2JZXA

Pcbp2 kh1-kh2 domains
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
160
structure length
160
Chain Sequence
KNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLET
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Poly(rC)-binding protein 2
publication title Structure of the first and second KH domains of human poly-C binding protein-2 reveals insights into its regulatory mechanisms
rcsb
source organism Homo sapiens
molecule tags Rna binding protein
total genus 40
structure length 160
sequence length 160
ec nomenclature
pdb deposition date 2008-01-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00013 KH_1 KH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 2jzxA01
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 2jzxA02
2E3UA 2ANNA 2JEAI 2YQRA 1J4WA 1ZZIA 2JVZA 2P2RA 1TUAA 5C0XG 3AEVB 2CTJA 1EC6A 2NN6G 4JVYA 2AXYA 2PY9A 4JVHA 4WANA 2CTLA 2JZXA 2JE6I 1ZTGA 4LIJA 1DT4A 2CTFA 4BA2I 2CPQA 3V69A 2MJHA 4B8TA 2BA0A 4QMFB 4AM3A 2OPVA 1VIGA 2CTKA 5JEAG 2BL5A 2HH2A 2JA9A 3VKEA 4NBQA 1K1GA 1X4MA 2QNDA 2FMRA 1ZZJA 1DTJA 2JEBI 2DGRA 1ZZKA 1WVNA 2CTEA 2HH3A 3L7ZC 1J5KA 4IFDG 2Z0SA 2ANRA 1KHMA 2PQUA 1WE8A 4BA1I 4WALA 1VIHA 2OPUA 1X4NA 4OO1G 3U1KA 5K36G 4AIMA 2CTMA
chains in the Genus database with same CATH superfamily
2E3UA 2LRRA 4DV4H 4JI2H 3J80W 2G8YA 2PT7G 4DUYH 5C0XG 1N33H 2E5LH 2AXYA 2CWFA 2JZXA 4DR5H 1IBLH 4FJUA 1DT4A 4DR6H 4K0KH 1HNZH 2LTMA 2VQEH 1UG8A 3KDKA 2UXCH 3JAMW 1PQXA 2BA0A 4LF9H 1VIGA 3QD7X 2CTKA 3UOEA 2BL5A 2JA9A 4DUZH 4DV7H 1K1GA 1IBMH 4LF6H 4NXNH 1X4MA 2FFMA 2QNDA 2K1HA 3OSSD 5A2QW 1V9NA 1DTJA 2JEBI 1S03G 4IFDG 3I0PA 3NCVA 2Z0SA 4DR2H 5IWAH 4NZRM 4X64H 4OO1G 4B3SH 5K36G 1J5EH 1I6UA 1I94H 2VQFH 2CTMA 4B3MH 1NXUA 5LMNH 2UU9H 4JI0H 5LL6b 1VBIA 5LMUH 1J4WA 4JI6H 1TUAA 2CTJA 3RF2A 4LF5H 1V8CA 2UUAH 4WANA 4X66H 4LFAH 2CTLA 2JE6I 1FJGH 4DV1H 1N34H 4BA2I 2ZQEA 4DV3H 2O4CA 4B8TA 4QMFB 4AM3A 4JI1H 3VKEA 1AN7A 5JEAG 2HH2A 4JI3H 1WTJA 4DV2H 4DR1H 4DR7H 4X62H 4GKJH 5IT9W 2A1SA 5DT9A 4B3TH 4FJSA 2FMRA 4AQYH 1SEIA 4E9JA 1J5KA 3FAUA 1N36H 4LF4H 3J81W 4WALA 3GABA 4NXMH 5FLXW 3J7AK 3GKUA 1S20A 3GR5A 4AIMA 1XMQH 1XRHA 4LF7H 4PDBA 1ZZIA 2P2RA 3AEVB 1EC6A 2NN6G 4JVYA 2D9IA 2ZM6H 2PY9A 4KHPH 4DR3H 5BR8H 4JI5H 2CTFA 4NZTM 2MJHA 4YY3H 4OD6A 4OX9H 2OPVA 2HHHH 4JI4H 2F4VH 1N32H 1FKAH 3KDGA 4JYAH 4DV5H 1ZZJA 1HNXH 2DGRA 2HH3A 1MSZA 2X06A 4LF8H 1X0AA 3T1YH 2ANRA 1KHMA 2PQUA 1WE8A 4B3RH 1VIHA 1XMOH 1X4NA 1F0XA 3U1KA 4LFCH 1HNWH 2LTLA 2UUCH 4X65H 4H8AA 4BA1I 1HR0H 2ANNA 2JEAI 2YQRA 4DV6H 2JVZA 4G08A 4DR4H 1ODHA 4JVHA 2CPMA 2CWHA 2FPHX 3SB1A 4YHHH 1ZTGA 1X9ZA 4LIJA 4JV5H 2CPQA 2UUBH 3V69A 2Y3MA 1WHRA 3OTOH 4EC5A 4JI8H 4NBQA 4OCHA 4GKKH 4JI7H 2LF0A 2M8WA 1XNQH 3EZJA 1ZZKA 1WVNA 2CTEA 2M6QA 3L7ZC 3OETA 4LFBH 1XNRH 1IBKH 1Z2IA 2UXDH 2UXBH 2OPUA 3T1HH 4DV0H 4B8CD 2VKCA
chains in the Genus database with same CATH topology
2E3UA 2ANNA 2JEAI 2YQRA 1J4WA 1ZZIA 2JVZA 2P2RA 1TUAA 5C0XG 3AEVB 2CTJA 1EC6A 2NN6G 4JVYA 2AXYA 2PY9A 4JVHA 4WANA 2CTLA 2JZXA 2JE6I 1ZTGA 4LIJA 1DT4A 2CTFA 4BA2I 2CPQA 3V69A 2MJHA 4B8TA 2BA0A 4QMFB 4AM3A 2OPVA 1VIGA 2CTKA 5JEAG 2BL5A 2HH2A 2JA9A 3VKEA 4NBQA 1K1GA 1X4MA 2QNDA 2FMRA 1ZZJA 1DTJA 2JEBI 2DGRA 1ZZKA 1WVNA 2CTEA 2HH3A 3L7ZC 1J5KA 4IFDG 2Z0SA 2ANRA 1KHMA 2PQUA 1WE8A 4BA1I 4WALA 1VIHA 2OPUA 1X4NA 4OO1G 3U1KA 5K36G 4AIMA 2CTMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2E3U A;  2ANN A;  2JEA I;  2YQR A;  1J4W A;  1ZZI A;  2JVZ A;  2P2R A;  1TUA A;  5C0X G;  3AEV B;  2CTJ A;  1EC6 A;  2NN6 G;  4JVY A;  2AXY A;  2PY9 A;  4JVH A;  4WAN A;  2CTL A;  2JZX A;  2JE6 I;  1ZTG A;  4LIJ A;  1DT4 A;  2CTF A;  4BA2 I;  2CPQ A;  3V69 A;  2MJH A;  4B8T A;  2BA0 A;  4QMF B;  4AM3 A;  2OPV A;  1VIG A;  2CTK A;  5JEA G;  2BL5 A;  2HH2 A;  2JA9 A;  3VKE A;  4NBQ A;  1K1G A;  1X4M A;  2QND A;  2FMR A;  1ZZJ A;  1DTJ A;  2JEB I;  2DGR A;  1ZZK A;  1WVN A;  2CTE A;  2HH3 A;  3L7Z C;  1J5K A;  4IFD G;  2Z0S A;  2ANR A;  1KHM A;  2PQU A;  1WE8 A;  4BA1 I;  4WAL A;  1VIH A;  2OPU A;  1X4N A;  4OO1 G;  3U1K A;  5K36 G;  4AIM A;  2CTM A; 
#chains in the Genus database with same CATH topology
 2E3U A;  2LRR A;  4DV4 H;  4JI2 H;  3J80 W;  2G8Y A;  2PT7 G;  4DUY H;  5C0X G;  1N33 H;  2E5L H;  2AXY A;  2CWF A;  2JZX A;  4DR5 H;  1IBL H;  4FJU A;  1DT4 A;  4DR6 H;  4K0K H;  1HNZ H;  2LTM A;  2VQE H;  1UG8 A;  3KDK A;  2UXC H;  3JAM W;  1PQX A;  2BA0 A;  4LF9 H;  1VIG A;  3QD7 X;  2CTK A;  3UOE A;  2BL5 A;  2JA9 A;  4DUZ H;  4DV7 H;  1K1G A;  1IBM H;  4LF6 H;  4NXN H;  1X4M A;  2FFM A;  2QND A;  2K1H A;  3OSS D;  5A2Q W;  1V9N A;  1DTJ A;  2JEB I;  1S03 G;  4IFD G;  3I0P A;  3NCV A;  2Z0S A;  4DR2 H;  5IWA H;  4NZR M;  4X64 H;  4OO1 G;  4B3S H;  5K36 G;  1J5E H;  1I6U A;  1I94 H;  2VQF H;  2CTM A;  4B3M H;  1NXU A;  5LMN H;  2UU9 H;  4JI0 H;  5LL6 b;  1VBI A;  5LMU H;  1J4W A;  4JI6 H;  1TUA A;  2CTJ A;  3RF2 A;  4LF5 H;  1V8C A;  2UUA H;  4WAN A;  4X66 H;  4LFA H;  2CTL A;  2JE6 I;  1FJG H;  4DV1 H;  1N34 H;  4BA2 I;  2ZQE A;  4DV3 H;  2O4C A;  4B8T A;  4QMF B;  4AM3 A;  4JI1 H;  3VKE A;  1AN7 A;  5JEA G;  2HH2 A;  4JI3 H;  1WTJ A;  4DV2 H;  4DR1 H;  4DR7 H;  4X62 H;  4GKJ H;  5IT9 W;  2A1S A;  5DT9 A;  4B3T H;  4FJS A;  2FMR A;  4AQY H;  1SEI A;  4E9J A;  1J5K A;  3FAU A;  1N36 H;  4LF4 H;  3J81 W;  4WAL A;  3GAB A;  4NXM H;  5FLX W;  3J7A K;  3GKU A;  1S20 A;  3GR5 A;  4AIM A;  1XMQ H;  1XRH A;  4LF7 H;  4PDB A;  1ZZI A;  2P2R A;  3AEV B;  1EC6 A;  2NN6 G;  4JVY A;  2D9I A;  2ZM6 H;  2PY9 A;  4KHP H;  4DR3 H;  5BR8 H;  4JI5 H;  2CTF A;  4NZT M;  2MJH A;  4YY3 H;  4OD6 A;  4OX9 H;  2OPV A;  2HHH H;  4JI4 H;  2F4V H;  1N32 H;  1FKA H;  3KDG A;  4JYA H;  4DV5 H;  1ZZJ A;  1HNX H;  2DGR A;  2HH3 A;  1MSZ A;  2X06 A;  4LF8 H;  1X0A A;  3T1Y H;  2ANR A;  1KHM A;  2PQU A;  1WE8 A;  4B3R H;  1VIH A;  1XMO H;  1X4N A;  1F0X A;  3U1K A;  4LFC H;  1HNW H;  2LTL A;  2UUC H;  4X65 H;  4H8A A;  4BA1 I;  1HR0 H;  2ANN A;  2JEA I;  2YQR A;  4DV6 H;  2JVZ A;  4G08 A;  4DR4 H;  1ODH A;  4JVH A;  2CPM A;  2CWH A;  2FPH X;  3SB1 A;  4YHH H;  1ZTG A;  1X9Z A;  4LIJ A;  4JV5 H;  2CPQ A;  2UUB H;  3V69 A;  2Y3M A;  1WHR A;  3OTO H;  4EC5 A;  4JI8 H;  4NBQ A;  4OCH A;  4GKK H;  4JI7 H;  2LF0 A;  2M8W A;  1XNQ H;  3EZJ A;  1ZZK A;  1WVN A;  2CTE A;  2M6Q A;  3L7Z C;  3OET A;  4LFB H;  1XNR H;  1IBK H;  1Z2I A;  2UXD H;  2UXB H;  2OPU A;  3T1H H;  4DV0 H;  4B8C D;  2VKC A; 
#chains in the Genus database with same CATH homology
 2E3U A;  2ANN A;  2JEA I;  2YQR A;  1J4W A;  1ZZI A;  2JVZ A;  2P2R A;  1TUA A;  5C0X G;  3AEV B;  2CTJ A;  1EC6 A;  2NN6 G;  4JVY A;  2AXY A;  2PY9 A;  4JVH A;  4WAN A;  2CTL A;  2JZX A;  2JE6 I;  1ZTG A;  4LIJ A;  1DT4 A;  2CTF A;  4BA2 I;  2CPQ A;  3V69 A;  2MJH A;  4B8T A;  2BA0 A;  4QMF B;  4AM3 A;  2OPV A;  1VIG A;  2CTK A;  5JEA G;  2BL5 A;  2HH2 A;  2JA9 A;  3VKE A;  4NBQ A;  1K1G A;  1X4M A;  2QND A;  2FMR A;  1ZZJ A;  1DTJ A;  2JEB I;  2DGR A;  1ZZK A;  1WVN A;  2CTE A;  2HH3 A;  3L7Z C;  1J5K A;  4IFD G;  2Z0S A;  2ANR A;  1KHM A;  2PQU A;  1WE8 A;  4BA1 I;  4WAL A;  1VIH A;  2OPU A;  1X4N A;  4OO1 G;  3U1K A;  5K36 G;  4AIM A;  2CTM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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