1ZTGA

Human alpha polyc binding protein kh1
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
72
structure length
72
Chain Sequence
ILTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFAMIIDKLEEDIN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Contribution of the first K-homology domain of poly(C)-binding protein 1 to its affinity and specificity for C-rich oligonucleotides
pubmed doi rcsb
molecule tags Dna, rna binding protein/dna
source organism Homo sapiens
molecule keywords POLY(RC)-BINDING PROTEIN 1
total genus 19
structure length 72
sequence length 72
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2005-05-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00013 KH_1 KH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 1ztgA00
1J4WA 1X4NA 2JZXA 4LIJA 5C0XG 4NBQA 4WALA 4BA2I 2E3UA 2NN6G 2BL5A 2PQUA 1KHMA 2JA9A 4AM3A 3AEVB 2CTEA 1DT4A 5JEAG 1ZTGA 2MJHA 4AIMA 4OO1G 4JVHA 1EC6A 1WE8A 1K1GA 2HH2A 1VIHA 3U1KA 4WANA 4B8TA 1ZZIA 2PY9A 4QMFB 2OPUA 2JEBI 2P2RA 1X4MA 1DTJA 2CTFA 1VIGA 1ZZKA 2CTKA 2FMRA 2OPVA 2QNDA 2CTJA 2JEAI 1WVNA 2CTMA 2BA0A 1TUAA 2DGRA 2JE6I 2YQRA 3V69A 4BA1I 3VKEA 2JVZA 1J5KA 5K36G 2Z0SA 2ANNA 2HH3A 2AXYA 2ANRA 3L7ZC 4JVYA 2CTLA 1ZZJA 4IFDG 2CPQA
chains in the Genus database with same CATH superfamily
1J4WA 2M6QA 5IWAH 4JYAH 2E3UA 4DR7H 4EC5A 1V8CA 4DV4H 4OX9H 2JA9A 1XMQH 4AM3A 1FKAH 2CTEA 1DT4A 2D9IA 2M8WA 4E9JA 4DUZH 4AIMA 4JVHA 4OD6A 4X64H 4B3TH 4DR6H 4YY3H 1K1GA 4JI8H 4DV6H 4GKKH 5LL6b 4K0KH 2PY9A 4LFBH 4JI7H 3J81W 4QMFB 5LMUH 4DR1H 1I6UA 2FPHX 1N33H 2P2RA 1DTJA 3SB1A 2UUAH 1TUAA 2FFMA 4JI5H 4WANA 2CPMA 3GR5A 2ANRA 1ZZJA 1N36H 3T1HH 4X62H 4B3SH 1X4NA 2JZXA 4NZRM 1ODHA 3UOEA 2ZQEA 2NN6G 2PQUA 1KHMA 2O4CA 1X9ZA 4JI2H 4DV1H 4DV3H 4PDBA 3KDKA 2F4VH 4JI4H 3QD7X 5BR8H 1HNXH 1VIHA 3KDGA 1XRHA 4LFAH 1MSZA 3J7AK 2VKCA 2Y3MA 4KHPH 4B8CD 1X4MA 1Z2IA 2FMRA 1VIGA 4X65H 2CTKA 4LF8H 2OPVA 2QNDA 2CTJA 4YHHH 1N32H 4DV5H 3VKEA 4AQYH 2G8YA 2X06A 2YQRA 1NXUA 2HHHH 5K36G 2CWHA 4JI0H 1XMOH 4DV2H 3OETA 4JVYA 4FJUA 2UXBH 2UXCH 3RF2A 2VQFH 2UUBH 1S20A 4BA2I 4NBQA 2E5LH 2ZM6H 4JI6H 1IBMH 3J80W 4DV0H 2PT7G 5JEAG 1ZTGA 4DUYH 1EC6A 4NXMH 2LTLA 4DR5H 5IT9W 1UG8A 1WE8A 1SEIA 4B3MH 2A1SA 2HH2A 3I0PA 3U1KA 1V9NA 2LF0A 1HNZH 2OPUA 1XNRH 2CTFA 1ZZKA 2UUCH 2JEAI 4GKJH 2CWFA 1WTJA 1N34H 1IBKH 2DGRA 3GKUA 2JE6I 3FAUA 3V69A 3JAMW 4BA1I 4DV7H 1J5KA 1HNWH 4B3RH 1VBIA 2AXYA 2UU9H 4LF4H 4H8AA 1HR0H 5LMNH 4IFDG 2CPQA 3EZJA 2K1HA 2LTMA 4NZTM 4LIJA 5C0XG 1AN7A 1WHRA 4WALA 4NXNH 2UXDH 2VQEH 4FJSA 2BL5A 4DR3H 3NCVA 1I94H 2LRRA 3AEVB 3GABA 2MJHA 4OO1G 1XNQH 4JI3H 1F0XA 1PQXA 4LF6H 5FLXW 4B8TA 4JI1H 1ZZIA 4LF9H 4X66H 1S03G 2JEBI 4LFCH 3OSSD 4DR2H 4LF5H 3T1YH 1WVNA 2CTMA 2BA0A 4DR4H 5A2QW 4G08A 2JVZA 3OTOH 4JV5H 2Z0SA 2ANNA 2HH3A 1IBLH 1FJGH 3L7ZC 4OCHA 2CTLA 1J5EH 4LF7H 5DT9A 1X0AA
chains in the Genus database with same CATH topology
1J4WA 1X4NA 2JZXA 4LIJA 5C0XG 4NBQA 4WALA 4BA2I 2E3UA 2NN6G 2BL5A 2PQUA 1KHMA 2JA9A 4AM3A 3AEVB 2CTEA 1DT4A 5JEAG 1ZTGA 2MJHA 4AIMA 4OO1G 4JVHA 1EC6A 1WE8A 1K1GA 2HH2A 1VIHA 3U1KA 4WANA 4B8TA 1ZZIA 2PY9A 4QMFB 2OPUA 2JEBI 2P2RA 1X4MA 1DTJA 2CTFA 1VIGA 1ZZKA 2CTKA 2FMRA 2OPVA 2QNDA 2CTJA 2JEAI 1WVNA 2CTMA 2BA0A 1TUAA 2DGRA 2JE6I 2YQRA 3V69A 4BA1I 3VKEA 2JVZA 1J5KA 5K36G 2Z0SA 2ANNA 2HH3A 2AXYA 2ANRA 3L7ZC 4JVYA 2CTLA 1ZZJA 4IFDG 2CPQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1J4W A;  1X4N A;  2JZX A;  4LIJ A;  5C0X G;  4NBQ A;  4WAL A;  4BA2 I;  2E3U A;  2NN6 G;  2BL5 A;  2PQU A;  1KHM A;  2JA9 A;  4AM3 A;  3AEV B;  2CTE A;  1DT4 A;  5JEA G;  1ZTG A;  2MJH A;  4AIM A;  4OO1 G;  4JVH A;  1EC6 A;  1WE8 A;  1K1G A;  2HH2 A;  1VIH A;  3U1K A;  4WAN A;  4B8T A;  1ZZI A;  2PY9 A;  4QMF B;  2OPU A;  2JEB I;  2P2R A;  1X4M A;  1DTJ A;  2CTF A;  1VIG A;  1ZZK A;  2CTK A;  2FMR A;  2OPV A;  2QND A;  2CTJ A;  2JEA I;  1WVN A;  2CTM A;  2BA0 A;  1TUA A;  2DGR A;  2JE6 I;  2YQR A;  3V69 A;  4BA1 I;  3VKE A;  2JVZ A;  1J5K A;  5K36 G;  2Z0S A;  2ANN A;  2HH3 A;  2AXY A;  2ANR A;  3L7Z C;  4JVY A;  2CTL A;  1ZZJ A;  4IFD G;  2CPQ A; 
#chains in the Genus database with same CATH topology
 1J4W A;  2M6Q A;  5IWA H;  4JYA H;  2E3U A;  4DR7 H;  4EC5 A;  1V8C A;  4DV4 H;  4OX9 H;  2JA9 A;  1XMQ H;  4AM3 A;  1FKA H;  2CTE A;  1DT4 A;  2D9I A;  2M8W A;  4E9J A;  4DUZ H;  4AIM A;  4JVH A;  4OD6 A;  4X64 H;  4B3T H;  4DR6 H;  4YY3 H;  1K1G A;  4JI8 H;  4DV6 H;  4GKK H;  5LL6 b;  4K0K H;  2PY9 A;  4LFB H;  4JI7 H;  3J81 W;  4QMF B;  5LMU H;  4DR1 H;  1I6U A;  2FPH X;  1N33 H;  2P2R A;  1DTJ A;  3SB1 A;  2UUA H;  1TUA A;  2FFM A;  4JI5 H;  4WAN A;  2CPM A;  3GR5 A;  2ANR A;  1ZZJ A;  1N36 H;  3T1H H;  4X62 H;  4B3S H;  1X4N A;  2JZX A;  4NZR M;  1ODH A;  3UOE A;  2ZQE A;  2NN6 G;  2PQU A;  1KHM A;  2O4C A;  1X9Z A;  4JI2 H;  4DV1 H;  4DV3 H;  4PDB A;  3KDK A;  2F4V H;  4JI4 H;  3QD7 X;  5BR8 H;  1HNX H;  1VIH A;  3KDG A;  1XRH A;  4LFA H;  1MSZ A;  3J7A K;  2VKC A;  2Y3M A;  4KHP H;  4B8C D;  1X4M A;  1Z2I A;  2FMR A;  1VIG A;  4X65 H;  2CTK A;  4LF8 H;  2OPV A;  2QND A;  2CTJ A;  4YHH H;  1N32 H;  4DV5 H;  3VKE A;  4AQY H;  2G8Y A;  2X06 A;  2YQR A;  1NXU A;  2HHH H;  5K36 G;  2CWH A;  4JI0 H;  1XMO H;  4DV2 H;  3OET A;  4JVY A;  4FJU A;  2UXB H;  2UXC H;  3RF2 A;  2VQF H;  2UUB H;  1S20 A;  4BA2 I;  4NBQ A;  2E5L H;  2ZM6 H;  4JI6 H;  1IBM H;  3J80 W;  4DV0 H;  2PT7 G;  5JEA G;  1ZTG A;  4DUY H;  1EC6 A;  4NXM H;  2LTL A;  4DR5 H;  5IT9 W;  1UG8 A;  1WE8 A;  1SEI A;  4B3M H;  2A1S A;  2HH2 A;  3I0P A;  3U1K A;  1V9N A;  2LF0 A;  1HNZ H;  2OPU A;  1XNR H;  2CTF A;  1ZZK A;  2UUC H;  2JEA I;  4GKJ H;  2CWF A;  1WTJ A;  1N34 H;  1IBK H;  2DGR A;  3GKU A;  2JE6 I;  3FAU A;  3V69 A;  3JAM W;  4BA1 I;  4DV7 H;  1J5K A;  1HNW H;  4B3R H;  1VBI A;  2AXY A;  2UU9 H;  4LF4 H;  4H8A A;  1HR0 H;  5LMN H;  4IFD G;  2CPQ A;  3EZJ A;  2K1H A;  2LTM A;  4NZT M;  4LIJ A;  5C0X G;  1AN7 A;  1WHR A;  4WAL A;  4NXN H;  2UXD H;  2VQE H;  4FJS A;  2BL5 A;  4DR3 H;  3NCV A;  1I94 H;  2LRR A;  3AEV B;  3GAB A;  2MJH A;  4OO1 G;  1XNQ H;  4JI3 H;  1F0X A;  1PQX A;  4LF6 H;  5FLX W;  4B8T A;  4JI1 H;  1ZZI A;  4LF9 H;  4X66 H;  1S03 G;  2JEB I;  4LFC H;  3OSS D;  4DR2 H;  4LF5 H;  3T1Y H;  1WVN A;  2CTM A;  2BA0 A;  4DR4 H;  5A2Q W;  4G08 A;  2JVZ A;  3OTO H;  4JV5 H;  2Z0S A;  2ANN A;  2HH3 A;  1IBL H;  1FJG H;  3L7Z C;  4OCH A;  2CTL A;  1J5E H;  4LF7 H;  5DT9 A;  1X0A A; 
#chains in the Genus database with same CATH homology
 1J4W A;  1X4N A;  2JZX A;  4LIJ A;  5C0X G;  4NBQ A;  4WAL A;  4BA2 I;  2E3U A;  2NN6 G;  2BL5 A;  2PQU A;  1KHM A;  2JA9 A;  4AM3 A;  3AEV B;  2CTE A;  1DT4 A;  5JEA G;  1ZTG A;  2MJH A;  4AIM A;  4OO1 G;  4JVH A;  1EC6 A;  1WE8 A;  1K1G A;  2HH2 A;  1VIH A;  3U1K A;  4WAN A;  4B8T A;  1ZZI A;  2PY9 A;  4QMF B;  2OPU A;  2JEB I;  2P2R A;  1X4M A;  1DTJ A;  2CTF A;  1VIG A;  1ZZK A;  2CTK A;  2FMR A;  2OPV A;  2QND A;  2CTJ A;  2JEA I;  1WVN A;  2CTM A;  2BA0 A;  1TUA A;  2DGR A;  2JE6 I;  2YQR A;  3V69 A;  4BA1 I;  3VKE A;  2JVZ A;  1J5K A;  5K36 G;  2Z0S A;  2ANN A;  2HH3 A;  2AXY A;  2ANR A;  3L7Z C;  4JVY A;  2CTL A;  1ZZJ A;  4IFD G;  2CPQ A; 
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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