2OPUA

Solution nmr structure of the first domain of ksrp
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
89
structure length
89
Chain Sequence
ISSQLGPIHPPPRTSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDDIVSRGRGG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Rna binding protein
source organism Homo sapiens
publication title Phosphorylation-mediated unfolding of a KH domain regulates KSRP localization via 14-3-3 binding.
pubmed doi rcsb
molecule keywords KHSRP protein
total genus 24
structure length 89
sequence length 89
ec nomenclature
pdb deposition date 2007-01-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00013 KH_1 KH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 2opuA00
4B8TA 2OPVA 2BA0A 2CTJA 2JA9A 4NBQA 4AM3A 1WE8A 2DGRA 4BA1I 2JEAI 1KHMA 2JE6I 2QNDA 2NN6G 2PY9A 3AEVB 3VKEA 3V69A 2JZXA 5K36G 1TUAA 2ANRA 4OO1G 1VIGA 1WVNA 2BL5A 2PQUA 1X4MA 2HH2A 1J5KA 1J4WA 1K1GA 2JVZA 2JEBI 2OPUA 5JEAG 1ZTGA 2HH3A 4BA2I 2CTEA 5C0XG 1VIHA 2FMRA 2YQRA 2E3UA 4AIMA 3U1KA 2P2RA 4WALA 2CTFA 1ZZIA 2AXYA 4IFDG 1EC6A 1DTJA 4JVHA 2CTKA 1X4NA 2CPQA 2CTLA 4LIJA 4WANA 1ZZKA 2MJHA 1ZZJA 2ANNA 2Z0SA 1DT4A 4JVYA 3L7ZC 4QMFB 2CTMA
chains in the Genus database with same CATH superfamily
4KHPH 3GABA 2DGRA 4BA1I 2JEAI 1KHMA 4DV7H 4DR7H 4DUZH 2ZQEA 2CPMA 3JAMW 2CWFA 2HHHH 2JZXA 4AQYH 2M6QA 2ANRA 5LMNH 1HNXH 4X66H 3T1HH 2PQUA 3NCVA 2D9IA 2HH2A 2O4CA 3QD7X 4DR4H 4PDBA 2UXCH 4LFAH 2OPUA 5JEAG 1X0AA 1WHRA 5C0XG 4JI3H 3GR5A 4AIMA 4YHHH 3U1KA 4DR1H 3KDKA 4DR3H 4JI6H 2CTFA 4IFDG 1DTJA 3FAUA 1X4NA 4LIJA 1ZZKA 5A2QW 2Z0SA 2UUBH 4LF8H 1XMQH 4OD6A 4X64H 1J5EH 4GKKH 4JVYA 3KDGA 4JI8H 4B8TA 1XRHA 2JA9A 2UXBH 3J81W 1WE8A 4NXNH 2UU9H 2JE6I 2QNDA 1N36H 4B3MH 2CWHA 4LF5H 3V69A 1HR0H 4LF9H 4B3SH 2A1SA 1WVNA 2PT7G 4X62H 1S03G 2JEBI 1N32H 2VQEH 2HH3A 2F4VH 1IBMH 4B3TH 1V8CA 2FMRA 2E3UA 5LL6b 4OX9H 1S20A 2E5LH 1F0XA 3SB1A 2K1HA 1ZZIA 2AXYA 1HNWH 1N34H 1EC6A 4JI0H 1XNQH 4JVHA 2CTKA 4DV6H 1FKAH 2CTLA 4DV1H 1Z2IA 4DR2H 2FPHX 4DV4H 1DT4A 4AM3A 4WANA 1AN7A 4H8AA 3EZJA 3OETA 4NBQA 2X06A 2NN6G 1XMOH 2PY9A 5FLXW 4FJUA 4JI7H 1SEIA 4NXMH 4DR5H 1VIGA 4B3RH 2LF0A 4FJSA 2BL5A 2LRRA 4JI5H 2M8WA 1NXUA 1WTJA 1PQXA 2FFMA 2G8YA 2JVZA 1ZTGA 4LF4H 4JI1H 2CTEA 4EC5A 2VKCA 4DV0H 2P2RA 4JV5H 4OCHA 2ZM6H 1FJGH 1I94H 1I6UA 1VBIA 4JI2H 4DV2H 1ZZJA 1HNZH 2ANNA 1V9NA 1IBKH 1MSZA 3L7ZC 2CTMA 4QMFB 4DUYH 2OPVA 2BA0A 2CTJA 4NZTM 4DV5H 3T1YH 3GKUA 1ODHA 4NZRM 3UOEA 1XNRH 4K0KH 3AEVB 3VKEA 1X9ZA 4LFBH 5K36G 1TUAA 4X65H 4OO1G 3I0PA 1IBLH 3RF2A 2UXDH 1UG8A 3OSSD 4LF7H 1X4MA 1J5KA 1J4WA 2LTMA 1K1GA 3J80W 3OTOH 4JI4H 2UUAH 4BA2I 5IT9W 5BR8H 1VIHA 2YQRA 4G08A 4YY3H 2UUCH 4LFCH 4WALA 5IWAH 2Y3MA 2VQFH 4DV3H 4LF6H 4JYAH 4B8CD 3J7AK 2CPQA 5LMUH 1N33H 4E9JA 2MJHA 2LTLA 4GKJH 5DT9A 4DR6H
chains in the Genus database with same CATH topology
4B8TA 2OPVA 2BA0A 2CTJA 2JA9A 4NBQA 4AM3A 1WE8A 2DGRA 4BA1I 2JEAI 1KHMA 2JE6I 2QNDA 2NN6G 2PY9A 3AEVB 3VKEA 3V69A 2JZXA 5K36G 1TUAA 2ANRA 4OO1G 1VIGA 1WVNA 2BL5A 2PQUA 1X4MA 2HH2A 1J5KA 1J4WA 1K1GA 2JVZA 2JEBI 2OPUA 5JEAG 1ZTGA 2HH3A 4BA2I 2CTEA 5C0XG 1VIHA 2FMRA 2YQRA 2E3UA 4AIMA 3U1KA 2P2RA 4WALA 2CTFA 1ZZIA 2AXYA 4IFDG 1EC6A 1DTJA 4JVHA 2CTKA 1X4NA 2CPQA 2CTLA 4LIJA 4WANA 1ZZKA 2MJHA 1ZZJA 2ANNA 2Z0SA 1DT4A 4JVYA 3L7ZC 4QMFB 2CTMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4B8T A;  2OPV A;  2BA0 A;  2CTJ A;  2JA9 A;  4NBQ A;  4AM3 A;  1WE8 A;  2DGR A;  4BA1 I;  2JEA I;  1KHM A;  2JE6 I;  2QND A;  2NN6 G;  2PY9 A;  3AEV B;  3VKE A;  3V69 A;  2JZX A;  5K36 G;  1TUA A;  2ANR A;  4OO1 G;  1VIG A;  1WVN A;  2BL5 A;  2PQU A;  1X4M A;  2HH2 A;  1J5K A;  1J4W A;  1K1G A;  2JVZ A;  2JEB I;  2OPU A;  5JEA G;  1ZTG A;  2HH3 A;  4BA2 I;  2CTE A;  5C0X G;  1VIH A;  2FMR A;  2YQR A;  2E3U A;  4AIM A;  3U1K A;  2P2R A;  4WAL A;  2CTF A;  1ZZI A;  2AXY A;  4IFD G;  1EC6 A;  1DTJ A;  4JVH A;  2CTK A;  1X4N A;  2CPQ A;  2CTL A;  4LIJ A;  4WAN A;  1ZZK A;  2MJH A;  1ZZJ A;  2ANN A;  2Z0S A;  1DT4 A;  4JVY A;  3L7Z C;  4QMF B;  2CTM A; 
#chains in the Genus database with same CATH topology
 4KHP H;  3GAB A;  2DGR A;  4BA1 I;  2JEA I;  1KHM A;  4DV7 H;  4DR7 H;  4DUZ H;  2ZQE A;  2CPM A;  3JAM W;  2CWF A;  2HHH H;  2JZX A;  4AQY H;  2M6Q A;  2ANR A;  5LMN H;  1HNX H;  4X66 H;  3T1H H;  2PQU A;  3NCV A;  2D9I A;  2HH2 A;  2O4C A;  3QD7 X;  4DR4 H;  4PDB A;  2UXC H;  4LFA H;  2OPU A;  5JEA G;  1X0A A;  1WHR A;  5C0X G;  4JI3 H;  3GR5 A;  4AIM A;  4YHH H;  3U1K A;  4DR1 H;  3KDK A;  4DR3 H;  4JI6 H;  2CTF A;  4IFD G;  1DTJ A;  3FAU A;  1X4N A;  4LIJ A;  1ZZK A;  5A2Q W;  2Z0S A;  2UUB H;  4LF8 H;  1XMQ H;  4OD6 A;  4X64 H;  1J5E H;  4GKK H;  4JVY A;  3KDG A;  4JI8 H;  4B8T A;  1XRH A;  2JA9 A;  2UXB H;  3J81 W;  1WE8 A;  4NXN H;  2UU9 H;  2JE6 I;  2QND A;  1N36 H;  4B3M H;  2CWH A;  4LF5 H;  3V69 A;  1HR0 H;  4LF9 H;  4B3S H;  2A1S A;  1WVN A;  2PT7 G;  4X62 H;  1S03 G;  2JEB I;  1N32 H;  2VQE H;  2HH3 A;  2F4V H;  1IBM H;  4B3T H;  1V8C A;  2FMR A;  2E3U A;  5LL6 b;  4OX9 H;  1S20 A;  2E5L H;  1F0X A;  3SB1 A;  2K1H A;  1ZZI A;  2AXY A;  1HNW H;  1N34 H;  1EC6 A;  4JI0 H;  1XNQ H;  4JVH A;  2CTK A;  4DV6 H;  1FKA H;  2CTL A;  4DV1 H;  1Z2I A;  4DR2 H;  2FPH X;  4DV4 H;  1DT4 A;  4AM3 A;  4WAN A;  1AN7 A;  4H8A A;  3EZJ A;  3OET A;  4NBQ A;  2X06 A;  2NN6 G;  1XMO H;  2PY9 A;  5FLX W;  4FJU A;  4JI7 H;  1SEI A;  4NXM H;  4DR5 H;  1VIG A;  4B3R H;  2LF0 A;  4FJS A;  2BL5 A;  2LRR A;  4JI5 H;  2M8W A;  1NXU A;  1WTJ A;  1PQX A;  2FFM A;  2G8Y A;  2JVZ A;  1ZTG A;  4LF4 H;  4JI1 H;  2CTE A;  4EC5 A;  2VKC A;  4DV0 H;  2P2R A;  4JV5 H;  4OCH A;  2ZM6 H;  1FJG H;  1I94 H;  1I6U A;  1VBI A;  4JI2 H;  4DV2 H;  1ZZJ A;  1HNZ H;  2ANN A;  1V9N A;  1IBK H;  1MSZ A;  3L7Z C;  2CTM A;  4QMF B;  4DUY H;  2OPV A;  2BA0 A;  2CTJ A;  4NZT M;  4DV5 H;  3T1Y H;  3GKU A;  1ODH A;  4NZR M;  3UOE A;  1XNR H;  4K0K H;  3AEV B;  3VKE A;  1X9Z A;  4LFB H;  5K36 G;  1TUA A;  4X65 H;  4OO1 G;  3I0P A;  1IBL H;  3RF2 A;  2UXD H;  1UG8 A;  3OSS D;  4LF7 H;  1X4M A;  1J5K A;  1J4W A;  2LTM A;  1K1G A;  3J80 W;  3OTO H;  4JI4 H;  2UUA H;  4BA2 I;  5IT9 W;  5BR8 H;  1VIH A;  2YQR A;  4G08 A;  4YY3 H;  2UUC H;  4LFC H;  4WAL A;  5IWA H;  2Y3M A;  2VQF H;  4DV3 H;  4LF6 H;  4JYA H;  4B8C D;  3J7A K;  2CPQ A;  5LMU H;  1N33 H;  4E9J A;  2MJH A;  2LTL A;  4GKJ H;  5DT9 A;  4DR6 H; 
#chains in the Genus database with same CATH homology
 4B8T A;  2OPV A;  2BA0 A;  2CTJ A;  2JA9 A;  4NBQ A;  4AM3 A;  1WE8 A;  2DGR A;  4BA1 I;  2JEA I;  1KHM A;  2JE6 I;  2QND A;  2NN6 G;  2PY9 A;  3AEV B;  3VKE A;  3V69 A;  2JZX A;  5K36 G;  1TUA A;  2ANR A;  4OO1 G;  1VIG A;  1WVN A;  2BL5 A;  2PQU A;  1X4M A;  2HH2 A;  1J5K A;  1J4W A;  1K1G A;  2JVZ A;  2JEB I;  2OPU A;  5JEA G;  1ZTG A;  2HH3 A;  4BA2 I;  2CTE A;  5C0X G;  1VIH A;  2FMR A;  2YQR A;  2E3U A;  4AIM A;  3U1K A;  2P2R A;  4WAL A;  2CTF A;  1ZZI A;  2AXY A;  4IFD G;  1EC6 A;  1DTJ A;  4JVH A;  2CTK A;  1X4N A;  2CPQ A;  2CTL A;  4LIJ A;  4WAN A;  1ZZK A;  2MJH A;  1ZZJ A;  2ANN A;  2Z0S A;  1DT4 A;  4JVY A;  3L7Z C;  4QMF B;  2CTM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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