A;  4Q5C A;  3TTB A;  4KS9 A;  2E81 A;  4L3X A;  3UU9 A;  2PO4 A;  5B6B A;  1FS8 A;  3D9F A;  3AFF A;  1GKZ A;  4IRN A;  3BNG A;  4Q17 A;  1S26 A;  4O5M A;  3TZ2 A;  3CRL A;  1RX0 A;  3OWA A;  2J7A A;  2VF1 A;  2JBS A;  3F29 A;  4DOY A;  2BTZ A;  4HKS A;  4FF3 A;  3L1T A;  5M4K A;  4FF2 A;  1Y8N A;  3VKG A;  3P4T A;  1IS2 A;  2REH A;  3C46 A;  4F0X A;  3PFD A;  2YYL A;  3D2R A;  4AKG A;  1UDY A;  2GBB A;  5BRM A;  2DVL A;  2IX5 A;  4X28 A;  1PK0 A;  4P13 A;  1K93 A;  4P79 A;  2FON A;  3SXQ A;  3VKH A;  1UKW A;  4J1V A;  4M9A A;  3C2P A;  4DZY A;  3MPJ A;  2PG0 A;  3UBR A;  4L3Y A;  2F6L A;  2YYM A;  3B96 A;  4QIC A;  1FS9 A;  2VIG A;  1OAH A;  3D9D A;  4WJY A;  1R2J A;  3Q23 A;  2ZDX A;  2QR4 A;  2VR0 A;  1XG2 B;  3FO3 A;  1K90 A;  2DDH A;  3EON A;  5K3I A;  4G5E A;  3MMO A;  2Q8F A;  2RFQ A;  4JIZ A;  4E00 A;  3MDE A;  5B5V A;  3MXL A;  5K3G A;  2EBH X;  5GJW E;  3KML A;  3X0Y A;  2HJN A;  2ZO5 A;  4W9U A;  4V25 A;  2R05 A;  3DJL A;  4KCF A;  3LGQ A;  3D1I A;  4Q4U A;  4E01 A;  1BUC A;  3EOM A;  3D6B A;  2FP2 A;  3SF6 A;  1WS9 A;  5M4P A;  4MPN A;  1XFU A;  2OEX A;  3GNC A;  2WBI A;  2IX6 A;  2CJ6 A;  2ZAF A;  4RM7 A;  3LG1 A;  3X29 A;  4AI6 A;  3BNF A;  2Q8G A;  1SIQ A;  1RJ4 A;  4MPE A;  4XVX A;  2R0N A;  2C0U A;  2Z1Q A;  1RP3 A;  3SWO A;  1SK6 A;  2ZKJ A;  3Q0A A;  2Q8I A;  3MKH A;  4MP2 A;  4LQS B;  4KTO A;  4FF1 A;  1GU6 A;  4H85 A;  4FZ4 A;  2EBA A;  1LVC A;  3TZ5 A;  5M4N A;  4KSF A;  2UXW A;  4E02 A;  2OJQ A;  1JM6 A;  2D29 A; 
#chains in the Genus database with same CATH homology
 3D9G A;  4ZYJ A;  5K3J A;  2RDZ A;  1T9G A;  1SIR A;  2CX9 A;  3D9E A;  1QDB A;  2OT4 A;  2RF7 A;  4N5F A;  3MDD A;  1EGC A;  3FCJ A;  4U83 A;  4L3Z A;  3R7K A;  2C12 A;  4IV6 A;  3II9 A;  1IVH A;  2A1T A;  3RKH A;  3MPI A;  4ZXV A;  4L38 A;  3GQT A;  4Q5B A;  2JBT A;  2R0M A;  3BNH A;  3TOR A;  2JBR A;  2E80 A;  2YYG A;  1FS7 A;  3X0X A;  4L1F A;  4Q1O A;  3AFE A;  3M9V A;  4Q0T A;  2JIF A;  4NXL A;  1EGE A;  3BNJ A;  4HR3 A;  4JEK A;  1W07 A;  3HWC A;  2YYJ A;  3OWM A;  3SCE A;  5K3H A;  2YYI A;  2OR0 A;  1JQI A;  3S7W A;  4OO2 A;  1U8V A;  4X28 C;  3OIB A;  1EGD A;  3GM6 A;  2YYK A;  3NF4 A;  4Q5C A;  3TTB A;  2E81 A;  4L3X A;  3UU9 A;  1FS8 A;  3D9F A;  3AFF A;  4IRN A;  3BNG A;  4Q17 A;  4O5M A;  1RX0 A;  3OWA A;  2J7A A;  2JBS A;  3F29 A;  4DOY A;  3L1T A;  3P4T A;  1IS2 A;  2REH A;  3PFD A;  2YYL A;  1UDY A;  2DVL A;  2IX5 A;  4X28 A;  4P13 A;  3SXQ A;  2FON A;  1UKW A;  4M9A A;  3MPJ A;  2PG0 A;  3UBR A;  4L3Y A;  2YYM A;  3B96 A;  1FS9 A;  2VIG A;  1OAH A;  3D9D A;  4WJY A;  1R2J A;  3FO3 A;  2VR0 A;  2DDH A;  3EON A;  5K3I A;  4G5E A;  3MMO A;  2RFQ A;  3MDE A;  3MXL A;  5K3G A;  3X0Y A;  2ZO5 A;  4W9U A;  4KCF A;  3LGQ A;  3D1I A;  4Q4U A;  1BUC A;  3EOM A;  3D6B A;  3SF6 A;  1WS9 A;  3GNC A;  2WBI A;  2IX6 A;  2ZAF A;  4RM7 A;  3LG1 A;  3BNF A;  1SIQ A;  4XVX A;  2R0N A;  2C0U A;  2Z1Q A;  3SWO A;  3MKH A;  4KTO A;  1GU6 A;  2EBA A;  2UXW A;  2D29 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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