1VIGA

Nmr study of vigilin, repeat 6, 40 structures
Total Genus 9
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
71
structure length
71
Chain Sequence
INRMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGDPQGVQQAKRELLELAS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Ribonucleoprotein
molecule keywords VIGILIN
publication title Three-dimensional structure and stability of the KH domain: molecular insights into the fragile X syndrome.
pubmed doi rcsb
source organism Homo sapiens
total genus 9
structure length 71
sequence length 71
ec nomenclature
pdb deposition date 1995-11-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00013 KH_1 KH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 1vigA00
1WVNA 2CTFA 2Z0SA 4AIMA 4OO1G 4JVHA 1TUAA 2CTJA 4BA2I 1X4MA 4AM3A 4JVYA 1J4WA 4NBQA 1ZZIA 5K36G 2DGRA 2HH2A 3L7ZC 1WE8A 1ZZKA 2BL5A 2JEBI 2FMRA 4BA1I 1ZTGA 1VIHA 2JE6I 4WANA 4B8TA 2OPUA 2AXYA 3AEVB 2QNDA 1EC6A 2MJHA 1KHMA 4WALA 2PY9A 2BA0A 4QMFB 1K1GA 2JVZA 2ANNA 1ZZJA 4IFDG 2E3UA 2ANRA 2PQUA 5C0XG 2YQRA 2CPQA 2HH3A 3U1KA 3VKEA 2JA9A 2OPVA 1DT4A 1J5KA 2P2RA 2NN6G 2JEAI 1DTJA 2CTKA 4LIJA 2CTMA 1VIGA 1X4NA 2CTEA 2CTLA 2JZXA 5JEAG 3V69A
chains in the Genus database with same CATH superfamily
2LRRA 2Z0SA 2CWHA 4JI8H 1XMQH 3T1HH 1X4MA 4H8AA 3RF2A 4LFCH 4JVYA 4LF5H 2O4CA 2A1SA 2FFMA 3J7AK 1IBMH 4B8CD 4YHHH 3OSSD 2G8YA 3L7ZC 1F0XA 3OTOH 1UG8A 4JI3H 4WANA 2UXCH 4JI5H 4DV7H 4FJUA 1N33H 1X0AA 4WALA 1XMOH 4DV2H 4JI0H 2LF0A 2JVZA 1NXUA 2D9IA 5IT9W 2UUAH 4B3MH 2YQRA 3U1KA 2OPVA 1DT4A 2P2RA 3KDGA 1DTJA 4DUZH 4DR1H 2CWFA 2CTKA 2LTMA 4OX9H 2K1HA 1VIGA 1ZZIA 2CTEA 1WHRA 1WVNA 2CTFA 3QD7X 4DR2H 4NXNH 2LTLA 1TUAA 3EZJA 5LMUH 2CTJA 3GKUA 4BA2I 4B3TH 4K0KH 4AM3A 1J4WA 5A2QW 4JI2H 4NBQA 3FAUA 1S20A 4JI7H 4DV1H 2DGRA 4DR3H 4YY3H 1HNXH 4LFBH 1ZZKA 2BL5A 2JEBI 4LFAH 2FMRA 4AQYH 4NXMH 1HNWH 1AN7A 2OPUA 2AXYA 5DT9A 4LF7H 4B3RH 4LF8H 3I0PA 4DV3H 4GKKH 2F4VH 4QMFB 1J5EH 1K1GA 4DR7H 2CPMA 4X66H 3VKEA 4DUYH 1PQXA 1V8CA 3J80W 2HHHH 1X9ZA 2CTMA 1X4NA 5FLXW 2CTLA 4E9JA 4DV4H 2JZXA 5JEAG 3V69A 2PT7G 2JEAI 4AIMA 4X65H 4X62H 4JV5H 1S03G 2UXBH 1I94H 1N34H 2E5LH 3KDKA 4JI6H 2M6QA 2HH2A 2UXDH 2ZQEA 5IWAH 1IBKH 4B8TA 2UU9H 2VQFH 1EC6A 1VBIA 1XNQH 4NZRM 2UUBH 2BA0A 4KHPH 4X64H 4IFDG 1ZZJA 5LMNH 1MSZA 1WTJA 5C0XG 2ZM6H 2UUCH 2CPQA 1J5KA 5BR8H 3OETA 2JA9A 2FPHX 4GKJH 5LL6b 4OD6A 4DV5H 2VKCA 1HNZH 4DR4H 4JYAH 1I6UA 4G08A 4OO1G 4LF4H 1XRHA 4B3SH 3UOEA 4EC5A 1FKAH 4JI4H 4JVHA 3T1YH 2X06A 3JAMW 1FJGH 4OCHA 3J81W 1N32H 3NCVA 3GR5A 4DR5H 5K36G 1V9NA 1WE8A 1ZTGA 4BA1I 2VQEH 4PDBA 3GABA 1VIHA 2JE6I 1IBLH 1N36H 4NZTM 3AEVB 4LF9H 2MJHA 1KHMA 2PY9A 1SEIA 1Z2IA 4DR6H 2ANNA 2Y3MA 1HR0H 2E3UA 2ANRA 4FJSA 3SB1A 2PQUA 2M8WA 4LF6H 2HH3A 4JI1H 2NN6G 4DV0H 1ODHA 4DV6H 1XNRH 4LIJA 2QNDA
chains in the Genus database with same CATH topology
1WVNA 2CTFA 2Z0SA 4AIMA 4OO1G 4JVHA 1TUAA 2CTJA 4BA2I 1X4MA 4AM3A 4JVYA 1J4WA 4NBQA 1ZZIA 5K36G 2DGRA 2HH2A 3L7ZC 1WE8A 1ZZKA 2BL5A 2JEBI 2FMRA 4BA1I 1ZTGA 1VIHA 2JE6I 4WANA 4B8TA 2OPUA 2AXYA 3AEVB 2QNDA 1EC6A 2MJHA 1KHMA 4WALA 2PY9A 2BA0A 4QMFB 1K1GA 2JVZA 2ANNA 1ZZJA 4IFDG 2E3UA 2ANRA 2PQUA 5C0XG 2YQRA 2CPQA 2HH3A 3U1KA 3VKEA 2JA9A 2OPVA 1DT4A 1J5KA 2P2RA 2NN6G 2JEAI 1DTJA 2CTKA 4LIJA 2CTMA 1VIGA 1X4NA 2CTEA 2CTLA 2JZXA 5JEAG 3V69A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WVN A;  2CTF A;  2Z0S A;  4AIM A;  4OO1 G;  4JVH A;  1TUA A;  2CTJ A;  4BA2 I;  1X4M A;  4AM3 A;  4JVY A;  1J4W A;  4NBQ A;  1ZZI A;  5K36 G;  2DGR A;  2HH2 A;  3L7Z C;  1WE8 A;  1ZZK A;  2BL5 A;  2JEB I;  2FMR A;  4BA1 I;  1ZTG A;  1VIH A;  2JE6 I;  4WAN A;  4B8T A;  2OPU A;  2AXY A;  3AEV B;  2QND A;  1EC6 A;  2MJH A;  1KHM A;  4WAL A;  2PY9 A;  2BA0 A;  4QMF B;  1K1G A;  2JVZ A;  2ANN A;  1ZZJ A;  4IFD G;  2E3U A;  2ANR A;  2PQU A;  5C0X G;  2YQR A;  2CPQ A;  2HH3 A;  3U1K A;  3VKE A;  2JA9 A;  2OPV A;  1DT4 A;  1J5K A;  2P2R A;  2NN6 G;  2JEA I;  1DTJ A;  2CTK A;  4LIJ A;  2CTM A;  1VIG A;  1X4N A;  2CTE A;  2CTL A;  2JZX A;  5JEA G;  3V69 A; 
#chains in the Genus database with same CATH topology
 2LRR A;  2Z0S A;  2CWH A;  4JI8 H;  1XMQ H;  3T1H H;  1X4M A;  4H8A A;  3RF2 A;  4LFC H;  4JVY A;  4LF5 H;  2O4C A;  2A1S A;  2FFM A;  3J7A K;  1IBM H;  4B8C D;  4YHH H;  3OSS D;  2G8Y A;  3L7Z C;  1F0X A;  3OTO H;  1UG8 A;  4JI3 H;  4WAN A;  2UXC H;  4JI5 H;  4DV7 H;  4FJU A;  1N33 H;  1X0A A;  4WAL A;  1XMO H;  4DV2 H;  4JI0 H;  2LF0 A;  2JVZ A;  1NXU A;  2D9I A;  5IT9 W;  2UUA H;  4B3M H;  2YQR A;  3U1K A;  2OPV A;  1DT4 A;  2P2R A;  3KDG A;  1DTJ A;  4DUZ H;  4DR1 H;  2CWF A;  2CTK A;  2LTM A;  4OX9 H;  2K1H A;  1VIG A;  1ZZI A;  2CTE A;  1WHR A;  1WVN A;  2CTF A;  3QD7 X;  4DR2 H;  4NXN H;  2LTL A;  1TUA A;  3EZJ A;  5LMU H;  2CTJ A;  3GKU A;  4BA2 I;  4B3T H;  4K0K H;  4AM3 A;  1J4W A;  5A2Q W;  4JI2 H;  4NBQ A;  3FAU A;  1S20 A;  4JI7 H;  4DV1 H;  2DGR A;  4DR3 H;  4YY3 H;  1HNX H;  4LFB H;  1ZZK A;  2BL5 A;  2JEB I;  4LFA H;  2FMR A;  4AQY H;  4NXM H;  1HNW H;  1AN7 A;  2OPU A;  2AXY A;  5DT9 A;  4LF7 H;  4B3R H;  4LF8 H;  3I0P A;  4DV3 H;  4GKK H;  2F4V H;  4QMF B;  1J5E H;  1K1G A;  4DR7 H;  2CPM A;  4X66 H;  3VKE A;  4DUY H;  1PQX A;  1V8C A;  3J80 W;  2HHH H;  1X9Z A;  2CTM A;  1X4N A;  5FLX W;  2CTL A;  4E9J A;  4DV4 H;  2JZX A;  5JEA G;  3V69 A;  2PT7 G;  2JEA I;  4AIM A;  4X65 H;  4X62 H;  4JV5 H;  1S03 G;  2UXB H;  1I94 H;  1N34 H;  2E5L H;  3KDK A;  4JI6 H;  2M6Q A;  2HH2 A;  2UXD H;  2ZQE A;  5IWA H;  1IBK H;  4B8T A;  2UU9 H;  2VQF H;  1EC6 A;  1VBI A;  1XNQ H;  4NZR M;  2UUB H;  2BA0 A;  4KHP H;  4X64 H;  4IFD G;  1ZZJ A;  5LMN H;  1MSZ A;  1WTJ A;  5C0X G;  2ZM6 H;  2UUC H;  2CPQ A;  1J5K A;  5BR8 H;  3OET A;  2JA9 A;  2FPH X;  4GKJ H;  5LL6 b;  4OD6 A;  4DV5 H;  2VKC A;  1HNZ H;  4DR4 H;  4JYA H;  1I6U A;  4G08 A;  4OO1 G;  4LF4 H;  1XRH A;  4B3S H;  3UOE A;  4EC5 A;  1FKA H;  4JI4 H;  4JVH A;  3T1Y H;  2X06 A;  3JAM W;  1FJG H;  4OCH A;  3J81 W;  1N32 H;  3NCV A;  3GR5 A;  4DR5 H;  5K36 G;  1V9N A;  1WE8 A;  1ZTG A;  4BA1 I;  2VQE H;  4PDB A;  3GAB A;  1VIH A;  2JE6 I;  1IBL H;  1N36 H;  4NZT M;  3AEV B;  4LF9 H;  2MJH A;  1KHM A;  2PY9 A;  1SEI A;  1Z2I A;  4DR6 H;  2ANN A;  2Y3M A;  1HR0 H;  2E3U A;  2ANR A;  4FJS A;  3SB1 A;  2PQU A;  2M8W A;  4LF6 H;  2HH3 A;  4JI1 H;  2NN6 G;  4DV0 H;  1ODH A;  4DV6 H;  1XNR H;  4LIJ A;  2QND A; 
#chains in the Genus database with same CATH homology
 1WVN A;  2CTF A;  2Z0S A;  4AIM A;  4OO1 G;  4JVH A;  1TUA A;  2CTJ A;  4BA2 I;  1X4M A;  4AM3 A;  4JVY A;  1J4W A;  4NBQ A;  1ZZI A;  5K36 G;  2DGR A;  2HH2 A;  3L7Z C;  1WE8 A;  1ZZK A;  2BL5 A;  2JEB I;  2FMR A;  4BA1 I;  1ZTG A;  1VIH A;  2JE6 I;  4WAN A;  4B8T A;  2OPU A;  2AXY A;  3AEV B;  2QND A;  1EC6 A;  2MJH A;  1KHM A;  4WAL A;  2PY9 A;  2BA0 A;  4QMF B;  1K1G A;  2JVZ A;  2ANN A;  1ZZJ A;  4IFD G;  2E3U A;  2ANR A;  2PQU A;  5C0X G;  2YQR A;  2CPQ A;  2HH3 A;  3U1K A;  3VKE A;  2JA9 A;  2OPV A;  1DT4 A;  1J5K A;  2P2R A;  2NN6 G;  2JEA I;  1DTJ A;  2CTK A;  4LIJ A;  2CTM A;  1VIG A;  1X4N A;  2CTE A;  2CTL A;  2JZX A;  5JEA G;  3V69 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...