1ZZKA

Crystal structure of the third kh domain of hnrnp k at 0.95a resolution
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
80
structure length
80
Chain Sequence
b'MGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYSGKFF'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title X-Ray Crystallographic and NMR Studies of the Third KH Domain of hnRNP K in Complex with Single-Stranded Nucleic Acids
pubmed doi rcsb
molecule keywords Heterogeneous nuclear ribonucleoprotein K
source organism Homo sapiens
molecule tags Dna binding protein
total genus 26
structure length 80
sequence length 80
ec nomenclature
pdb deposition date 2005-06-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00013 KH_1 KH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 1zzkA00
2QNDA 1TUAA 5C0XG 4IFDG 4NBQA 2YQRA 1DT4A 4BA2I 1J4WA 1EC6A 4BA1I 1ZTGA 2CTLA 1X4NA 1VIGA 2CTJA 2JE6I 4LIJA 3VKEA 1K1GA 4B8TA 2CPQA 2CTKA 4QMFB 2P2RA 2HH2A 2NN6G 4AIMA 4JVYA 4WANA 2CTMA 4OO1G 2Z0SA 2BA0A 2OPUA 4JVHA 2JEBI 2OPVA 2JZXA 3L7ZC 2JEAI 2FMRA 2HH3A 2ANRA 1WVNA 2CTFA 1J5KA 2ANNA 4WALA 1X4MA 1DTJA 5JEAG 2BL5A 3V69A 2AXYA 2MJHA 2PY9A 2CTEA 1ZZKA 2DGRA 1ZZIA 2PQUA 5K36G 2E3UA 1ZZJA 3U1KA 4AM3A 3AEVB 1KHMA 2JVZA 1VIHA 1WE8A 2JA9A
chains in the Genus database with same CATH superfamily
2ZM6H 2VQFH 5FLXW 4JI5H 5IWAH 4JI6H 1EC6A 1IBLH 1ZTGA 3NCVA 4LIJA 1VIGA 3VKEA 4JI7H 4JI1H 4DR2H 4QMFB 2HH2A 1VBIA 4AIMA 1FKAH 4WANA 4OO1G 4JYAH 4DV2H 1HR0H 2LRRA 2FMRA 1WVNA 3I0PA 5JEAG 2CPMA 2Y3MA 2FFMA 4K0KH 1X0AA 3KDGA 2UXDH 3AEVB 4DR1H 1HNWH 2JE6I 1VIHA 2UUAH 2VKCA 1TUAA 3FAUA 4DUZH 4E9JA 1DT4A 4BA2I 3OETA 5A2QW 1S20A 2K1HA 4B8CD 1X4NA 1N36H 2CWHA 2X06A 1Z2IA 4GKKH 5DT9A 4GKJH 4OX9H 4JV5H 1V8CA 1HNZH 4LF5H 2UXCH 2OPUA 4X66H 4DR3H 3GR5A 1IBKH 1NXUA 4EC5A 4DV0H 4DV7H 2JEAI 3J81W 1I94H 1HNXH 1XNRH 2HH3A 4DV3H 2M8WA 2ANNA 4X62H 1X4MA 4DR5H 4X64H 1DTJA 1ODHA 4YY3H 2BL5A 4JI8H 2UUBH 4LF6H 2PY9A 2CTEA 2VQEH 4JI2H 2M6QA 4YHHH 1AN7A 3JAMW 4B3SH 1S03G 2E5LH 4LFAH 4DV1H 1J5EH 4B3TH 2UU9H 4JI0H 4AQYH 2QNDA 5C0XG 3J80W 1N34H 4G08A 4BA1I 4NXNH 3GABA 2CTLA 2CTJA 2HHHH 4LF7H 3OSSD 3T1YH 2CTKA 4DV6H 2P2RA 4LF9H 1F0XA 2F4VH 2Z0SA 2BA0A 4PDBA 2CWFA 3OTOH 2UUCH 1WHRA 2A1SA 2LTLA 4H8AA 2O4CA 2JZXA 2OPVA 3L7ZC 4NZTM 4DV4H 4NZRM 2CTFA 1V9NA 5IT9W 3GKUA 1N33H 4DR4H 1I6UA 1WTJA 1MSZA 1XRHA 2MJHA 2LTMA 1ZZIA 5K36G 4JI4H 1ZZJA 1XMOH 3EZJA 5BR8H 3QD7X 1IBMH 1SEIA 4B3RH 1KHMA 4LF4H 4KHPH 1WE8A 3SB1A 4IFDG 4NBQA 2YQRA 4NXMH 1J4WA 1XMQH 1K1GA 1XNQH 5LL6b 4OCHA 2LF0A 4B8TA 2CPQA 4FJUA 3J7AK 2NN6G 4DR6H 4JVYA 4LFBH 2CTMA 1PQXA 1X9ZA 4DV5H 2UXBH 3T1HH 4DUYH 4JVHA 2PT7G 2JEBI 2FPHX 4OD6A 2ANRA 3KDKA 1J5KA 1FJGH 4WALA 4DR7H 4X65H 1UG8A 4FJSA 3RF2A 2G8YA 3V69A 2AXYA 2D9IA 2ZQEA 5LMUH 1ZZKA 2DGRA 5LMNH 2PQUA 4JI3H 4LFCH 2E3UA 4LF8H 4B3MH 3U1KA 3UOEA 4AM3A 2JVZA 1N32H 2JA9A
chains in the Genus database with same CATH topology
2QNDA 1TUAA 5C0XG 4IFDG 4NBQA 2YQRA 1DT4A 4BA2I 1J4WA 1EC6A 4BA1I 1ZTGA 2CTLA 1X4NA 1VIGA 2CTJA 2JE6I 4LIJA 3VKEA 1K1GA 4B8TA 2CPQA 2CTKA 4QMFB 2P2RA 2HH2A 2NN6G 4AIMA 4JVYA 4WANA 2CTMA 4OO1G 2Z0SA 2BA0A 2OPUA 4JVHA 2JEBI 2OPVA 2JZXA 3L7ZC 2JEAI 2FMRA 2HH3A 2ANRA 1WVNA 2CTFA 1J5KA 2ANNA 4WALA 1X4MA 1DTJA 5JEAG 2BL5A 3V69A 2AXYA 2MJHA 2PY9A 2CTEA 1ZZKA 2DGRA 1ZZIA 2PQUA 5K36G 2E3UA 1ZZJA 3U1KA 4AM3A 3AEVB 1KHMA 2JVZA 1VIHA 1WE8A 2JA9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QND A;  1TUA A;  5C0X G;  4IFD G;  4NBQ A;  2YQR A;  1DT4 A;  4BA2 I;  1J4W A;  1EC6 A;  4BA1 I;  1ZTG A;  2CTL A;  1X4N A;  1VIG A;  2CTJ A;  2JE6 I;  4LIJ A;  3VKE A;  1K1G A;  4B8T A;  2CPQ A;  2CTK A;  4QMF B;  2P2R A;  2HH2 A;  2NN6 G;  4AIM A;  4JVY A;  4WAN A;  2CTM A;  4OO1 G;  2Z0S A;  2BA0 A;  2OPU A;  4JVH A;  2JEB I;  2OPV A;  2JZX A;  3L7Z C;  2JEA I;  2FMR A;  2HH3 A;  2ANR A;  1WVN A;  2CTF A;  1J5K A;  2ANN A;  4WAL A;  1X4M A;  1DTJ A;  5JEA G;  2BL5 A;  3V69 A;  2AXY A;  2MJH A;  2PY9 A;  2CTE A;  1ZZK A;  2DGR A;  1ZZI A;  2PQU A;  5K36 G;  2E3U A;  1ZZJ A;  3U1K A;  4AM3 A;  3AEV B;  1KHM A;  2JVZ A;  1VIH A;  1WE8 A;  2JA9 A; 
#chains in the Genus database with same CATH topology
 2ZM6 H;  2VQF H;  5FLX W;  4JI5 H;  5IWA H;  4JI6 H;  1EC6 A;  1IBL H;  1ZTG A;  3NCV A;  4LIJ A;  1VIG A;  3VKE A;  4JI7 H;  4JI1 H;  4DR2 H;  4QMF B;  2HH2 A;  1VBI A;  4AIM A;  1FKA H;  4WAN A;  4OO1 G;  4JYA H;  4DV2 H;  1HR0 H;  2LRR A;  2FMR A;  1WVN A;  3I0P A;  5JEA G;  2CPM A;  2Y3M A;  2FFM A;  4K0K H;  1X0A A;  3KDG A;  2UXD H;  3AEV B;  4DR1 H;  1HNW H;  2JE6 I;  1VIH A;  2UUA H;  2VKC A;  1TUA A;  3FAU A;  4DUZ H;  4E9J A;  1DT4 A;  4BA2 I;  3OET A;  5A2Q W;  1S20 A;  2K1H A;  4B8C D;  1X4N A;  1N36 H;  2CWH A;  2X06 A;  1Z2I A;  4GKK H;  5DT9 A;  4GKJ H;  4OX9 H;  4JV5 H;  1V8C A;  1HNZ H;  4LF5 H;  2UXC H;  2OPU A;  4X66 H;  4DR3 H;  3GR5 A;  1IBK H;  1NXU A;  4EC5 A;  4DV0 H;  4DV7 H;  2JEA I;  3J81 W;  1I94 H;  1HNX H;  1XNR H;  2HH3 A;  4DV3 H;  2M8W A;  2ANN A;  4X62 H;  1X4M A;  4DR5 H;  4X64 H;  1DTJ A;  1ODH A;  4YY3 H;  2BL5 A;  4JI8 H;  2UUB H;  4LF6 H;  2PY9 A;  2CTE A;  2VQE H;  4JI2 H;  2M6Q A;  4YHH H;  1AN7 A;  3JAM W;  4B3S H;  1S03 G;  2E5L H;  4LFA H;  4DV1 H;  1J5E H;  4B3T H;  2UU9 H;  4JI0 H;  4AQY H;  2QND A;  5C0X G;  3J80 W;  1N34 H;  4G08 A;  4BA1 I;  4NXN H;  3GAB A;  2CTL A;  2CTJ A;  2HHH H;  4LF7 H;  3OSS D;  3T1Y H;  2CTK A;  4DV6 H;  2P2R A;  4LF9 H;  1F0X A;  2F4V H;  2Z0S A;  2BA0 A;  4PDB A;  2CWF A;  3OTO H;  2UUC H;  1WHR A;  2A1S A;  2LTL A;  4H8A A;  2O4C A;  2JZX A;  2OPV A;  3L7Z C;  4NZT M;  4DV4 H;  4NZR M;  2CTF A;  1V9N A;  5IT9 W;  3GKU A;  1N33 H;  4DR4 H;  1I6U A;  1WTJ A;  1MSZ A;  1XRH A;  2MJH A;  2LTM A;  1ZZI A;  5K36 G;  4JI4 H;  1ZZJ A;  1XMO H;  3EZJ A;  5BR8 H;  3QD7 X;  1IBM H;  1SEI A;  4B3R H;  1KHM A;  4LF4 H;  4KHP H;  1WE8 A;  3SB1 A;  4IFD G;  4NBQ A;  2YQR A;  4NXM H;  1J4W A;  1XMQ H;  1K1G A;  1XNQ H;  5LL6 b;  4OCH A;  2LF0 A;  4B8T A;  2CPQ A;  4FJU A;  3J7A K;  2NN6 G;  4DR6 H;  4JVY A;  4LFB H;  2CTM A;  1PQX A;  1X9Z A;  4DV5 H;  2UXB H;  3T1H H;  4DUY H;  4JVH A;  2PT7 G;  2JEB I;  2FPH X;  4OD6 A;  2ANR A;  3KDK A;  1J5K A;  1FJG H;  4WAL A;  4DR7 H;  4X65 H;  1UG8 A;  4FJS A;  3RF2 A;  2G8Y A;  3V69 A;  2AXY A;  2D9I A;  2ZQE A;  5LMU H;  1ZZK A;  2DGR A;  5LMN H;  2PQU A;  4JI3 H;  4LFC H;  2E3U A;  4LF8 H;  4B3M H;  3U1K A;  3UOE A;  4AM3 A;  2JVZ A;  1N32 H;  2JA9 A; 
#chains in the Genus database with same CATH homology
 2QND A;  1TUA A;  5C0X G;  4IFD G;  4NBQ A;  2YQR A;  1DT4 A;  4BA2 I;  1J4W A;  1EC6 A;  4BA1 I;  1ZTG A;  2CTL A;  1X4N A;  1VIG A;  2CTJ A;  2JE6 I;  4LIJ A;  3VKE A;  1K1G A;  4B8T A;  2CPQ A;  2CTK A;  4QMF B;  2P2R A;  2HH2 A;  2NN6 G;  4AIM A;  4JVY A;  4WAN A;  2CTM A;  4OO1 G;  2Z0S A;  2BA0 A;  2OPU A;  4JVH A;  2JEB I;  2OPV A;  2JZX A;  3L7Z C;  2JEA I;  2FMR A;  2HH3 A;  2ANR A;  1WVN A;  2CTF A;  1J5K A;  2ANN A;  4WAL A;  1X4M A;  1DTJ A;  5JEA G;  2BL5 A;  3V69 A;  2AXY A;  2MJH A;  2PY9 A;  2CTE A;  1ZZK A;  2DGR A;  1ZZI A;  2PQU A;  5K36 G;  2E3U A;  1ZZJ A;  3U1K A;  4AM3 A;  3AEV B;  1KHM A;  2JVZ A;  1VIH A;  1WE8 A;  2JA9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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