2JVZA

Solution nmr structure of the second and third kh domains of ksrp
Total Genus 40
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
164
structure length
164
Chain Sequence
GTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRERDQGGFGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQSLRSG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Splicing
source organism Homo sapiens
publication title Solution NMR Structure of the Second and Third KH Domains of KSRP
rcsb
molecule keywords Far upstream element-binding protein 2
total genus 40
structure length 164
sequence length 164
ec nomenclature
pdb deposition date 2007-09-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00013 KH_1 KH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 2jvzA02
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 2jvzA01
2ANNA 2BL5A 4AIMA 2P2RA 2DGRA 2CTFA 5K36G 2CTMA 2Z0SA 1ZZIA 1VIGA 2QNDA 4NBQA 1DT4A 1J4WA 2E3UA 4AM3A 4QMFB 2OPUA 2CTJA 5JEAG 1WE8A 2JE6I 2ANRA 4BA2I 1VIHA 4IFDG 1ZZKA 5C0XG 1ZTGA 1TUAA 2MJHA 4JVYA 2JVZA 4B8TA 1EC6A 2PY9A 4BA1I 1K1GA 2FMRA 2JEBI 2NN6G 2BA0A 2YQRA 1WVNA 2AXYA 3VKEA 3AEVB 1ZZJA 4WANA 4JVHA 2CTKA 4OO1G 1X4MA 2CPQA 2OPVA 4LIJA 2PQUA 1DTJA 2CTLA 1KHMA 1J5KA 2HH3A 2HH2A 2JZXA 3L7ZC 3U1KA 2CTEA 3V69A 4WALA 2JA9A 2JEAI 1X4NA
chains in the Genus database with same CATH superfamily
3OSSD 4AIMA 2DGRA 4B3MH 2A1SA 4JI7H 4LF5H 2QNDA 1XMQH 4AM3A 1N33H 4QMFB 4B3RH 2OPUA 3J81W 5LMUH 1WE8A 2JE6I 2ZQEA 4BA2I 1UG8A 2CWHA 5C0XG 1ZTGA 1HR0H 4B8TA 2LTLA 4NZTM 1WHRA 4BA1I 2FMRA 1HNZH 4JI1H 5DT9A 3AEVB 4E9JA 3VKEA 1VBIA 4JI8H 4GKJH 1IBKH 4NXNH 4KHPH 4FJSA 2UU9H 3SB1A 1N36H 1DTJA 4WALA 2HH2A 2Y3MA 2CTEA 1F0XA 2F4VH 2K1HA 4LF6H 2JA9A 4JI6H 3KDKA 4JI5H 1V8CA 2CTMA 1XNRH 1DT4A 5LL6b 4X62H 3NCVA 3J80W 4DV5H 2CTJA 4OCHA 5JEAG 5FLXW 4FJUA 4IFDG 1ZZKA 1TUAA 2UUAH 2UUBH 3GKUA 5IWAH 1EC6A 4LFCH 4X64H 2PY9A 4DR6H 2VKCA 2JEBI 4DR5H 4GKKH 2NN6G 2BA0A 3QD7X 2AXYA 4WANA 5IT9W 1N32H 4DUYH 2CTKA 2HHHH 1XNQH 1NXUA 3T1HH 1SEIA 3OETA 1I6UA 1X4MA 2OPVA 4LIJA 4LF7H 1J5KA 1S20A 4B3TH 1S03G 3U1KA 1XMOH 4DV4H 4LF8H 1IBMH 5LMNH 1X4NA 2ZM6H 4DV2H 4DR1H 2CTFA 2PT7G 4LF9H 4K0KH 2Z0SA 1ZZIA 4NBQA 4B8CD 1AN7A 3EZJA 2M6QA 1VIHA 4DV1H 2UXBH 2MJHA 4OX9H 2O4CA 2LF0A 2JVZA 4DR7H 1Z2IA 4DUZH 1I94H 2CPMA 1K1GA 4EC5A 1WTJA 2YQRA 2VQFH 1WVNA 1IBLH 3FAUA 5A2QW 1ZZJA 2CWFA 3UOEA 5BR8H 4DV7H 4OO1G 4X66H 2UUCH 4LF4H 3RF2A 1FKAH 4JYAH 3OTOH 2CTLA 2E5LH 1ODHA 4PDBA 1J5EH 3V69A 4NXMH 2X06A 3GABA 2FFMA 4G08A 1MSZA 4DV0H 1HNXH 2ANNA 4YHHH 2BL5A 1PQXA 4LFBH 2P2RA 2LTMA 5K36G 4OD6A 1VIGA 1J4WA 4LFAH 2E3UA 4DR2H 1V9NA 4JI2H 2ANRA 3GR5A 4DR3H 4B3SH 4JV5H 4JVYA 2D9IA 1HNWH 4DV3H 2G8YA 4NZRM 2UXDH 2FPHX 4DR4H 3T1YH 4H8AA 4JVHA 1X0AA 1X9ZA 3I0PA 4DV6H 4JI3H 1FJGH 4JI0H 4X65H 2CPQA 2PQUA 4AQYH 1KHMA 1N34H 3J7AK 4YY3H 2LRRA 2HH3A 2JZXA 3L7ZC 2M8WA 3JAMW 4JI4H 3KDGA 2UXCH 1XRHA 2JEAI 2VQEH
chains in the Genus database with same CATH topology
2ANNA 2BL5A 4AIMA 2P2RA 2DGRA 2CTFA 5K36G 2CTMA 2Z0SA 1ZZIA 1VIGA 2QNDA 4NBQA 1DT4A 1J4WA 2E3UA 4AM3A 4QMFB 2OPUA 2CTJA 5JEAG 1WE8A 2JE6I 2ANRA 4BA2I 1VIHA 4IFDG 1ZZKA 5C0XG 1ZTGA 1TUAA 2MJHA 4JVYA 2JVZA 4B8TA 1EC6A 2PY9A 4BA1I 1K1GA 2FMRA 2JEBI 2NN6G 2BA0A 2YQRA 1WVNA 2AXYA 3VKEA 3AEVB 1ZZJA 4WANA 4JVHA 2CTKA 4OO1G 1X4MA 2CPQA 2OPVA 4LIJA 2PQUA 1DTJA 2CTLA 1KHMA 1J5KA 2HH3A 2HH2A 2JZXA 3L7ZC 3U1KA 2CTEA 3V69A 4WALA 2JA9A 2JEAI 1X4NA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ANN A;  2BL5 A;  4AIM A;  2P2R A;  2DGR A;  2CTF A;  5K36 G;  2CTM A;  2Z0S A;  1ZZI A;  1VIG A;  2QND A;  4NBQ A;  1DT4 A;  1J4W A;  2E3U A;  4AM3 A;  4QMF B;  2OPU A;  2CTJ A;  5JEA G;  1WE8 A;  2JE6 I;  2ANR A;  4BA2 I;  1VIH A;  4IFD G;  1ZZK A;  5C0X G;  1ZTG A;  1TUA A;  2MJH A;  4JVY A;  2JVZ A;  4B8T A;  1EC6 A;  2PY9 A;  4BA1 I;  1K1G A;  2FMR A;  2JEB I;  2NN6 G;  2BA0 A;  2YQR A;  1WVN A;  2AXY A;  3VKE A;  3AEV B;  1ZZJ A;  4WAN A;  4JVH A;  2CTK A;  4OO1 G;  1X4M A;  2CPQ A;  2OPV A;  4LIJ A;  2PQU A;  1DTJ A;  2CTL A;  1KHM A;  1J5K A;  2HH3 A;  2HH2 A;  2JZX A;  3L7Z C;  3U1K A;  2CTE A;  3V69 A;  4WAL A;  2JA9 A;  2JEA I;  1X4N A; 
#chains in the Genus database with same CATH topology
 3OSS D;  4AIM A;  2DGR A;  4B3M H;  2A1S A;  4JI7 H;  4LF5 H;  2QND A;  1XMQ H;  4AM3 A;  1N33 H;  4QMF B;  4B3R H;  2OPU A;  3J81 W;  5LMU H;  1WE8 A;  2JE6 I;  2ZQE A;  4BA2 I;  1UG8 A;  2CWH A;  5C0X G;  1ZTG A;  1HR0 H;  4B8T A;  2LTL A;  4NZT M;  1WHR A;  4BA1 I;  2FMR A;  1HNZ H;  4JI1 H;  5DT9 A;  3AEV B;  4E9J A;  3VKE A;  1VBI A;  4JI8 H;  4GKJ H;  1IBK H;  4NXN H;  4KHP H;  4FJS A;  2UU9 H;  3SB1 A;  1N36 H;  1DTJ A;  4WAL A;  2HH2 A;  2Y3M A;  2CTE A;  1F0X A;  2F4V H;  2K1H A;  4LF6 H;  2JA9 A;  4JI6 H;  3KDK A;  4JI5 H;  1V8C A;  2CTM A;  1XNR H;  1DT4 A;  5LL6 b;  4X62 H;  3NCV A;  3J80 W;  4DV5 H;  2CTJ A;  4OCH A;  5JEA G;  5FLX W;  4FJU A;  4IFD G;  1ZZK A;  1TUA A;  2UUA H;  2UUB H;  3GKU A;  5IWA H;  1EC6 A;  4LFC H;  4X64 H;  2PY9 A;  4DR6 H;  2VKC A;  2JEB I;  4DR5 H;  4GKK H;  2NN6 G;  2BA0 A;  3QD7 X;  2AXY A;  4WAN A;  5IT9 W;  1N32 H;  4DUY H;  2CTK A;  2HHH H;  1XNQ H;  1NXU A;  3T1H H;  1SEI A;  3OET A;  1I6U A;  1X4M A;  2OPV A;  4LIJ A;  4LF7 H;  1J5K A;  1S20 A;  4B3T H;  1S03 G;  3U1K A;  1XMO H;  4DV4 H;  4LF8 H;  1IBM H;  5LMN H;  1X4N A;  2ZM6 H;  4DV2 H;  4DR1 H;  2CTF A;  2PT7 G;  4LF9 H;  4K0K H;  2Z0S A;  1ZZI A;  4NBQ A;  4B8C D;  1AN7 A;  3EZJ A;  2M6Q A;  1VIH A;  4DV1 H;  2UXB H;  2MJH A;  4OX9 H;  2O4C A;  2LF0 A;  2JVZ A;  4DR7 H;  1Z2I A;  4DUZ H;  1I94 H;  2CPM A;  1K1G A;  4EC5 A;  1WTJ A;  2YQR A;  2VQF H;  1WVN A;  1IBL H;  3FAU A;  5A2Q W;  1ZZJ A;  2CWF A;  3UOE A;  5BR8 H;  4DV7 H;  4OO1 G;  4X66 H;  2UUC H;  4LF4 H;  3RF2 A;  1FKA H;  4JYA H;  3OTO H;  2CTL A;  2E5L H;  1ODH A;  4PDB A;  1J5E H;  3V69 A;  4NXM H;  2X06 A;  3GAB A;  2FFM A;  4G08 A;  1MSZ A;  4DV0 H;  1HNX H;  2ANN A;  4YHH H;  2BL5 A;  1PQX A;  4LFB H;  2P2R A;  2LTM A;  5K36 G;  4OD6 A;  1VIG A;  1J4W A;  4LFA H;  2E3U A;  4DR2 H;  1V9N A;  4JI2 H;  2ANR A;  3GR5 A;  4DR3 H;  4B3S H;  4JV5 H;  4JVY A;  2D9I A;  1HNW H;  4DV3 H;  2G8Y A;  4NZR M;  2UXD H;  2FPH X;  4DR4 H;  3T1Y H;  4H8A A;  4JVH A;  1X0A A;  1X9Z A;  3I0P A;  4DV6 H;  4JI3 H;  1FJG H;  4JI0 H;  4X65 H;  2CPQ A;  2PQU A;  4AQY H;  1KHM A;  1N34 H;  3J7A K;  4YY3 H;  2LRR A;  2HH3 A;  2JZX A;  3L7Z C;  2M8W A;  3JAM W;  4JI4 H;  3KDG A;  2UXC H;  1XRH A;  2JEA I;  2VQE H; 
#chains in the Genus database with same CATH homology
 2ANN A;  2BL5 A;  4AIM A;  2P2R A;  2DGR A;  2CTF A;  5K36 G;  2CTM A;  2Z0S A;  1ZZI A;  1VIG A;  2QND A;  4NBQ A;  1DT4 A;  1J4W A;  2E3U A;  4AM3 A;  4QMF B;  2OPU A;  2CTJ A;  5JEA G;  1WE8 A;  2JE6 I;  2ANR A;  4BA2 I;  1VIH A;  4IFD G;  1ZZK A;  5C0X G;  1ZTG A;  1TUA A;  2MJH A;  4JVY A;  2JVZ A;  4B8T A;  1EC6 A;  2PY9 A;  4BA1 I;  1K1G A;  2FMR A;  2JEB I;  2NN6 G;  2BA0 A;  2YQR A;  1WVN A;  2AXY A;  3VKE A;  3AEV B;  1ZZJ A;  4WAN A;  4JVH A;  2CTK A;  4OO1 G;  1X4M A;  2CPQ A;  2OPV A;  4LIJ A;  2PQU A;  1DTJ A;  2CTL A;  1KHM A;  1J5K A;  2HH3 A;  2HH2 A;  2JZX A;  3L7Z C;  3U1K A;  2CTE A;  3V69 A;  4WAL A;  2JA9 A;  2JEA I;  1X4N A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...