1DTJA

Crystal structure of nova-2 kh3 k-homology rna-binding domain
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
74
structure length
74
Chain Sequence
MKELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Immune system
molecule keywords RNA-BINDING NEUROONCOLOGICAL VENTRAL ANTIGEN 2
publication title Crystal structures of Nova-1 and Nova-2 K-homology RNA-binding domains.
pubmed doi rcsb
source organism Homo sapiens
total genus 17
structure length 74
sequence length 74
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2000-01-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00013 KH_1 KH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 1dtjA00
4B8TA 3VKEA 3V69A 4WANA 4JVHA 2ANNA 2YQRA 1X4NA 4JVYA 2AXYA 1VIGA 4WALA 3AEVB 4IFDG 2CTEA 2CPQA 1X4MA 1DT4A 4QMFB 4AM3A 1ZZIA 1ZTGA 2OPUA 5C0XG 2CTMA 2JVZA 2ANRA 1J5KA 5K36G 2JA9A 2PY9A 2CTLA 1K1GA 4BA2I 1ZZKA 2HH3A 1DTJA 1WE8A 2JEAI 2Z0SA 1VIHA 1TUAA 2OPVA 3U1KA 5JEAG 2BL5A 2QNDA 2E3UA 2JEBI 2CTFA 2NN6G 4AIMA 2HH2A 1ZZJA 1KHMA 3L7ZC 1J4WA 1WVNA 2CTJA 2JE6I 4OO1G 1EC6A 2MJHA 4LIJA 4NBQA 4BA1I 2P2RA 2DGRA 2BA0A 2CTKA 2PQUA 2FMRA 2JZXA
chains in the Genus database with same CATH superfamily
3OTOH 4WANA 2Y3MA 4DR7H 4OX9H 4DR2H 3FAUA 1X4NA 1NXUA 4NZTM 2CWFA 4B8CD 4X65H 5LMNH 1IBKH 4JI1H 4KHPH 2CPQA 3T1HH 1I6UA 4QMFB 1XNQH 1V9NA 4AM3A 2UUBH 4AQYH 2OPUA 4JV5H 4B3MH 1SEIA 4H8AA 4JYAH 2M6QA 1AN7A 2VKCA 5DT9A 2CTLA 2VQFH 1PQXA 3OETA 1HNWH 1ZZKA 4JI4H 1DTJA 3KDKA 4DR5H 2JEAI 4YHHH 4X64H 2UXCH 2OPVA 4JI8H 2ZM6H 1N32H 1N36H 4LF9H 4EC5A 4LF7H 1WVNA 2MJHA 4LIJA 1FKAH 1I94H 2LRRA 2P2RA 2BA0A 1MSZA 2LTLA 3GR5A 1UG8A 4DUYH 4B3TH 4PDBA 4YY3H 1VBIA 4OCHA 1XMQH 4JVYA 4DR6H 1VIGA 4WALA 1X4MA 2E5LH 1ZZIA 3QD7X 2CTMA 2JVZA 3RF2A 1F0XA 2FFMA 2HH3A 1WE8A 2Z0SA 2CWHA 1TUAA 3U1KA 4DV2H 1HNZH 1X9ZA 1S03G 2QNDA 4GKKH 2NN6G 2HH2A 2UUCH 2CTJA 2UU9H 1S20A 4DV5H 2X06A 4JI6H 4FJUA 5LMUH 4LF4H 4DR3H 4LF8H 4JI5H 2CTKA 4JI7H 2PQUA 4DR4H 2K1HA 4K0KH 3VKEA 3V69A 5FLXW 3UOEA 1Z2IA 2YQRA 1HR0H 2F4VH 1WTJA 4JI3H 3GABA 2AXYA 3J7AK 3AEVB 4DUZH 2G8YA 1N34H 4JI0H 2CTEA 1XRHA 1DT4A 2UXBH 2FPHX 5C0XG 1V8CA 4NZRM 1HNXH 4GKJH 4OD6A 2PY9A 2PT7G 5K36G 4DV7H 2ZQEA 4DV3H 4B3SH 4NXMH 1VIHA 2CPMA 5JEAG 4NXNH 2O4CA 2CTFA 1ZZJA 4G08A 3L7ZC 1J4WA 2HHHH 5IT9W 1EC6A 4NBQA 4BA1I 4LFCH 4LF5H 4JI2H 4DR1H 2LTMA 3JAMW 2VQEH 3GKUA 4DV6H 4B8TA 4JVHA 2ANNA 1IBLH 3NCVA 4DV4H 4IFDG 5BR8H 4LF6H 4LFAH 1ZTGA 5LL6b 2LF0A 4FJSA 3J81W 2ANRA 4X66H 1J5KA 1J5EH 2JA9A 4DV1H 4LFBH 1K1GA 4BA2I 4X62H 2M8WA 1XNRH 1XMOH 4B3RH 2BL5A 1N33H 3SB1A 1FJGH 2E3UA 2A1SA 2JEBI 3KDGA 4AIMA 1ODHA 2UXDH 1KHMA 1IBMH 4DV0H 4OO1G 2JE6I 2UUAH 3I0PA 4E9JA 5A2QW 5IWAH 1WHRA 3J80W 3EZJA 2DGRA 3OSSD 3T1YH 1X0AA 2D9IA 2FMRA 2JZXA
chains in the Genus database with same CATH topology
4B8TA 3VKEA 3V69A 4WANA 4JVHA 2ANNA 2YQRA 1X4NA 4JVYA 2AXYA 1VIGA 4WALA 3AEVB 4IFDG 2CTEA 2CPQA 1X4MA 1DT4A 4QMFB 4AM3A 1ZZIA 1ZTGA 2OPUA 5C0XG 2CTMA 2JVZA 2ANRA 1J5KA 5K36G 2JA9A 2PY9A 2CTLA 1K1GA 4BA2I 1ZZKA 2HH3A 1DTJA 1WE8A 2JEAI 2Z0SA 1VIHA 1TUAA 2OPVA 3U1KA 5JEAG 2BL5A 2QNDA 2E3UA 2JEBI 2CTFA 2NN6G 4AIMA 2HH2A 1ZZJA 1KHMA 3L7ZC 1J4WA 1WVNA 2CTJA 2JE6I 4OO1G 1EC6A 2MJHA 4LIJA 4NBQA 4BA1I 2P2RA 2DGRA 2BA0A 2CTKA 2PQUA 2FMRA 2JZXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4B8T A;  3VKE A;  3V69 A;  4WAN A;  4JVH A;  2ANN A;  2YQR A;  1X4N A;  4JVY A;  2AXY A;  1VIG A;  4WAL A;  3AEV B;  4IFD G;  2CTE A;  2CPQ A;  1X4M A;  1DT4 A;  4QMF B;  4AM3 A;  1ZZI A;  1ZTG A;  2OPU A;  5C0X G;  2CTM A;  2JVZ A;  2ANR A;  1J5K A;  5K36 G;  2JA9 A;  2PY9 A;  2CTL A;  1K1G A;  4BA2 I;  1ZZK A;  2HH3 A;  1DTJ A;  1WE8 A;  2JEA I;  2Z0S A;  1VIH A;  1TUA A;  2OPV A;  3U1K A;  5JEA G;  2BL5 A;  2QND A;  2E3U A;  2JEB I;  2CTF A;  2NN6 G;  4AIM A;  2HH2 A;  1ZZJ A;  1KHM A;  3L7Z C;  1J4W A;  1WVN A;  2CTJ A;  2JE6 I;  4OO1 G;  1EC6 A;  2MJH A;  4LIJ A;  4NBQ A;  4BA1 I;  2P2R A;  2DGR A;  2BA0 A;  2CTK A;  2PQU A;  2FMR A;  2JZX A; 
#chains in the Genus database with same CATH topology
 3OTO H;  4WAN A;  2Y3M A;  4DR7 H;  4OX9 H;  4DR2 H;  3FAU A;  1X4N A;  1NXU A;  4NZT M;  2CWF A;  4B8C D;  4X65 H;  5LMN H;  1IBK H;  4JI1 H;  4KHP H;  2CPQ A;  3T1H H;  1I6U A;  4QMF B;  1XNQ H;  1V9N A;  4AM3 A;  2UUB H;  4AQY H;  2OPU A;  4JV5 H;  4B3M H;  1SEI A;  4H8A A;  4JYA H;  2M6Q A;  1AN7 A;  2VKC A;  5DT9 A;  2CTL A;  2VQF H;  1PQX A;  3OET A;  1HNW H;  1ZZK A;  4JI4 H;  1DTJ A;  3KDK A;  4DR5 H;  2JEA I;  4YHH H;  4X64 H;  2UXC H;  2OPV A;  4JI8 H;  2ZM6 H;  1N32 H;  1N36 H;  4LF9 H;  4EC5 A;  4LF7 H;  1WVN A;  2MJH A;  4LIJ A;  1FKA H;  1I94 H;  2LRR A;  2P2R A;  2BA0 A;  1MSZ A;  2LTL A;  3GR5 A;  1UG8 A;  4DUY H;  4B3T H;  4PDB A;  4YY3 H;  1VBI A;  4OCH A;  1XMQ H;  4JVY A;  4DR6 H;  1VIG A;  4WAL A;  1X4M A;  2E5L H;  1ZZI A;  3QD7 X;  2CTM A;  2JVZ A;  3RF2 A;  1F0X A;  2FFM A;  2HH3 A;  1WE8 A;  2Z0S A;  2CWH A;  1TUA A;  3U1K A;  4DV2 H;  1HNZ H;  1X9Z A;  1S03 G;  2QND A;  4GKK H;  2NN6 G;  2HH2 A;  2UUC H;  2CTJ A;  2UU9 H;  1S20 A;  4DV5 H;  2X06 A;  4JI6 H;  4FJU A;  5LMU H;  4LF4 H;  4DR3 H;  4LF8 H;  4JI5 H;  2CTK A;  4JI7 H;  2PQU A;  4DR4 H;  2K1H A;  4K0K H;  3VKE A;  3V69 A;  5FLX W;  3UOE A;  1Z2I A;  2YQR A;  1HR0 H;  2F4V H;  1WTJ A;  4JI3 H;  3GAB A;  2AXY A;  3J7A K;  3AEV B;  4DUZ H;  2G8Y A;  1N34 H;  4JI0 H;  2CTE A;  1XRH A;  1DT4 A;  2UXB H;  2FPH X;  5C0X G;  1V8C A;  4NZR M;  1HNX H;  4GKJ H;  4OD6 A;  2PY9 A;  2PT7 G;  5K36 G;  4DV7 H;  2ZQE A;  4DV3 H;  4B3S H;  4NXM H;  1VIH A;  2CPM A;  5JEA G;  4NXN H;  2O4C A;  2CTF A;  1ZZJ A;  4G08 A;  3L7Z C;  1J4W A;  2HHH H;  5IT9 W;  1EC6 A;  4NBQ A;  4BA1 I;  4LFC H;  4LF5 H;  4JI2 H;  4DR1 H;  2LTM A;  3JAM W;  2VQE H;  3GKU A;  4DV6 H;  4B8T A;  4JVH A;  2ANN A;  1IBL H;  3NCV A;  4DV4 H;  4IFD G;  5BR8 H;  4LF6 H;  4LFA H;  1ZTG A;  5LL6 b;  2LF0 A;  4FJS A;  3J81 W;  2ANR A;  4X66 H;  1J5K A;  1J5E H;  2JA9 A;  4DV1 H;  4LFB H;  1K1G A;  4BA2 I;  4X62 H;  2M8W A;  1XNR H;  1XMO H;  4B3R H;  2BL5 A;  1N33 H;  3SB1 A;  1FJG H;  2E3U A;  2A1S A;  2JEB I;  3KDG A;  4AIM A;  1ODH A;  2UXD H;  1KHM A;  1IBM H;  4DV0 H;  4OO1 G;  2JE6 I;  2UUA H;  3I0P A;  4E9J A;  5A2Q W;  5IWA H;  1WHR A;  3J80 W;  3EZJ A;  2DGR A;  3OSS D;  3T1Y H;  1X0A A;  2D9I A;  2FMR A;  2JZX A; 
#chains in the Genus database with same CATH homology
 4B8T A;  3VKE A;  3V69 A;  4WAN A;  4JVH A;  2ANN A;  2YQR A;  1X4N A;  4JVY A;  2AXY A;  1VIG A;  4WAL A;  3AEV B;  4IFD G;  2CTE A;  2CPQ A;  1X4M A;  1DT4 A;  4QMF B;  4AM3 A;  1ZZI A;  1ZTG A;  2OPU A;  5C0X G;  2CTM A;  2JVZ A;  2ANR A;  1J5K A;  5K36 G;  2JA9 A;  2PY9 A;  2CTL A;  1K1G A;  4BA2 I;  1ZZK A;  2HH3 A;  1DTJ A;  1WE8 A;  2JEA I;  2Z0S A;  1VIH A;  1TUA A;  2OPV A;  3U1K A;  5JEA G;  2BL5 A;  2QND A;  2E3U A;  2JEB I;  2CTF A;  2NN6 G;  4AIM A;  2HH2 A;  1ZZJ A;  1KHM A;  3L7Z C;  1J4W A;  1WVN A;  2CTJ A;  2JE6 I;  4OO1 G;  1EC6 A;  2MJH A;  4LIJ A;  4NBQ A;  4BA1 I;  2P2R A;  2DGR A;  2BA0 A;  2CTK A;  2PQU A;  2FMR A;  2JZX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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