4ZYJA

Streptomyces peucetius nitrososynthase dnmz in tdp-bound state
Total Genus 143
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
143
sequence length
395
structure length
388
Chain Sequence
GVLADNGLCEPKTPAGRRLLDLLERYLPALEAESRDNDREATLPVHLFDRMRKEGVLGATVPEDLGGLGVHSLHDVALALARIAGRDAGVALALHMQFSRGLTLDFEWRHGAPSTRPLAEDLLRQMGAGEAVICGAVKDVRGTTVLTRDGSYRLNGRKTLVSMAGIATHYVVSTRLEEAPVRLAAPVVARTTPGLTVLDNWDGMGMRSSGSVDIVFDGCPVDRDRVLPRGEPDDAALAGQTVSSIAMLGIYVGIAEAARRIALTELRRRGGAPAGVRTTVAEIDARLFALHTAVASALTTADRLADDLSGDLAARGRAMMTPFQYAKLLVNRHSVGVVDDCLMLVGGAGYSNSHPLARLYRDVRAGGFMHPYNFTDGVDYLSEVALGR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of DnmZ, a nitrososynthase in the Streptomyces peucetius anthracycline biosynthetic pathway.
pubmed doi rcsb
source organism Streptomyces peucetius
molecule tags Oxidoreductase
molecule keywords DnmZ
total genus 143
structure length 388
sequence length 395
chains with identical sequence B, C, D
ec nomenclature ec 1.14.13.187: L-evernosamine nitrososynthase.
pdb deposition date 2015-05-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 4zyjA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 4zyjA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 4zyjA02
1WS9A 3BNFA 3LG1A 2D29A 1T9GA 2UXWA 2RF7A 4WJYA 2YYGA 3FCJA 2J7AA 3BNGA 1OAHA 3OWMA 1RX0A 3OIBA 3GNCA 2PG0A 2YYMA 4IRNA 4L3YA 4N5FA 1R2JA 2ZO5A 2IX6A 4M9AA 2VIGA 3S7WA 5K3IA 4DOYA 1BUCA 1FS7A 4Q4UA 3SCEA 4XVXA 2JBTA 4ZYJA 1EGEA 1QDBA 1W07A 2WBIA 3RKHA 3D9GA 3PFDA 3B96A 4HR3A 1SIQA 4JEKA 4Q0TA 1IS2A 3BNJA 3P4TA 3EOMA 5K3GA 2YYLA 2DVLA 2R0NA 3II9A 3MXLA 3FO3A 1EGDA 3LGQA 2E81A 3UBRA 2C0UA 4OO2A 1GU6A 4RM7A 3MDDA 2E80A 4U83A 3MDEA 3L1TA 4NXLA 3D9FA 2IX5A 2EBAA 4L3ZA 4Q5CA 4IV6A 1UDYA 2REHA 1UKWA 2DDHA 4Q1OA 3MPIA 3NF4A 4ZXVA 4Q5BA 2ZAFA 4P13A 3BNHA 3X0YA 3SWOA 2RDZA 2R0MA 2RFQA 3M9VA 3UU9A 3MKHA 3AFFA 3SF6A 2OT4A 2JBRA 2OR0A 4O5MA 3F29A 4X28C 4KCFA 2FONA 3D1IA 2YYKA 3TORA 3GQTA 3D9EA 2VR0A 2A1TA 1SIRA 1FS9A 5K3JA 2YYIA 3SXQA 3TTBA 2JIFA 1JQIA 3GM6A 4X28A 4Q17A 3X0XA 1IVHA 3OWAA 1U8VA 1EGCA 4L1FA 3HWCA 1FS8A 3MPJA 4L3XA 3AFEA 3R7KA 2YYJA 3D6BA 4KTOA 3MMOA 4G5EA 2CX9A 2Z1QA 2C12A 4L38A 4W9UA 3D9DA 2JBSA 5K3HA 3EONA
chains in the Genus database with same CATH superfamily
1WS9A 3BNFA 3LG1A 2ZDXA 1GJVA 1XG2B 1Y8OA 2D29A 1T9GA 2UXWA 2RF7A 4WJYA 2YYGA 1S26A 4P79A 3TZ4A 4E01A 3FCJA 2J7AA 3BNGA 1OAHA 3OWMA 1RX0A 3OIBA 2PNRA 3GNCA 2PG0A 1PK0A 2OJQA 4IRNA 2YYMA 2EBHX 4N5FA 1R2JA 2PO4A 4H85A 4L3YA 1GKXA 4FF3A 2ZO5A 1X90A 2IX6A 4M9AA 2BU5A 2VIGA 4H81A 4MPCA 2CJ4A 5B5VA 3X29A 3C46A 3S7WA 5K3IA 3CE2A 5J71A 4DOYA 5M4PA 1BUCA 2BU6A 1FS7A 4Q4UA 3SCEA 4XVXA 4AKIA 2JBTA 4ZYJA 1EGEA 4MP2A 3C3LA 4QICA 4DZYA 3U33A 1QDBA 1W07A 5B6BA 2WBIA 1RJ1A 3RKHA 3D9GA 3PFDA 3B96A 2CJ8A 2GBBA 5J6AA 3KMLA 4HR3A 1SIQA 5GJVE 4JEKA 4Q0TA 1IS2A 3BNJA 2OEVA 4F0XA 3P4TA 1X91A 1Y0VA 2Q8FA 1GKZA 4E00A 5M4MA 3EOMA 5K3GA 2XS8A 1RJ4A 4FZ4A 2YYLA 2DVLA 2R0NA 3II9A 3MXLA 1Y8PA 1EGDA 2FP1A 2R05A 3FO3A 3LGQA 2XS1A 4H7QA 5BRMA 2E81A 3UBRA 3VADA 2AZEA 4J1VA 2C0UA 4OO2A 1GU6A 1XFZA 5BRKA 4RM7A 4V25A 3MDDA 2VF1A 1K90A 2E80A 4U83A 3MDEA 3L1TA 4NXLA 3D9FA 3VKHA 2IX5A 2EBAA 2FP2A 4L3ZA 4Q5CA 4IV6A 1UDYA 2REHA 1UKWA 1SK6A 5GJWE 2DDHA 2CJ6A 3Q22A 5M4KA 2ZKJA 4FF2A 4FF1A 4Q1OA 3MPIA 3NF4A 3TZ0A 2Q8GA 4ZXVA 4Q5BA 2ZAFA 4P13A 1RP3A 2QR4A 4KSFA 4JIOA 3BNHA 5B5WA 2BU7A 2F6LA 3X0YA 3SWOA 2RDZA 2R0MA 4MP7A 2RFQA 3M9VA 3UU9A 2BU2A 3CRLA 3MKHA 3AFFA 3SF6A 2OT4A 2LFWA 2YGWA 4HKSA 2JBRA 2R02A 4MPNA 3TZ2A 2ZDYA 2AO2A 2OR0A 4O5MA 1PI1A 3D2RA 4X28C 4KCFA 3F29A 3TZ5A 2BTZA 2FONA 3D1IA 2YYKA 3CRKA 2Q8HA 3GQTA 3TORA 3D9EA 1X8ZA 2VR0A 4G97A 2EC5A 2A1TA 3N0RA 1SIRA 1FS9A 5K3JA 2YYIA 4JIZA 3SXQA 3TTBA 5EZ3A 2JIFA 2BU8A 4LQSB 1JQIA 1R3BA 4AI6A 3Q0AA 1Y8NA 4X28A 3GM6A 2OEXA 4Q17A 2Q8IA 3X0XA 1IVHA 3OWAA 1U8VA 3Q24A 1EGCA 4L1FA 3HWCA 1XFUA 1FS8A 2XQRB 3MPJA 4L3XA 3AFEA 3R7KA 2YYJA 4V26A 3D6BA 2R03A 4KTOA 5M4NA 2CJ7A 3MMOA 4G5EA 4HKRA 4LQQB 2EBFX 1SC5A 4AKHA 1XFXA 1XFVA 1K93A 2CX9A 4KS9A 3VKGA 1LVCA 3Q23A 2Z1QA 2E0AA 2C12A 2HJNA 4FF4A 2CJ5A 4MPEA 4L38A 4E02A 1JM6A 1XFYA 4W9UA 3D9DA 1XFWA 4KSAA 4AKGA 2JBSA 5K3HA 3C2PA 3EONA 3DJLA 1K8TA
chains in the Genus database with same CATH topology
1WS9A 3BNFA 3LG1A 2D29A 1T9GA 2UXWA 2RF7A 4WJYA 2YYGA 3FCJA 2J7AA 3BNGA 1OAHA 3OWMA 1RX0A 3OIBA 3GNCA 2PG0A 2YYMA 4IRNA 4L3YA 4N5FA 1R2JA 2ZO5A 2IX6A 4M9AA 2VIGA 3S7WA 5K3IA 4DOYA 1BUCA 1FS7A 4Q4UA 3SCEA 4XVXA 2JBTA 4ZYJA 1EGEA 1QDBA 1W07A 2WBIA 3RKHA 3D9GA 3PFDA 3B96A 4HR3A 1SIQA 4JEKA 4Q0TA 1IS2A 3BNJA 3P4TA 3EOMA 5K3GA 2YYLA 2DVLA 2R0NA 3II9A 3MXLA 3FO3A 1EGDA 3LGQA 2E81A 3UBRA 2C0UA 4OO2A 1GU6A 4RM7A 3MDDA 2E80A 4U83A 3MDEA 3L1TA 4NXLA 3D9FA 2IX5A 2EBAA 4L3ZA 4Q5CA 4IV6A 1UDYA 2REHA 1UKWA 2DDHA 4Q1OA 3MPIA 3NF4A 4ZXVA 4Q5BA 2ZAFA 4P13A 3BNHA 3X0YA 3SWOA 2RDZA 2R0MA 2RFQA 3M9VA 3UU9A 3MKHA 3AFFA 3SF6A 2OT4A 2JBRA 2OR0A 4O5MA 3F29A 4X28C 4KCFA 2FONA 3D1IA 2YYKA 3TORA 3GQTA 3D9EA 2VR0A 2A1TA 1SIRA 1FS9A 5K3JA 2YYIA 3SXQA 3TTBA 2JIFA 1JQIA 3GM6A 4X28A 4Q17A 3X0XA 1IVHA 3OWAA 1U8VA 1EGCA 4L1FA 3HWCA 1FS8A 3MPJA 4L3XA 3AFEA 3R7KA 2YYJA 3D6BA 4KTOA 3MMOA 4G5EA 2CX9A 2Z1QA 2C12A 4L38A 4W9UA 3D9DA 2JBSA 5K3HA 3EONA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WS9 A;  3BNF A;  3LG1 A;  2D29 A;  1T9G A;  2UXW A;  2RF7 A;  4WJY A;  2YYG A;  3FCJ A;  2J7A A;  3BNG A;  1OAH A;  3OWM A;  1RX0 A;  3OIB A;  3GNC A;  2PG0 A;  2YYM A;  4IRN A;  4L3Y A;  4N5F A;  1R2J A;  2ZO5 A;  2IX6 A;  4M9A A;  2VIG A;  3S7W A;  5K3I A;  4DOY A;  1BUC A;  1FS7 A;  4Q4U A;  3SCE A;  4XVX A;  2JBT A;  4ZYJ A;  1EGE A;  1QDB A;  1W07 A;  2WBI A;  3RKH A;  3D9G A;  3PFD A;  3B96 A;  4HR3 A;  1SIQ A;  4JEK A;  4Q0T A;  1IS2 A;  3BNJ A;  3P4T A;  3EOM A;  5K3G A;  2YYL A;  2DVL A;  2R0N A;  3II9 A;  3MXL A;  3FO3 A;  1EGD A;  3LGQ A;  2E81 A;  3UBR A;  2C0U A;  4OO2 A;  1GU6 A;  4RM7 A;  3MDD A;  2E80 A;  4U83 A;  3MDE A;  3L1T A;  4NXL A;  3D9F A;  2IX5 A;  2EBA A;  4L3Z A;  4Q5C A;  4IV6 A;  1UDY A;  2REH A;  1UKW A;  2DDH A;  4Q1O A;  3MPI A;  3NF4 A;  4ZXV A;  4Q5B A;  2ZAF A;  4P13 A;  3BNH A;  3X0Y A;  3SWO A;  2RDZ A;  2R0M A;  2RFQ A;  3M9V A;  3UU9 A;  3MKH A;  3AFF A;  3SF6 A;  2OT4 A;  2JBR A;  2OR0 A;  4O5M A;  3F29 A;  4X28 C;  4KCF A;  2FON A;  3D1I A;  2YYK A;  3TOR A;  3GQT A;  3D9E A;  2VR0 A;  2A1T A;  1SIR A;  1FS9 A;  5K3J A;  2YYI A;  3SXQ A;  3TTB A;  2JIF A;  1JQI A;  3GM6 A;  4X28 A;  4Q17 A;  3X0X A;  1IVH A;  3OWA A;  1U8V A;  1EGC A;  4L1F A;  3HWC A;  1FS8 A;  3MPJ A;  4L3X A;  3AFE A;  3R7K A;  2YYJ A;  3D6B A;  4KTO A;  3MMO A;  4G5E A;  2CX9 A;  2Z1Q A;  2C12 A;  4L38 A;  4W9U A;  3D9D A;  2JBS A;  5K3H A;  3EON A; 
#chains in the Genus database with same CATH topology
 1WS9 A;  3BNF A;  3LG1 A;  2ZDX A;  1GJV A;  1XG2 B;  1Y8O A;  2D29 A;  1T9G A;  2UXW A;  2RF7 A;  4WJY A;  2YYG A;  1S26 A;  4P79 A;  3TZ4 A;  4E01 A;  3FCJ A;  2J7A A;  3BNG A;  1OAH A;  3OWM A;  1RX0 A;  3OIB A;  2PNR A;  3GNC A;  2PG0 A;  1PK0 A;  2OJQ A;  4IRN A;  2YYM A;  2EBH X;  4N5F A;  1R2J A;  2PO4 A;  4H85 A;  4L3Y A;  1GKX A;  4FF3 A;  2ZO5 A;  1X90 A;  2IX6 A;  4M9A A;  2BU5 A;  2VIG A;  4H81 A;  4MPC A;  2CJ4 A;  5B5V A;  3X29 A;  3C46 A;  3S7W A;  5K3I A;  3CE2 A;  5J71 A;  4DOY A;  5M4P A;  1BUC A;  2BU6 A;  1FS7 A;  4Q4U A;  3SCE A;  4XVX A;  4AKI A;  2JBT A;  4ZYJ A;  1EGE A;  4MP2 A;  3C3L A;  4QIC A;  4DZY A;  3U33 A;  1QDB A;  1W07 A;  5B6B A;  2WBI A;  1RJ1 A;  3RKH A;  3D9G A;  3PFD A;  3B96 A;  2CJ8 A;  2GBB A;  5J6A A;  3KML A;  4HR3 A;  1SIQ A;  5GJV E;  4JEK A;  4Q0T A;  1IS2 A;  3BNJ A;  2OEV A;  4F0X A;  3P4T A;  1X91 A;  1Y0V A;  2Q8F A;  1GKZ A;  4E00 A;  5M4M A;  3EOM A;  5K3G A;  2XS8 A;  1RJ4 A;  4FZ4 A;  2YYL A;  2DVL A;  2R0N A;  3II9 A;  3MXL A;  1Y8P A;  1EGD A;  2FP1 A;  2R05 A;  3FO3 A;  3LGQ A;  2XS1 A;  4H7Q A;  5BRM A;  2E81 A;  3UBR A;  3VAD A;  2AZE A;  4J1V A;  2C0U A;  4OO2 A;  1GU6 A;  1XFZ A;  5BRK A;  4RM7 A;  4V25 A;  3MDD A;  2VF1 A;  1K90 A;  2E80 A;  4U83 A;  3MDE A;  3L1T A;  4NXL A;  3D9F A;  3VKH A;  2IX5 A;  2EBA A;  2FP2 A;  4L3Z A;  4Q5C A;  4IV6 A;  1UDY A;  2REH A;  1UKW A;  1SK6 A;  5GJW E;  2DDH A;  2CJ6 A;  3Q22 A;  5M4K A;  2ZKJ A;  4FF2 A;  4FF1 A;  4Q1O A;  3MPI A;  3NF4 A;  3TZ0 A;  2Q8G A;  4ZXV A;  4Q5B A;  2ZAF A;  4P13 A;  1RP3 A;  2QR4 A;  4KSF A;  4JIO A;  3BNH A;  5B5W A;  2BU7 A;  2F6L A;  3X0Y A;  3SWO A;  2RDZ A;  2R0M A;  4MP7 A;  2RFQ A;  3M9V A;  3UU9 A;  2BU2 A;  3CRL A;  3MKH A;  3AFF A;  3SF6 A;  2OT4 A;  2LFW A;  2YGW A;  4HKS A;  2JBR A;  2R02 A;  4MPN A;  3TZ2 A;  2ZDY A;  2AO2 A;  2OR0 A;  4O5M A;  1PI1 A;  3D2R A;  4X28 C;  4KCF A;  3F29 A;  3TZ5 A;  2BTZ A;  2FON A;  3D1I A;  2YYK A;  3CRK A;  2Q8H A;  3GQT A;  3TOR A;  3D9E A;  1X8Z A;  2VR0 A;  4G97 A;  2EC5 A;  2A1T A;  3N0R A;  1SIR A;  1FS9 A;  5K3J A;  2YYI A;  4JIZ A;  3SXQ A;  3TTB A;  5EZ3 A;  2JIF A;  2BU8 A;  4LQS B;  1JQI A;  1R3B A;  4AI6 A;  3Q0A A;  1Y8N A;  4X28 A;  3GM6 A;  2OEX A;  4Q17 A;  2Q8I A;  3X0X A;  1IVH A;  3OWA A;  1U8V A;  3Q24 A;  1EGC A;  4L1F A;  3HWC A;  1XFU A;  1FS8 A;  2XQR B;  3MPJ A;  4L3X A;  3AFE A;  3R7K A;  2YYJ A;  4V26 A;  3D6B A;  2R03 A;  4KTO A;  5M4N A;  2CJ7 A;  3MMO A;  4G5E A;  4HKR A;  4LQQ B;  2EBF X;  1SC5 A;  4AKH A;  1XFX A;  1XFV A;  1K93 A;  2CX9 A;  4KS9 A;  3VKG A;  1LVC A;  3Q23 A;  2Z1Q A;  2E0A A;  2C12 A;  2HJN A;  4FF4 A;  2CJ5 A;  4MPE A;  4L38 A;  4E02 A;  1JM6 A;  1XFY A;  4W9U A;  3D9D A;  1XFW A;  4KSA A;  4AKG A;  2JBS A;  5K3H A;  3C2P A;  3EON A;  3DJL A;  1K8T A; 
#chains in the Genus database with same CATH homology
 1WS9 A;  3BNF A;  3LG1 A;  2D29 A;  1T9G A;  2UXW A;  2RF7 A;  4WJY A;  2YYG A;  3FCJ A;  2J7A A;  3BNG A;  1OAH A;  3OWM A;  1RX0 A;  3OIB A;  3GNC A;  2PG0 A;  2YYM A;  4IRN A;  4L3Y A;  4N5F A;  1R2J A;  2ZO5 A;  2IX6 A;  4M9A A;  2VIG A;  3S7W A;  5K3I A;  4DOY A;  1BUC A;  1FS7 A;  4Q4U A;  3SCE A;  4XVX A;  2JBT A;  4ZYJ A;  1EGE A;  1QDB A;  1W07 A;  2WBI A;  3RKH A;  3D9G A;  3PFD A;  3B96 A;  4HR3 A;  1SIQ A;  4JEK A;  4Q0T A;  1IS2 A;  3BNJ A;  3P4T A;  3EOM A;  5K3G A;  2YYL A;  2DVL A;  2R0N A;  3II9 A;  3MXL A;  3FO3 A;  1EGD A;  3LGQ A;  2E81 A;  3UBR A;  2C0U A;  4OO2 A;  1GU6 A;  4RM7 A;  3MDD A;  2E80 A;  4U83 A;  3MDE A;  3L1T A;  4NXL A;  3D9F A;  2IX5 A;  2EBA A;  4L3Z A;  4Q5C A;  4IV6 A;  1UDY A;  2REH A;  1UKW A;  2DDH A;  4Q1O A;  3MPI A;  3NF4 A;  4ZXV A;  4Q5B A;  2ZAF A;  4P13 A;  3BNH A;  3X0Y A;  3SWO A;  2RDZ A;  2R0M A;  2RFQ A;  3M9V A;  3UU9 A;  3MKH A;  3AFF A;  3SF6 A;  2OT4 A;  2JBR A;  2OR0 A;  4O5M A;  3F29 A;  4X28 C;  4KCF A;  2FON A;  3D1I A;  2YYK A;  3TOR A;  3GQT A;  3D9E A;  2VR0 A;  2A1T A;  1SIR A;  1FS9 A;  5K3J A;  2YYI A;  3SXQ A;  3TTB A;  2JIF A;  1JQI A;  3GM6 A;  4X28 A;  4Q17 A;  3X0X A;  1IVH A;  3OWA A;  1U8V A;  1EGC A;  4L1F A;  3HWC A;  1FS8 A;  3MPJ A;  4L3X A;  3AFE A;  3R7K A;  2YYJ A;  3D6B A;  4KTO A;  3MMO A;  4G5E A;  2CX9 A;  2Z1Q A;  2C12 A;  4L38 A;  4W9U A;  3D9D A;  2JBS A;  5K3H A;  3EON A; 
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similar chains in the Genus database (?% sequence similarity)
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