2LTMA

Solution nmr structure of nfu1 iron-sulfur cluster scaffold homolog from homo sapiens, northeast structural genomics consortium (nesg) target hr2876b
Total Genus 20
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
107
structure length
107
Chain Sequence
MGHHHHHHSHMFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDSITVTKENEELDWNLLKPDIYATIMDFFASGLPLVTEE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Electron transport
molecule keywords NFU1 iron-sulfur cluster scaffold homolog, mitochondrial
publication title Solution NMR Structure of NFU1 Iron-Sulfur Cluster Scaffold Homolog from Homo sapiens, Northeast Structural Genomics Consortium (NESG) Target HR2876B
rcsb
source organism Homo sapiens
total genus 20
structure length 107
sequence length 107
ec nomenclature
pdb deposition date 2012-05-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08712 Nfu_N Scaffold protein Nfu/NifU N terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.70 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 Scaffold protein Nfu/NifU, N-terminal domain 2ltmA00
2FFMA 2M6QA 2K1HA 1PQXA 2LTMA 2LTLA 2M8WA
chains in the Genus database with same CATH superfamily
4QMFB 2JA9A 2YQRA 1MSZA 3RF2A 1F0XA 4JI7H 3EZJA 4LF4H 5IT9W 2QNDA 4LFAH 4B8CD 3FAUA 4NZRM 2UUBH 4DV3H 2K1HA 1UG8A 3UOEA 5BR8H 2LTLA 3OETA 1IBKH 5K36G 2M8WA 2F4VH 2BL5A 4DR4H 2P2RA 1J5EH 5FLXW 1HNZH 4G08A 3JAMW 2HH2A 1X9ZA 4FJSA 5IWAH 1X0AA 1I94H 4DUZH 2VQEH 1J4WA 2UUAH 4NXNH 2Y3MA 4BA1I 2CTLA 1SEIA 3OSSD 4B3SH 4DR2H 3J7AK 3KDGA 2PY9A 4LFBH 1S20A 1ZZKA 2E5LH 2X06A 4JI4H 3GKUA 4JI2H 4JI6H 4KHPH 4EC5A 3SB1A 4OCHA 1K1GA 4NXMH 4YHHH 1I6UA 1V8CA 4DR3H 1N32H 1XNQH 3T1HH 5LMNH 4DUYH 1FKAH 4X62H 1DTJA 4JYAH 2FPHX 2LTMA 2OPUA 2CWFA 1HNXH 2UUCH 4JI8H 2CTEA 3KDKA 2A1SA 2JVZA 4DV2H 1ZZIA 3GABA 1XRHA 2M6QA 4LF7H 2FMRA 2UXDH 1V9NA 4X66H 1X4MA 3I0PA 4AQYH 1VIGA 2JEBI 2O4CA 4DV7H 4DR6H 4LF5H 1WHRA 1X4NA 1VBIA 4GKKH 4WANA 4DV6H 1WVNA 1S03G 4NZTM 4B3TH 4LF6H 2JZXA 4JI3H 2CWHA 4JI0H 4LFCH 2VQFH 4OO1G 4IFDG 4DV4H 4FJUA 3L7ZC 4BA2I 1ODHA 2CTKA 4NBQA 3VKEA 2PQUA 3U1KA 2CTJA 1EC6A 2CPMA 2Z0SA 2CPQA 1N33H 4OD6A 2LRRA 1J5KA 1WE8A 1Z2IA 2PT7G 2D9IA 2ANRA 3T1YH 1IBLH 4E9JA 1VIHA 4H8AA 3NCVA 2HHHH 2DGRA 4B3MH 1FJGH 4WALA 4JVYA 1HNWH 3OTOH 3AEVB 4DV5H 3V69A 1TUAA 2G8YA 1DT4A 4B8TA 2UU9H 2AXYA 2UXBH 2JEAI 2ANNA 2ZQEA 1N36H 4DR5H 4GKJH 1WTJA 1XMOH 4DR1H 3GR5A 4K0KH 1N34H 4JI5H 2LF0A 2MJHA 1IBMH 1AN7A 2CTFA 3J80W 4JVHA 2VKCA 3J81W 1KHMA 2ZM6H 2OPVA 2NN6G 5A2QW 4DV1H 2CTMA 4DR7H 2FFMA 1XMQH 4DV0H 4LF8H 1XNRH 5C0XG 4LIJA 1PQXA 5LMUH 1ZZJA 2E3UA 5LL6b 1ZTGA 4X64H 2UXCH 4AIMA 1HR0H 2BA0A 2JE6I 4YY3H 5JEAG 5DT9A 2HH3A 4OX9H 4AM3A 3QD7X 4PDBA 4JV5H 4JI1H 4B3RH 4X65H 1NXUA 4LF9H
chains in the Genus database with same CATH topology
2FFMA 2M6QA 2K1HA 1PQXA 2LTMA 2LTLA 2M8WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FFM A;  2M6Q A;  2K1H A;  1PQX A;  2LTM A;  2LTL A;  2M8W A; 
#chains in the Genus database with same CATH topology
 4QMF B;  2JA9 A;  2YQR A;  1MSZ A;  3RF2 A;  1F0X A;  4JI7 H;  3EZJ A;  4LF4 H;  5IT9 W;  2QND A;  4LFA H;  4B8C D;  3FAU A;  4NZR M;  2UUB H;  4DV3 H;  2K1H A;  1UG8 A;  3UOE A;  5BR8 H;  2LTL A;  3OET A;  1IBK H;  5K36 G;  2M8W A;  2F4V H;  2BL5 A;  4DR4 H;  2P2R A;  1J5E H;  5FLX W;  1HNZ H;  4G08 A;  3JAM W;  2HH2 A;  1X9Z A;  4FJS A;  5IWA H;  1X0A A;  1I94 H;  4DUZ H;  2VQE H;  1J4W A;  2UUA H;  4NXN H;  2Y3M A;  4BA1 I;  2CTL A;  1SEI A;  3OSS D;  4B3S H;  4DR2 H;  3J7A K;  3KDG A;  2PY9 A;  4LFB H;  1S20 A;  1ZZK A;  2E5L H;  2X06 A;  4JI4 H;  3GKU A;  4JI2 H;  4JI6 H;  4KHP H;  4EC5 A;  3SB1 A;  4OCH A;  1K1G A;  4NXM H;  4YHH H;  1I6U A;  1V8C A;  4DR3 H;  1N32 H;  1XNQ H;  3T1H H;  5LMN H;  4DUY H;  1FKA H;  4X62 H;  1DTJ A;  4JYA H;  2FPH X;  2LTM A;  2OPU A;  2CWF A;  1HNX H;  2UUC H;  4JI8 H;  2CTE A;  3KDK A;  2A1S A;  2JVZ A;  4DV2 H;  1ZZI A;  3GAB A;  1XRH A;  2M6Q A;  4LF7 H;  2FMR A;  2UXD H;  1V9N A;  4X66 H;  1X4M A;  3I0P A;  4AQY H;  1VIG A;  2JEB I;  2O4C A;  4DV7 H;  4DR6 H;  4LF5 H;  1WHR A;  1X4N A;  1VBI A;  4GKK H;  4WAN A;  4DV6 H;  1WVN A;  1S03 G;  4NZT M;  4B3T H;  4LF6 H;  2JZX A;  4JI3 H;  2CWH A;  4JI0 H;  4LFC H;  2VQF H;  4OO1 G;  4IFD G;  4DV4 H;  4FJU A;  3L7Z C;  4BA2 I;  1ODH A;  2CTK A;  4NBQ A;  3VKE A;  2PQU A;  3U1K A;  2CTJ A;  1EC6 A;  2CPM A;  2Z0S A;  2CPQ A;  1N33 H;  4OD6 A;  2LRR A;  1J5K A;  1WE8 A;  1Z2I A;  2PT7 G;  2D9I A;  2ANR A;  3T1Y H;  1IBL H;  4E9J A;  1VIH A;  4H8A A;  3NCV A;  2HHH H;  2DGR A;  4B3M H;  1FJG H;  4WAL A;  4JVY A;  1HNW H;  3OTO H;  3AEV B;  4DV5 H;  3V69 A;  1TUA A;  2G8Y A;  1DT4 A;  4B8T A;  2UU9 H;  2AXY A;  2UXB H;  2JEA I;  2ANN A;  2ZQE A;  1N36 H;  4DR5 H;  4GKJ H;  1WTJ A;  1XMO H;  4DR1 H;  3GR5 A;  4K0K H;  1N34 H;  4JI5 H;  2LF0 A;  2MJH A;  1IBM H;  1AN7 A;  2CTF A;  3J80 W;  4JVH A;  2VKC A;  3J81 W;  1KHM A;  2ZM6 H;  2OPV A;  2NN6 G;  5A2Q W;  4DV1 H;  2CTM A;  4DR7 H;  2FFM A;  1XMQ H;  4DV0 H;  4LF8 H;  1XNR H;  5C0X G;  4LIJ A;  1PQX A;  5LMU H;  1ZZJ A;  2E3U A;  5LL6 b;  1ZTG A;  4X64 H;  2UXC H;  4AIM A;  1HR0 H;  2BA0 A;  2JE6 I;  4YY3 H;  5JEA G;  5DT9 A;  2HH3 A;  4OX9 H;  4AM3 A;  3QD7 X;  4PDB A;  4JV5 H;  4JI1 H;  4B3R H;  4X65 H;  1NXU A;  4LF9 H; 
#chains in the Genus database with same CATH homology
 2FFM A;  2M6Q A;  2K1H A;  1PQX A;  2LTM A;  2LTL A;  2M8W A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...