1ZZKA

Crystal structure of the third kh domain of hnrnp k at 0.95a resolution
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
80
structure length
80
Chain Sequence
MGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYSGKFF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dna binding protein
source organism Homo sapiens
publication title X-Ray Crystallographic and NMR Studies of the Third KH Domain of hnRNP K in Complex with Single-Stranded Nucleic Acids
pubmed doi rcsb
molecule keywords Heterogeneous nuclear ribonucleoprotein K
total genus 26
structure length 80
sequence length 80
ec nomenclature
pdb deposition date 2005-06-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00013 KH_1 KH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 1zzkA00
2NN6G 2DGRA 1X4MA 2JEBI 2HH2A 2ANNA 3AEVB 3VKEA 2OPUA 1J4WA 4OO1G 2JA9A 2OPVA 2CPQA 2AXYA 4AIMA 3L7ZC 3V69A 4WANA 2QNDA 1ZTGA 4AM3A 2PY9A 2YQRA 1ZZKA 4BA2I 2CTLA 3U1KA 1VIHA 2JE6I 2E3UA 2JZXA 2CTEA 1DT4A 4JVYA 1EC6A 2CTMA 1WE8A 2BA0A 4WALA 1K1GA 1X4NA 1ZZIA 1DTJA 2BL5A 4IFDG 2CTJA 4BA1I 4B8TA 5C0XG 4JVHA 5JEAG 2FMRA 1ZZJA 2PQUA 2CTKA 5K36G 4QMFB 2ANRA 1KHMA 2JEAI 4NBQA 1VIGA 2JVZA 1TUAA 4LIJA 1J5KA 2P2RA 2HH3A 2Z0SA 2CTFA 2MJHA 1WVNA
chains in the Genus database with same CATH superfamily
2NN6G 2UUCH 1X4MA 2JEBI 2HH2A 2O4CA 4FJSA 2M8WA 5BR8H 3VKEA 3FAUA 1S20A 2CPQA 2A1SA 4NZRM 2D9IA 2ZM6H 4JYAH 4DV3H 3V69A 1X9ZA 1Z2IA 3J7AK 4DR5H 2G8YA 1ZZKA 4NXMH 2CTLA 5FLXW 4DV5H 1VIHA 4DR6H 2E3UA 1IBKH 4E9JA 4WALA 4AQYH 1K1GA 1XMOH 1XNQH 1X0AA 2HHHH 5DT9A 4OCHA 2K1HA 4DR2H 2CPMA 4JI6H 2ZQEA 1ZZJA 2PQUA 2CWHA 4OX9H 2JEAI 4LF4H 3OETA 2LTMA 2Z0SA 5LMNH 1HNWH 4H8AA 2VQFH 1F0XA 3KDKA 5IWAH 2ANNA 2OPUA 1J4WA 2OPVA 3J80W 2E5LH 4DR3H 4LFCH 3KDGA 1NXUA 4DUYH 1V9NA 4NXNH 1V8CA 4BA2I 4LF7H 2JE6I 4X66H 4JVYA 1HNXH 4LFAH 4LF9H 2BA0A 4DV7H 1X4NA 3GABA 3T1HH 2X06A 3RF2A 3OTOH 2CWFA 1N33H 4BA1I 5C0XG 1ODHA 4JI0H 5JEAG 1IBMH 2CTKA 1WTJA 2ANRA 4LFBH 5K36G 1KHMA 4X62H 4YY3H 4DR1H 1TUAA 5LMUH 4DV0H 2UXBH 2F4VH 1J5KA 4JI8H 2LF0A 3T1YH 4OD6A 4KHPH 3AEVB 4GKJH 1MSZA 2DGRA 4NZTM 1N36H 4OO1G 2JA9A 2VQEH 4DUZH 4JI7H 1N32H 3EZJA 1S03G 1ZTGA 2LRRA 4JI5H 4LF5H 2UUAH 2PY9A 3NCVA 3JAMW 1HR0H 5IT9W 3U1KA 1UG8A 2UXCH 1AN7A 4DR7H 5A2QW 1XMQH 1J5EH 4JI3H 4EC5A 1EC6A 2UU9H 4YHHH 1ZZIA 4JI4H 1N34H 1WHRA 4B3SH 2CTJA 3OSSD 2M6QA 4LF8H 4DV6H 2FMRA 4B3TH 1VIGA 4B3RH 1SEIA 2P2RA 2HH3A 2LTLA 4B3MH 1I94H 4K0KH 1XRHA 3QD7X 4DV4H 2AXYA 4AIMA 3L7ZC 3GKUA 2FPHX 4WANA 4DV1H 2QNDA 2PT7G 4AM3A 4FJUA 2YQRA 2UUBH 1FJGH 1PQXA 2VKCA 4X64H 4X65H 1VBIA 2UXDH 4LF6H 2FFMA 1XNRH 2JZXA 2CTEA 5LL6b 4G08A 1DT4A 2CTMA 1WE8A 4PDBA 3SB1A 4JI2H 3UOEA 4DV2H 1DTJA 2BL5A 3I0PA 1IBLH 4IFDG 4B8CD 4DR4H 4B8TA 4GKKH 1I6UA 4JVHA 4JV5H 4QMFB 3J81W 1HNZH 4NBQA 4JI1H 2JVZA 4LIJA 3GR5A 1FKAH 2Y3MA 2CTFA 2MJHA 1WVNA
chains in the Genus database with same CATH topology
2NN6G 2DGRA 1X4MA 2JEBI 2HH2A 2ANNA 3AEVB 3VKEA 2OPUA 1J4WA 4OO1G 2JA9A 2OPVA 2CPQA 2AXYA 4AIMA 3L7ZC 3V69A 4WANA 2QNDA 1ZTGA 4AM3A 2PY9A 2YQRA 1ZZKA 4BA2I 2CTLA 3U1KA 1VIHA 2JE6I 2E3UA 2JZXA 2CTEA 1DT4A 4JVYA 1EC6A 2CTMA 1WE8A 2BA0A 4WALA 1K1GA 1X4NA 1ZZIA 1DTJA 2BL5A 4IFDG 2CTJA 4BA1I 4B8TA 5C0XG 4JVHA 5JEAG 2FMRA 1ZZJA 2PQUA 2CTKA 5K36G 4QMFB 2ANRA 1KHMA 2JEAI 4NBQA 1VIGA 2JVZA 1TUAA 4LIJA 1J5KA 2P2RA 2HH3A 2Z0SA 2CTFA 2MJHA 1WVNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NN6 G;  2DGR A;  1X4M A;  2JEB I;  2HH2 A;  2ANN A;  3AEV B;  3VKE A;  2OPU A;  1J4W A;  4OO1 G;  2JA9 A;  2OPV A;  2CPQ A;  2AXY A;  4AIM A;  3L7Z C;  3V69 A;  4WAN A;  2QND A;  1ZTG A;  4AM3 A;  2PY9 A;  2YQR A;  1ZZK A;  4BA2 I;  2CTL A;  3U1K A;  1VIH A;  2JE6 I;  2E3U A;  2JZX A;  2CTE A;  1DT4 A;  4JVY A;  1EC6 A;  2CTM A;  1WE8 A;  2BA0 A;  4WAL A;  1K1G A;  1X4N A;  1ZZI A;  1DTJ A;  2BL5 A;  4IFD G;  2CTJ A;  4BA1 I;  4B8T A;  5C0X G;  4JVH A;  5JEA G;  2FMR A;  1ZZJ A;  2PQU A;  2CTK A;  5K36 G;  4QMF B;  2ANR A;  1KHM A;  2JEA I;  4NBQ A;  1VIG A;  2JVZ A;  1TUA A;  4LIJ A;  1J5K A;  2P2R A;  2HH3 A;  2Z0S A;  2CTF A;  2MJH A;  1WVN A; 
#chains in the Genus database with same CATH topology
 2NN6 G;  2UUC H;  1X4M A;  2JEB I;  2HH2 A;  2O4C A;  4FJS A;  2M8W A;  5BR8 H;  3VKE A;  3FAU A;  1S20 A;  2CPQ A;  2A1S A;  4NZR M;  2D9I A;  2ZM6 H;  4JYA H;  4DV3 H;  3V69 A;  1X9Z A;  1Z2I A;  3J7A K;  4DR5 H;  2G8Y A;  1ZZK A;  4NXM H;  2CTL A;  5FLX W;  4DV5 H;  1VIH A;  4DR6 H;  2E3U A;  1IBK H;  4E9J A;  4WAL A;  4AQY H;  1K1G A;  1XMO H;  1XNQ H;  1X0A A;  2HHH H;  5DT9 A;  4OCH A;  2K1H A;  4DR2 H;  2CPM A;  4JI6 H;  2ZQE A;  1ZZJ A;  2PQU A;  2CWH A;  4OX9 H;  2JEA I;  4LF4 H;  3OET A;  2LTM A;  2Z0S A;  5LMN H;  1HNW H;  4H8A A;  2VQF H;  1F0X A;  3KDK A;  5IWA H;  2ANN A;  2OPU A;  1J4W A;  2OPV A;  3J80 W;  2E5L H;  4DR3 H;  4LFC H;  3KDG A;  1NXU A;  4DUY H;  1V9N A;  4NXN H;  1V8C A;  4BA2 I;  4LF7 H;  2JE6 I;  4X66 H;  4JVY A;  1HNX H;  4LFA H;  4LF9 H;  2BA0 A;  4DV7 H;  1X4N A;  3GAB A;  3T1H H;  2X06 A;  3RF2 A;  3OTO H;  2CWF A;  1N33 H;  4BA1 I;  5C0X G;  1ODH A;  4JI0 H;  5JEA G;  1IBM H;  2CTK A;  1WTJ A;  2ANR A;  4LFB H;  5K36 G;  1KHM A;  4X62 H;  4YY3 H;  4DR1 H;  1TUA A;  5LMU H;  4DV0 H;  2UXB H;  2F4V H;  1J5K A;  4JI8 H;  2LF0 A;  3T1Y H;  4OD6 A;  4KHP H;  3AEV B;  4GKJ H;  1MSZ A;  2DGR A;  4NZT M;  1N36 H;  4OO1 G;  2JA9 A;  2VQE H;  4DUZ H;  4JI7 H;  1N32 H;  3EZJ A;  1S03 G;  1ZTG A;  2LRR A;  4JI5 H;  4LF5 H;  2UUA H;  2PY9 A;  3NCV A;  3JAM W;  1HR0 H;  5IT9 W;  3U1K A;  1UG8 A;  2UXC H;  1AN7 A;  4DR7 H;  5A2Q W;  1XMQ H;  1J5E H;  4JI3 H;  4EC5 A;  1EC6 A;  2UU9 H;  4YHH H;  1ZZI A;  4JI4 H;  1N34 H;  1WHR A;  4B3S H;  2CTJ A;  3OSS D;  2M6Q A;  4LF8 H;  4DV6 H;  2FMR A;  4B3T H;  1VIG A;  4B3R H;  1SEI A;  2P2R A;  2HH3 A;  2LTL A;  4B3M H;  1I94 H;  4K0K H;  1XRH A;  3QD7 X;  4DV4 H;  2AXY A;  4AIM A;  3L7Z C;  3GKU A;  2FPH X;  4WAN A;  4DV1 H;  2QND A;  2PT7 G;  4AM3 A;  4FJU A;  2YQR A;  2UUB H;  1FJG H;  1PQX A;  2VKC A;  4X64 H;  4X65 H;  1VBI A;  2UXD H;  4LF6 H;  2FFM A;  1XNR H;  2JZX A;  2CTE A;  5LL6 b;  4G08 A;  1DT4 A;  2CTM A;  1WE8 A;  4PDB A;  3SB1 A;  4JI2 H;  3UOE A;  4DV2 H;  1DTJ A;  2BL5 A;  3I0P A;  1IBL H;  4IFD G;  4B8C D;  4DR4 H;  4B8T A;  4GKK H;  1I6U A;  4JVH A;  4JV5 H;  4QMF B;  3J81 W;  1HNZ H;  4NBQ A;  4JI1 H;  2JVZ A;  4LIJ A;  3GR5 A;  1FKA H;  2Y3M A;  2CTF A;  2MJH A;  1WVN A; 
#chains in the Genus database with same CATH homology
 2NN6 G;  2DGR A;  1X4M A;  2JEB I;  2HH2 A;  2ANN A;  3AEV B;  3VKE A;  2OPU A;  1J4W A;  4OO1 G;  2JA9 A;  2OPV A;  2CPQ A;  2AXY A;  4AIM A;  3L7Z C;  3V69 A;  4WAN A;  2QND A;  1ZTG A;  4AM3 A;  2PY9 A;  2YQR A;  1ZZK A;  4BA2 I;  2CTL A;  3U1K A;  1VIH A;  2JE6 I;  2E3U A;  2JZX A;  2CTE A;  1DT4 A;  4JVY A;  1EC6 A;  2CTM A;  1WE8 A;  2BA0 A;  4WAL A;  1K1G A;  1X4N A;  1ZZI A;  1DTJ A;  2BL5 A;  4IFD G;  2CTJ A;  4BA1 I;  4B8T A;  5C0X G;  4JVH A;  5JEA G;  2FMR A;  1ZZJ A;  2PQU A;  2CTK A;  5K36 G;  4QMF B;  2ANR A;  1KHM A;  2JEA I;  4NBQ A;  1VIG A;  2JVZ A;  1TUA A;  4LIJ A;  1J5K A;  2P2R A;  2HH3 A;  2Z0S A;  2CTF A;  2MJH A;  1WVN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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