3SB1A

Hydrogenase expression protein huph from thiobacillus denitrificans atcc 25259
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
120
structure length
119
Chain Sequence
ARSGNALPLLREIAEHLHHLLETGEASTIDLSALPLTPGDLEWLRAELGGGEVSVTLHDGASTLDETAFPGVWWIIHRNAQGAVTTQFIEVAFVPELVKSPRADVAAARAALVLRMADL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
source organism Thiobacillus denitrificans
publication title Hydrogenase expression protein HupH from Thiobacillus denitrificans ATCC 25259
rcsb
molecule keywords hydrogenase expression protein
total genus 35
structure length 119
sequence length 120
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-06-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04809 HupH_C HupH hydrogenase expression protein, C-terminal conserved region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.140 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 Ribosomal Protein S8; Chain: A, domain 1 3sb1A01
3SB1A
chains in the Genus database with same CATH superfamily
3VKEA 1KHMA 4LIJA 2LTMA 4DR4H 4LF4H 2FFMA 3SB1A 4LFCH 5K36G 1UG8A 1F0XA 1MSZA 4EC5A 2CTLA 2JZXA 2Y3MA 3EZJA 4WALA 2E3UA 2AXYA 2HH2A 2UU9H 3AEVB 4PDBA 4B3SH 2ZQEA 4K0KH 4H8AA 3I0PA 4KHPH 4LF6H 4DR7H 4X66H 2CTEA 4YY3H 4NXNH 1HNZH 4DR6H 5LMUH 4JV5H 2CTMA 2DGRA 1AN7A 4DV3H 2UXDH 2BA0A 1X4NA 1TUAA 2UXCH 1S20A 3RF2A 4JI2H 1DT4A 2FPHX 4DV5H 1X0AA 1S03G 5JEAG 3GKUA 1ZZIA 1ZZKA 3OTOH 2UXBH 1WVNA 2QNDA 1ODHA 4JI1H 5BR8H 1SEIA 4DV1H 1K1GA 1HNWH 3J7AK 2JVZA 2F4VH 3V69A 1I6UA 2VKCA 2JEBI 1VBIA 3OSSD 5LL6b 4G08A 4E9JA 4YHHH 4DV2H 3U1KA 1J4WA 4JI0H 4JI7H 1FJGH 2LF0A 2LRRA 3KDKA 5IWAH 4B3RH 2CWFA 1X4MA 1XNQH 1Z2IA 2CTKA 4LFBH 2HH3A 3GABA 5C0XG 1XMQH 4OCHA 4AIMA 4JI8H 1XMOH 2JEAI 4OO1G 1ZTGA 3QD7X 1HR0H 3JAMW 2PY9A 1N32H 1XRHA 2O4CA 1VIHA 5A2QW 4X62H 4DV6H 2CTJA 4FJUA 2X06A 5DT9A 4DUYH 4AQYH 2UUAH 4GKJH 1WE8A 2BL5A 4DR5H 2LTLA 2JE6I 2CWHA 4JI6H 2Z0SA 4JI5H 4LF7H 2NN6G 1VIGA 4JVYA 1FKAH 1N36H 4LF9H 4DR2H 1I94H 2K1HA 4JVHA 5IT9W 4NZTM 4DV4H 1XNRH 4DUZH 4NZRM 4OD6A 3OETA 4NBQA 2D9IA 2CPMA 1IBLH 2MJHA 2FMRA 2UUBH 3J81W 4DV0H 2UUCH 1ZZJA 1J5KA 1IBKH 4AM3A 1HNXH 4QMFB 2VQFH 3J80W 4DR1H 5FLXW 1N34H 1N33H 1IBMH 3UOEA 4JYAH 1NXUA 1J5EH 4JI4H 4B8TA 2CTFA 2OPVA 2OPUA 3L7ZC 3FAUA 4B3TH 4OX9H 2YQRA 1PQXA 2ANNA 2PQUA 4DR3H 4X65H 1X9ZA 4JI3H 4GKKH 2G8YA 4NXMH 2E5LH 2PT7G 3GR5A 4B3MH 1WTJA 2ANRA 4IFDG 3KDGA 2HHHH 1V9NA 4LFAH 4FJSA 2A1SA 4WANA 3T1YH 2CPQA 2VQEH 5LMNH 2M8WA 4DV7H 1DTJA 4BA2I 3T1HH 4BA1I 2P2RA 2ZM6H 1EC6A 4LF5H 2M6QA 2JA9A 4LF8H 4X64H 1V8CA 4B8CD 1WHRA 3NCVA
chains in the Genus database with same CATH topology
4DR4H 4LF4H 3SB1A 4LFCH 1F0XA 4EC5A 2Y3MA 3EZJA 2UU9H 4PDBA 4B3SH 2ZQEA 4K0KH 4KHPH 4LF6H 4DR7H 4X66H 4NXNH 4YY3H 4DR6H 1HNZH 4JV5H 5LMUH 2UXCH 4DV3H 1AN7A 2UXDH 3RF2A 4JI2H 2FPHX 4DV5H 1S03G 3OTOH 2UXBH 1ODHA 4JI1H 5BR8H 1SEIA 4DV1H 1HNWH 3J7AK 2F4VH 1I6UA 2VKCA 3OSSD 5LL6b 4G08A 4E9JA 4YHHH 4DV2H 4JI0H 1FJGH 4JI7H 2LF0A 3KDKA 5IWAH 4B3RH 1XNQH 4LFBH 3GABA 1XMQH 4OCHA 4JI8H 1XMOH 3QD7X 1HR0H 3JAMW 1N32H 2O4CA 5A2QW 4X62H 4DV6H 4DUYH 5DT9A 4AQYH 2UUAH 4GKJH 4JI6H 4JI5H 4LF7H 1FKAH 1N36H 4LF9H 4DR2H 1I94H 5IT9W 4NZTM 4DV4H 1XNRH 4DUZH 4NZRM 4OD6A 3OETA 1IBLH 2D9IA 2UUBH 3J81W 4DV0H 2UUCH 1IBKH 1HNXH 2VQFH 3J80W 4DR1H 5FLXW 1N34H 1IBMH 4JYAH 1J5EH 4JI4H 3FAUA 4B3TH 4OX9H 4DR3H 4X65H 3NCVA 1X9ZA 4JI3H 4GKKH 4NXMH 2E5LH 2PT7G 3GR5A 4B3MH 3KDGA 2HHHH 4LFAH 3T1YH 2VQEH 5LMNH 4DV7H 3T1HH 2ZM6H 4LF5H 4LF8H 4X64H 4B8CD 1N33H 4DR5H
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SB1 A; 
#chains in the Genus database with same CATH topology
 3VKE A;  1KHM A;  4LIJ A;  2LTM A;  4DR4 H;  4LF4 H;  2FFM A;  3SB1 A;  4LFC H;  5K36 G;  1UG8 A;  1F0X A;  1MSZ A;  4EC5 A;  2CTL A;  2JZX A;  2Y3M A;  3EZJ A;  4WAL A;  2E3U A;  2AXY A;  2HH2 A;  2UU9 H;  3AEV B;  4PDB A;  4B3S H;  2ZQE A;  4K0K H;  4H8A A;  3I0P A;  4KHP H;  4LF6 H;  4DR7 H;  4X66 H;  2CTE A;  4YY3 H;  4NXN H;  1HNZ H;  4DR6 H;  5LMU H;  4JV5 H;  2CTM A;  2DGR A;  1AN7 A;  4DV3 H;  2UXD H;  2BA0 A;  1X4N A;  1TUA A;  2UXC H;  1S20 A;  3RF2 A;  4JI2 H;  1DT4 A;  2FPH X;  4DV5 H;  1X0A A;  1S03 G;  5JEA G;  3GKU A;  1ZZI A;  1ZZK A;  3OTO H;  2UXB H;  1WVN A;  2QND A;  1ODH A;  4JI1 H;  5BR8 H;  1SEI A;  4DV1 H;  1K1G A;  1HNW H;  3J7A K;  2JVZ A;  2F4V H;  3V69 A;  1I6U A;  2VKC A;  2JEB I;  1VBI A;  3OSS D;  5LL6 b;  4G08 A;  4E9J A;  4YHH H;  4DV2 H;  3U1K A;  1J4W A;  4JI0 H;  4JI7 H;  1FJG H;  2LF0 A;  2LRR A;  3KDK A;  5IWA H;  4B3R H;  2CWF A;  1X4M A;  1XNQ H;  1Z2I A;  2CTK A;  4LFB H;  2HH3 A;  3GAB A;  5C0X G;  1XMQ H;  4OCH A;  4AIM A;  4JI8 H;  1XMO H;  2JEA I;  4OO1 G;  1ZTG A;  3QD7 X;  1HR0 H;  3JAM W;  2PY9 A;  1N32 H;  1XRH A;  2O4C A;  1VIH A;  5A2Q W;  4X62 H;  4DV6 H;  2CTJ A;  4FJU A;  2X06 A;  5DT9 A;  4DUY H;  4AQY H;  2UUA H;  4GKJ H;  1WE8 A;  2BL5 A;  4DR5 H;  2LTL A;  2JE6 I;  2CWH A;  4JI6 H;  2Z0S A;  4JI5 H;  4LF7 H;  2NN6 G;  1VIG A;  4JVY A;  1FKA H;  1N36 H;  4LF9 H;  4DR2 H;  1I94 H;  2K1H A;  4JVH A;  5IT9 W;  4NZT M;  4DV4 H;  1XNR H;  4DUZ H;  4NZR M;  4OD6 A;  3OET A;  4NBQ A;  2D9I A;  2CPM A;  1IBL H;  2MJH A;  2FMR A;  2UUB H;  3J81 W;  4DV0 H;  2UUC H;  1ZZJ A;  1J5K A;  1IBK H;  4AM3 A;  1HNX H;  4QMF B;  2VQF H;  3J80 W;  4DR1 H;  5FLX W;  1N34 H;  1N33 H;  1IBM H;  3UOE A;  4JYA H;  1NXU A;  1J5E H;  4JI4 H;  4B8T A;  2CTF A;  2OPV A;  2OPU A;  3L7Z C;  3FAU A;  4B3T H;  4OX9 H;  2YQR A;  1PQX A;  2ANN A;  2PQU A;  4DR3 H;  4X65 H;  1X9Z A;  4JI3 H;  4GKK H;  2G8Y A;  4NXM H;  2E5L H;  2PT7 G;  3GR5 A;  4B3M H;  1WTJ A;  2ANR A;  4IFD G;  3KDG A;  2HHH H;  1V9N A;  4LFA H;  4FJS A;  2A1S A;  4WAN A;  3T1Y H;  2CPQ A;  2VQE H;  5LMN H;  2M8W A;  4DV7 H;  1DTJ A;  4BA2 I;  3T1H H;  4BA1 I;  2P2R A;  2ZM6 H;  1EC6 A;  4LF5 H;  2M6Q A;  2JA9 A;  4LF8 H;  4X64 H;  1V8C A;  4B8C D;  1WHR A;  3NCV A; 
#chains in the Genus database with same CATH homology
 4DR4 H;  4LF4 H;  3SB1 A;  4LFC H;  1F0X A;  4EC5 A;  2Y3M A;  3EZJ A;  2UU9 H;  4PDB A;  4B3S H;  2ZQE A;  4K0K H;  4KHP H;  4LF6 H;  4DR7 H;  4X66 H;  4NXN H;  4YY3 H;  4DR6 H;  1HNZ H;  4JV5 H;  5LMU H;  2UXC H;  4DV3 H;  1AN7 A;  2UXD H;  3RF2 A;  4JI2 H;  2FPH X;  4DV5 H;  1S03 G;  3OTO H;  2UXB H;  1ODH A;  4JI1 H;  5BR8 H;  1SEI A;  4DV1 H;  1HNW H;  3J7A K;  2F4V H;  1I6U A;  2VKC A;  3OSS D;  5LL6 b;  4G08 A;  4E9J A;  4YHH H;  4DV2 H;  4JI0 H;  1FJG H;  4JI7 H;  2LF0 A;  3KDK A;  5IWA H;  4B3R H;  1XNQ H;  4LFB H;  3GAB A;  1XMQ H;  4OCH A;  4JI8 H;  1XMO H;  3QD7 X;  1HR0 H;  3JAM W;  1N32 H;  2O4C A;  5A2Q W;  4X62 H;  4DV6 H;  4DUY H;  5DT9 A;  4AQY H;  2UUA H;  4GKJ H;  4JI6 H;  4JI5 H;  4LF7 H;  1FKA H;  1N36 H;  4LF9 H;  4DR2 H;  1I94 H;  5IT9 W;  4NZT M;  4DV4 H;  1XNR H;  4DUZ H;  4NZR M;  4OD6 A;  3OET A;  1IBL H;  2D9I A;  2UUB H;  3J81 W;  4DV0 H;  2UUC H;  1IBK H;  1HNX H;  2VQF H;  3J80 W;  4DR1 H;  5FLX W;  1N34 H;  1IBM H;  4JYA H;  1J5E H;  4JI4 H;  3FAU A;  4B3T H;  4OX9 H;  4DR3 H;  4X65 H;  3NCV A;  1X9Z A;  4JI3 H;  4GKK H;  4NXM H;  2E5L H;  2PT7 G;  3GR5 A;  4B3M H;  3KDG A;  2HHH H;  4LFA H;  3T1Y H;  2VQE H;  5LMN H;  4DV7 H;  3T1H H;  2ZM6 H;  4LF5 H;  4LF8 H;  4X64 H;  4B8C D;  1N33 H;  4DR5 H; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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