2JZXA

Pcbp2 kh1-kh2 domains
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
160
structure length
160
Chain Sequence
KNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLET
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Rna binding protein
molecule keywords Poly(rC)-binding protein 2
publication title Structure of the first and second KH domains of human poly-C binding protein-2 reveals insights into its regulatory mechanisms
rcsb
source organism Homo sapiens
total genus 40
structure length 160
sequence length 160
ec nomenclature
pdb deposition date 2008-01-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00013 KH_1 KH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 2jzxA01
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 2jzxA02
4WALA 1TUAA 2CTKA 4B8TA 1WVNA 4BA1I 2BL5A 2QNDA 2CTEA 1X4MA 2HH2A 4QMFB 3VKEA 1ZTGA 2PQUA 1EC6A 2ANRA 2DGRA 2JVZA 2JE6I 1J4WA 2YQRA 1WE8A 2CTFA 2CPQA 1ZZIA 2AXYA 4OO1G 3U1KA 1K1GA 2CTLA 2E3UA 4JVHA 2JZXA 2JEBI 1KHMA 2JEAI 3V69A 1VIHA 1DT4A 2NN6G 2HH3A 2PY9A 4JVYA 5JEAG 2ANNA 4NBQA 4BA2I 1VIGA 2BA0A 2OPVA 2OPUA 2FMRA 4LIJA 1J5KA 3L7ZC 2MJHA 2Z0SA 3AEVB 4IFDG 1X4NA 4WANA 1DTJA 1ZZKA 2CTMA 2CTJA 2P2RA 4AM3A 5K36G 5C0XG 2JA9A 4AIMA 1ZZJA
chains in the Genus database with same CATH superfamily
1TUAA 4JI0H 1VBIA 1X9ZA 1ODHA 4LFAH 4JI3H 5LL6b 5DT9A 2CTEA 4QMFB 4DV0H 1WHRA 4JI4H 2ANRA 4LF7H 3GR5A 4LFCH 1WE8A 4NXNH 2PT7G 4G08A 4JI5H 2CWFA 4NXMH 4DUYH 3U1KA 4DV5H 4H8AA 4OCHA 4X66H 2JEAI 3FAUA 4LF9H 4JVYA 1I6UA 4FJSA 2ANNA 3J80W 1V9NA 4DR7H 4BA2I 1IBKH 1N34H 4OD6A 1S20A 1XNRH 5FLXW 3OSSD 3L7ZC 4JI6H 3AEVB 4IFDG 4X64H 2CTMA 4DV7H 2CTJA 2E5LH 4AM3A 4X62H 4JV5H 5C0XG 2JA9A 2CPMA 2UXDH 5A2QW 4WALA 4B8TA 2VKCA 1WVNA 3OETA 4EC5A 1EC6A 1ZTGA 4B3MH 4JI1H 2UXCH 1XMOH 2DGRA 1N36H 2JE6I 2F4VH 4KHPH 2M6QA 1HR0H 4E9JA 2CPQA 1S03G 4FJUA 2Y3MA 2AXYA 4OO1G 2E3UA 1F0XA 1HNWH 1KHMA 1VIHA 2NN6G 3GKUA 4LFBH 4DR6H 2LF0A 4B8CD 1FKAH 1J5KA 2MJHA 5IWAH 4GKJH 2UUCH 4NZRM 2P2RA 2M8WA 1J4WA 3QD7X 2FFMA 4DV3H 4AIMA 4LF5H 1IBLH 4DV1H 4DUZH 5BR8H 4JYAH 4BA1I 1WTJA 2BL5A 2FPHX 3T1HH 3VKEA 1N32H 2PQUA 2LTMA 4LF8H 1UG8A 4JI2H 1XNQH 4DR1H 2VQFH 4JVHA 1K1GA 2JZXA 3UOEA 1MSZA 4DR3H 5JEAG 1IBMH 4NBQA 1AN7A 4OX9H 2BA0A 5IT9W 2OPVA 2OPUA 3T1YH 2FMRA 4LIJA 1V8CA 4DV2H 1N33H 4YY3H 4X65H 2LRRA 4YHHH 5LMNH 5K36G 4DV6H 2JVZA 3OTOH 3EZJA 4DR5H 1X0AA 1ZZJA 2CTKA 3J7AK 4DR2H 3KDKA 2QNDA 4B3SH 2A1SA 1X4MA 1PQXA 2HH2A 5LMUH 2ZQEA 2O4CA 4JI8H 3GABA 4DV4H 2YQRA 1NXUA 2CWHA 2HHHH 4LF6H 1FJGH 2CTFA 4PDBA 1ZZIA 1Z2IA 4GKKH 2CTLA 4LF4H 3J81W 2D9IA 2JEBI 4K0KH 1I94H 3NCVA 3V69A 1DT4A 2K1HA 2HH3A 2PY9A 2ZM6H 4AQYH 3KDGA 4B3RH 2G8YA 4DR4H 1HNXH 3JAMW 1VIGA 2X06A 3SB1A 4JI7H 2UUBH 1J5EH 1HNZH 3RF2A 2Z0SA 1X4NA 2LTLA 2VQEH 4WANA 1DTJA 1ZZKA 4B3TH 1XRHA 1SEIA 1XMQH 2UUAH 2UXBH 4NZTM 3I0PA 2UU9H
chains in the Genus database with same CATH topology
4WALA 1TUAA 2CTKA 4B8TA 1WVNA 4BA1I 2BL5A 2QNDA 2CTEA 1X4MA 2HH2A 4QMFB 3VKEA 1ZTGA 2PQUA 1EC6A 2ANRA 2DGRA 2JVZA 2JE6I 1J4WA 2YQRA 1WE8A 2CTFA 2CPQA 1ZZIA 2AXYA 4OO1G 3U1KA 1K1GA 2CTLA 2E3UA 4JVHA 2JZXA 2JEBI 1KHMA 2JEAI 3V69A 1VIHA 1DT4A 2NN6G 2HH3A 2PY9A 4JVYA 5JEAG 2ANNA 4NBQA 4BA2I 1VIGA 2BA0A 2OPVA 2OPUA 2FMRA 4LIJA 1J5KA 3L7ZC 2MJHA 2Z0SA 3AEVB 4IFDG 1X4NA 4WANA 1DTJA 1ZZKA 2CTMA 2CTJA 2P2RA 4AM3A 5K36G 5C0XG 2JA9A 4AIMA 1ZZJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4WAL A;  1TUA A;  2CTK A;  4B8T A;  1WVN A;  4BA1 I;  2BL5 A;  2QND A;  2CTE A;  1X4M A;  2HH2 A;  4QMF B;  3VKE A;  1ZTG A;  2PQU A;  1EC6 A;  2ANR A;  2DGR A;  2JVZ A;  2JE6 I;  1J4W A;  2YQR A;  1WE8 A;  2CTF A;  2CPQ A;  1ZZI A;  2AXY A;  4OO1 G;  3U1K A;  1K1G A;  2CTL A;  2E3U A;  4JVH A;  2JZX A;  2JEB I;  1KHM A;  2JEA I;  3V69 A;  1VIH A;  1DT4 A;  2NN6 G;  2HH3 A;  2PY9 A;  4JVY A;  5JEA G;  2ANN A;  4NBQ A;  4BA2 I;  1VIG A;  2BA0 A;  2OPV A;  2OPU A;  2FMR A;  4LIJ A;  1J5K A;  3L7Z C;  2MJH A;  2Z0S A;  3AEV B;  4IFD G;  1X4N A;  4WAN A;  1DTJ A;  1ZZK A;  2CTM A;  2CTJ A;  2P2R A;  4AM3 A;  5K36 G;  5C0X G;  2JA9 A;  4AIM A;  1ZZJ A; 
#chains in the Genus database with same CATH topology
 1TUA A;  4JI0 H;  1VBI A;  1X9Z A;  1ODH A;  4LFA H;  4JI3 H;  5LL6 b;  5DT9 A;  2CTE A;  4QMF B;  4DV0 H;  1WHR A;  4JI4 H;  2ANR A;  4LF7 H;  3GR5 A;  4LFC H;  1WE8 A;  4NXN H;  2PT7 G;  4G08 A;  4JI5 H;  2CWF A;  4NXM H;  4DUY H;  3U1K A;  4DV5 H;  4H8A A;  4OCH A;  4X66 H;  2JEA I;  3FAU A;  4LF9 H;  4JVY A;  1I6U A;  4FJS A;  2ANN A;  3J80 W;  1V9N A;  4DR7 H;  4BA2 I;  1IBK H;  1N34 H;  4OD6 A;  1S20 A;  1XNR H;  5FLX W;  3OSS D;  3L7Z C;  4JI6 H;  3AEV B;  4IFD G;  4X64 H;  2CTM A;  4DV7 H;  2CTJ A;  2E5L H;  4AM3 A;  4X62 H;  4JV5 H;  5C0X G;  2JA9 A;  2CPM A;  2UXD H;  5A2Q W;  4WAL A;  4B8T A;  2VKC A;  1WVN A;  3OET A;  4EC5 A;  1EC6 A;  1ZTG A;  4B3M H;  4JI1 H;  2UXC H;  1XMO H;  2DGR A;  1N36 H;  2JE6 I;  2F4V H;  4KHP H;  2M6Q A;  1HR0 H;  4E9J A;  2CPQ A;  1S03 G;  4FJU A;  2Y3M A;  2AXY A;  4OO1 G;  2E3U A;  1F0X A;  1HNW H;  1KHM A;  1VIH A;  2NN6 G;  3GKU A;  4LFB H;  4DR6 H;  2LF0 A;  4B8C D;  1FKA H;  1J5K A;  2MJH A;  5IWA H;  4GKJ H;  2UUC H;  4NZR M;  2P2R A;  2M8W A;  1J4W A;  3QD7 X;  2FFM A;  4DV3 H;  4AIM A;  4LF5 H;  1IBL H;  4DV1 H;  4DUZ H;  5BR8 H;  4JYA H;  4BA1 I;  1WTJ A;  2BL5 A;  2FPH X;  3T1H H;  3VKE A;  1N32 H;  2PQU A;  2LTM A;  4LF8 H;  1UG8 A;  4JI2 H;  1XNQ H;  4DR1 H;  2VQF H;  4JVH A;  1K1G A;  2JZX A;  3UOE A;  1MSZ A;  4DR3 H;  5JEA G;  1IBM H;  4NBQ A;  1AN7 A;  4OX9 H;  2BA0 A;  5IT9 W;  2OPV A;  2OPU A;  3T1Y H;  2FMR A;  4LIJ A;  1V8C A;  4DV2 H;  1N33 H;  4YY3 H;  4X65 H;  2LRR A;  4YHH H;  5LMN H;  5K36 G;  4DV6 H;  2JVZ A;  3OTO H;  3EZJ A;  4DR5 H;  1X0A A;  1ZZJ A;  2CTK A;  3J7A K;  4DR2 H;  3KDK A;  2QND A;  4B3S H;  2A1S A;  1X4M A;  1PQX A;  2HH2 A;  5LMU H;  2ZQE A;  2O4C A;  4JI8 H;  3GAB A;  4DV4 H;  2YQR A;  1NXU A;  2CWH A;  2HHH H;  4LF6 H;  1FJG H;  2CTF A;  4PDB A;  1ZZI A;  1Z2I A;  4GKK H;  2CTL A;  4LF4 H;  3J81 W;  2D9I A;  2JEB I;  4K0K H;  1I94 H;  3NCV A;  3V69 A;  1DT4 A;  2K1H A;  2HH3 A;  2PY9 A;  2ZM6 H;  4AQY H;  3KDG A;  4B3R H;  2G8Y A;  4DR4 H;  1HNX H;  3JAM W;  1VIG A;  2X06 A;  3SB1 A;  4JI7 H;  2UUB H;  1J5E H;  1HNZ H;  3RF2 A;  2Z0S A;  1X4N A;  2LTL A;  2VQE H;  4WAN A;  1DTJ A;  1ZZK A;  4B3T H;  1XRH A;  1SEI A;  1XMQ H;  2UUA H;  2UXB H;  4NZT M;  3I0P A;  2UU9 H; 
#chains in the Genus database with same CATH homology
 4WAL A;  1TUA A;  2CTK A;  4B8T A;  1WVN A;  4BA1 I;  2BL5 A;  2QND A;  2CTE A;  1X4M A;  2HH2 A;  4QMF B;  3VKE A;  1ZTG A;  2PQU A;  1EC6 A;  2ANR A;  2DGR A;  2JVZ A;  2JE6 I;  1J4W A;  2YQR A;  1WE8 A;  2CTF A;  2CPQ A;  1ZZI A;  2AXY A;  4OO1 G;  3U1K A;  1K1G A;  2CTL A;  2E3U A;  4JVH A;  2JZX A;  2JEB I;  1KHM A;  2JEA I;  3V69 A;  1VIH A;  1DT4 A;  2NN6 G;  2HH3 A;  2PY9 A;  4JVY A;  5JEA G;  2ANN A;  4NBQ A;  4BA2 I;  1VIG A;  2BA0 A;  2OPV A;  2OPU A;  2FMR A;  4LIJ A;  1J5K A;  3L7Z C;  2MJH A;  2Z0S A;  3AEV B;  4IFD G;  1X4N A;  4WAN A;  1DTJ A;  1ZZK A;  2CTM A;  2CTJ A;  2P2R A;  4AM3 A;  5K36 G;  5C0X G;  2JA9 A;  4AIM A;  1ZZJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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