1ZZKA

Crystal structure of the third kh domain of hnrnp k at 0.95a resolution
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
80
structure length
80
Chain Sequence
MGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYSGKFF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dna binding protein
molecule keywords Heterogeneous nuclear ribonucleoprotein K
publication title X-Ray Crystallographic and NMR Studies of the Third KH Domain of hnRNP K in Complex with Single-Stranded Nucleic Acids
pubmed doi rcsb
source organism Homo sapiens
total genus 26
structure length 80
sequence length 80
ec nomenclature
pdb deposition date 2005-06-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00013 KH_1 KH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 1zzkA00
2DGRA 2CTLA 1ZZJA 2JE6I 2ANRA 2ANNA 5C0XG 1DT4A 4B8TA 5K36G 2CTEA 4JVYA 2Z0SA 2OPVA 1EC6A 2AXYA 1J5KA 4AIMA 3AEVB 1KHMA 4JVHA 4OO1G 2JEBI 2CTMA 2BA0A 2JVZA 2PQUA 1ZZKA 1VIGA 1WE8A 4BA1I 2E3UA 1VIHA 3L7ZC 2CTFA 2JA9A 1TUAA 2OPUA 4AM3A 2CTKA 2BL5A 2HH2A 2HH3A 2NN6G 4LIJA 4IFDG 1DTJA 2CPQA 5JEAG 4QMFB 2QNDA 1J4WA 2P2RA 1ZTGA 2YQRA 2JEAI 4WANA 2CTJA 3V69A 3VKEA 1X4MA 1X4NA 4WALA 1WVNA 3U1KA 1ZZIA 2MJHA 4NBQA 2JZXA 2FMRA 2PY9A 4BA2I 1K1GA
chains in the Genus database with same CATH superfamily
4LFBH 4JVYA 4DR1H 4LF9H 4JV5H 3RF2A 2UUCH 1X9ZA 3I0PA 1XNQH 4G08A 4X62H 2CTMA 4B3RH 3OTOH 4PDBA 1WTJA 3QD7X 1VIGA 1XMOH 2LTLA 4FJUA 2E3UA 3L7ZC 2HHHH 2UXDH 4LF4H 1SEIA 2BL5A 4LIJA 1N34H 3OETA 4JI0H 5LL6b 5JEAG 1ZTGA 2UXBH 4LF8H 4WANA 3GKUA 4X65H 4YHHH 2JZXA 2FMRA 3SB1A 1KHMA 1J5EH 1K1GA 2UU9H 4DV5H 4AQYH 2JE6I 3J80W 1ZZJA 2ANRA 1N33H 1X0AA 2F4VH 4B8TA 2CTEA 2D9IA 3JAMW 2OPVA 3J7AK 5DT9A 1J5KA 4AIMA 1XRHA 1F0XA 4B3MH 2G8YA 2Y3MA 4NZTM 2M6QA 4LF7H 2BA0A 3AEVB 2UUBH 3UOEA 2JVZA 2VQFH 3T1HH 3T1YH 2PQUA 1Z2IA 4DV3H 2CWHA 4BA1I 4X66H 1XNRH 5LMNH 3OSSD 1NXUA 3KDGA 2K1HA 2ZM6H 2CTKA 1FKAH 4X64H 2UUAH 4NXMH 4AM3A 1DTJA 2P2RA 4QMFB 4JI4H 4YY3H 2JEAI 3VKEA 2LTMA 1X4MA 4K0KH 1VBIA 4LFAH 3U1KA 2M8WA 4JI3H 4NBQA 4DR6H 1N32H 3NCVA 4DV4H 4OD6A 4JI7H 1S03G 2DGRA 4DV1H 4LF5H 4NZRM 1IBLH 1MSZA 4DV7H 4NXNH 1DT4A 4DR4H 2Z0SA 4DUYH 2AXYA 2LF0A 2FFMA 2ZQEA 5IT9W 4FJSA 1HR0H 2JEBI 1ODHA 3GABA 2PT7G 1IBMH 4JVHA 4DR2H 1I6UA 4OCHA 4LFCH 1HNXH 1VIHA 5LMUH 2JA9A 4DUZH 4B3SH 5A2QW 4EC5A 5IWAH 4JI1H 4OX9H 4IFDG 4B3TH 1HNWH 3FAUA 2X06A 1I94H 2CPMA 1N36H 1FJGH 2CTJA 3V69A 2UXCH 1S20A 3KDKA 5BR8H 1ZZIA 4B8CD 1V8CA 2FPHX 4JI8H 2PY9A 4BA2I 1XMQH 4JI6H 1UG8A 2CTLA 3EZJA 5C0XG 4DV2H 4LF6H 2ANNA 1HNZH 5K36G 2E5LH 1EC6A 4JI2H 4OO1G 2CWFA 2A1SA 1PQXA 3J81W 4DV6H 1ZZKA 1WE8A 4DR7H 4KHPH 1V9NA 4DV0H 4DR3H 4GKKH 2CTFA 4DR5H 1TUAA 4E9JA 2OPUA 1AN7A 2VKCA 3GR5A 4JI5H 2HH3A 2HH2A 2NN6G 4GKJH 4H8AA 2CPQA 1J4WA 2QNDA 2VQEH 2YQRA 4JYAH 1X4NA 5FLXW 1WVNA 4WALA 2MJHA 2O4CA 2LRRA 1WHRA 1IBKH
chains in the Genus database with same CATH topology
2DGRA 2CTLA 1ZZJA 2JE6I 2ANRA 2ANNA 5C0XG 1DT4A 4B8TA 5K36G 2CTEA 4JVYA 2Z0SA 2OPVA 1EC6A 2AXYA 1J5KA 4AIMA 3AEVB 1KHMA 4JVHA 4OO1G 2JEBI 2CTMA 2BA0A 2JVZA 2PQUA 1ZZKA 1VIGA 1WE8A 4BA1I 2E3UA 1VIHA 3L7ZC 2CTFA 2JA9A 1TUAA 2OPUA 4AM3A 2CTKA 2BL5A 2HH2A 2HH3A 2NN6G 4LIJA 4IFDG 1DTJA 2CPQA 5JEAG 4QMFB 2QNDA 1J4WA 2P2RA 1ZTGA 2YQRA 2JEAI 4WANA 2CTJA 3V69A 3VKEA 1X4MA 1X4NA 4WALA 1WVNA 3U1KA 1ZZIA 2MJHA 4NBQA 2JZXA 2FMRA 2PY9A 4BA2I 1K1GA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DGR A;  2CTL A;  1ZZJ A;  2JE6 I;  2ANR A;  2ANN A;  5C0X G;  1DT4 A;  4B8T A;  5K36 G;  2CTE A;  4JVY A;  2Z0S A;  2OPV A;  1EC6 A;  2AXY A;  1J5K A;  4AIM A;  3AEV B;  1KHM A;  4JVH A;  4OO1 G;  2JEB I;  2CTM A;  2BA0 A;  2JVZ A;  2PQU A;  1ZZK A;  1VIG A;  1WE8 A;  4BA1 I;  2E3U A;  1VIH A;  3L7Z C;  2CTF A;  2JA9 A;  1TUA A;  2OPU A;  4AM3 A;  2CTK A;  2BL5 A;  2HH2 A;  2HH3 A;  2NN6 G;  4LIJ A;  4IFD G;  1DTJ A;  2CPQ A;  5JEA G;  4QMF B;  2QND A;  1J4W A;  2P2R A;  1ZTG A;  2YQR A;  2JEA I;  4WAN A;  2CTJ A;  3V69 A;  3VKE A;  1X4M A;  1X4N A;  4WAL A;  1WVN A;  3U1K A;  1ZZI A;  2MJH A;  4NBQ A;  2JZX A;  2FMR A;  2PY9 A;  4BA2 I;  1K1G A; 
#chains in the Genus database with same CATH topology
 4LFB H;  4JVY A;  4DR1 H;  4LF9 H;  4JV5 H;  3RF2 A;  2UUC H;  1X9Z A;  3I0P A;  1XNQ H;  4G08 A;  4X62 H;  2CTM A;  4B3R H;  3OTO H;  4PDB A;  1WTJ A;  3QD7 X;  1VIG A;  1XMO H;  2LTL A;  4FJU A;  2E3U A;  3L7Z C;  2HHH H;  2UXD H;  4LF4 H;  1SEI A;  2BL5 A;  4LIJ A;  1N34 H;  3OET A;  4JI0 H;  5LL6 b;  5JEA G;  1ZTG A;  2UXB H;  4LF8 H;  4WAN A;  3GKU A;  4X65 H;  4YHH H;  2JZX A;  2FMR A;  3SB1 A;  1KHM A;  1J5E H;  1K1G A;  2UU9 H;  4DV5 H;  4AQY H;  2JE6 I;  3J80 W;  1ZZJ A;  2ANR A;  1N33 H;  1X0A A;  2F4V H;  4B8T A;  2CTE A;  2D9I A;  3JAM W;  2OPV A;  3J7A K;  5DT9 A;  1J5K A;  4AIM A;  1XRH A;  1F0X A;  4B3M H;  2G8Y A;  2Y3M A;  4NZT M;  2M6Q A;  4LF7 H;  2BA0 A;  3AEV B;  2UUB H;  3UOE A;  2JVZ A;  2VQF H;  3T1H H;  3T1Y H;  2PQU A;  1Z2I A;  4DV3 H;  2CWH A;  4BA1 I;  4X66 H;  1XNR H;  5LMN H;  3OSS D;  1NXU A;  3KDG A;  2K1H A;  2ZM6 H;  2CTK A;  1FKA H;  4X64 H;  2UUA H;  4NXM H;  4AM3 A;  1DTJ A;  2P2R A;  4QMF B;  4JI4 H;  4YY3 H;  2JEA I;  3VKE A;  2LTM A;  1X4M A;  4K0K H;  1VBI A;  4LFA H;  3U1K A;  2M8W A;  4JI3 H;  4NBQ A;  4DR6 H;  1N32 H;  3NCV A;  4DV4 H;  4OD6 A;  4JI7 H;  1S03 G;  2DGR A;  4DV1 H;  4LF5 H;  4NZR M;  1IBL H;  1MSZ A;  4DV7 H;  4NXN H;  1DT4 A;  4DR4 H;  2Z0S A;  4DUY H;  2AXY A;  2LF0 A;  2FFM A;  2ZQE A;  5IT9 W;  4FJS A;  1HR0 H;  2JEB I;  1ODH A;  3GAB A;  2PT7 G;  1IBM H;  4JVH A;  4DR2 H;  1I6U A;  4OCH A;  4LFC H;  1HNX H;  1VIH A;  5LMU H;  2JA9 A;  4DUZ H;  4B3S H;  5A2Q W;  4EC5 A;  5IWA H;  4JI1 H;  4OX9 H;  4IFD G;  4B3T H;  1HNW H;  3FAU A;  2X06 A;  1I94 H;  2CPM A;  1N36 H;  1FJG H;  2CTJ A;  3V69 A;  2UXC H;  1S20 A;  3KDK A;  5BR8 H;  1ZZI A;  4B8C D;  1V8C A;  2FPH X;  4JI8 H;  2PY9 A;  4BA2 I;  1XMQ H;  4JI6 H;  1UG8 A;  2CTL A;  3EZJ A;  5C0X G;  4DV2 H;  4LF6 H;  2ANN A;  1HNZ H;  5K36 G;  2E5L H;  1EC6 A;  4JI2 H;  4OO1 G;  2CWF A;  2A1S A;  1PQX A;  3J81 W;  4DV6 H;  1ZZK A;  1WE8 A;  4DR7 H;  4KHP H;  1V9N A;  4DV0 H;  4DR3 H;  4GKK H;  2CTF A;  4DR5 H;  1TUA A;  4E9J A;  2OPU A;  1AN7 A;  2VKC A;  3GR5 A;  4JI5 H;  2HH3 A;  2HH2 A;  2NN6 G;  4GKJ H;  4H8A A;  2CPQ A;  1J4W A;  2QND A;  2VQE H;  2YQR A;  4JYA H;  1X4N A;  5FLX W;  1WVN A;  4WAL A;  2MJH A;  2O4C A;  2LRR A;  1WHR A;  1IBK H; 
#chains in the Genus database with same CATH homology
 2DGR A;  2CTL A;  1ZZJ A;  2JE6 I;  2ANR A;  2ANN A;  5C0X G;  1DT4 A;  4B8T A;  5K36 G;  2CTE A;  4JVY A;  2Z0S A;  2OPV A;  1EC6 A;  2AXY A;  1J5K A;  4AIM A;  3AEV B;  1KHM A;  4JVH A;  4OO1 G;  2JEB I;  2CTM A;  2BA0 A;  2JVZ A;  2PQU A;  1ZZK A;  1VIG A;  1WE8 A;  4BA1 I;  2E3U A;  1VIH A;  3L7Z C;  2CTF A;  2JA9 A;  1TUA A;  2OPU A;  4AM3 A;  2CTK A;  2BL5 A;  2HH2 A;  2HH3 A;  2NN6 G;  4LIJ A;  4IFD G;  1DTJ A;  2CPQ A;  5JEA G;  4QMF B;  2QND A;  1J4W A;  2P2R A;  1ZTG A;  2YQR A;  2JEA I;  4WAN A;  2CTJ A;  3V69 A;  3VKE A;  1X4M A;  1X4N A;  4WAL A;  1WVN A;  3U1K A;  1ZZI A;  2MJH A;  4NBQ A;  2JZX A;  2FMR A;  2PY9 A;  4BA2 I;  1K1G A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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