2JZXA

Pcbp2 kh1-kh2 domains
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
160
structure length
160
Chain Sequence
KNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLET
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Rna binding protein
molecule keywords Poly(rC)-binding protein 2
publication title Structure of the first and second KH domains of human poly-C binding protein-2 reveals insights into its regulatory mechanisms
rcsb
source organism Homo sapiens
total genus 40
structure length 160
sequence length 160
ec nomenclature
pdb deposition date 2008-01-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00013 KH_1 KH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 2jzxA01
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 2jzxA02
1TUAA 1WE8A 2CTEA 2E3UA 4QMFB 5C0XG 2CTKA 1ZZIA 2PQUA 3AEVB 1VIHA 4WANA 2AXYA 1X4MA 1ZTGA 1EC6A 4BA2I 2MJHA 2P2RA 2JVZA 2CTLA 2CTFA 2JEBI 2YQRA 1K1GA 2ANNA 2OPUA 4WALA 2JEAI 4JVHA 4AM3A 1ZZJA 2CTJA 3VKEA 2HH3A 1X4NA 2CPQA 2JE6I 4NBQA 3V69A 1J5KA 2BL5A 2OPVA 3L7ZC 4IFDG 1WVNA 4LIJA 4OO1G 2PY9A 2ANRA 2JA9A 2QNDA 1KHMA 2HH2A 5K36G 2FMRA 2CTMA 2NN6G 1J4WA 2BA0A 2Z0SA 2JZXA 5JEAG 4BA1I 4AIMA 1DTJA 1ZZKA 1VIGA 2DGRA 4B8TA 4JVYA 1DT4A 3U1KA
chains in the Genus database with same CATH superfamily
2ZM6H 1WE8A 4FJUA 5IT9W 4DR6H 1ZZIA 2PQUA 3AEVB 2UXCH 5LL6b 2D9IA 4OCHA 4X66H 4JI7H 1F0XA 1FJGH 2JVZA 1NXUA 4LFBH 4JI0H 2OPUA 4LF6H 1IBMH 4LFAH 1ZZJA 2CTJA 1XMOH 1XNQH 1XRHA 4EC5A 3T1HH 4DR5H 4IFDG 3GKUA 1VBIA 1HNXH 3J7AK 3GR5A 4JI6H 2HH2A 2FMRA 1N33H 1J4WA 2UUCH 1UG8A 2VQFH 4BA1I 3EZJA 1DTJA 4JI8H 4X62H 2F4VH 4JI4H 2E5LH 2VKCA 2LRRA 3SB1A 2CTEA 4B3RH 2E3UA 4QMFB 4JYAH 4K0KH 3OTOH 4DR2H 2UXBH 3I0PA 2UUAH 2AXYA 1IBLH 1SEIA 4DR7H 4GKJH 1X9ZA 1ZTGA 3J81W 4JI2H 1K1GA 1PQXA 1Z2IA 2PT7G 2ANNA 4AQYH 3KDGA 3VKEA 2LTMA 2G8YA 1FKAH 2JE6I 3V69A 1WHRA 3NCVA 4X64H 1I6UA 5DT9A 4E9JA 3FAUA 4DV7H 4LF4H 1X0AA 2CWFA 4DR1H 1HR0H 4B3SH 4JI1H 2JA9A 1ODHA 2CTMA 4B3TH 2BA0A 4JV5H 2M8WA 4OD6A 4AIMA 1VIGA 4B8CD 4B8TA 2UUBH 1DT4A 3GABA 3U1KA 1I94H 4B3MH 4JI5H 1HNWH 4DUYH 4OX9H 2UU9H 5IWAH 2CTKA 4DV6H 1VIHA 4DV4H 4LF5H 1X4MA 4G08A 1MSZA 2M6QA 2CTFA 2YQRA 1KHMA 1N34H 2LTLA 2JEAI 3OETA 5FLXW 1S20A 3RF2A 1IBKH 1X4NA 3QD7X 4NBQA 1HNZH 3JAMW 4LF9H 2OPVA 1V9NA 3L7ZC 4FJSA 4NXMH 4NXNH 4DV3H 4DV0H 2ZQEA 4OO1G 2PY9A 1WTJA 4JI3H 1N36H 5LMUH 2FFMA 2NN6G 4WALA 3OSSD 4NZRM 2A1SA 5JEAG 4NZTM 2VQEH 1ZZKA 1XNRH 2DGRA 4LF7H 2CWHA 1TUAA 3UOEA 5C0XG 4DV1H 4X65H 3KDKA 4GKKH 4WANA 2FPHX 2UXDH 4DR3H 1EC6A 4BA2I 1S03G 4DV5H 2MJHA 2P2RA 2CTLA 2JEBI 4DV2H 4JVHA 4AM3A 4KHPH 4DUZH 4DR4H 1V8CA 2X06A 2CPQA 5A2QW 1J5KA 4PDBA 2BL5A 4YY3H 1AN7A 2K1HA 2Y3MA 1WVNA 4LIJA 4LF8H 1N32H 4H8AA 2CPMA 3T1YH 2QNDA 1XMQH 2ANRA 5K36G 2HHHH 4LFCH 2Z0SA 2JZXA 4JVYA 2LF0A 4YHHH 2HH3A 5LMNH 3J80W 5BR8H 2O4CA 1J5EH
chains in the Genus database with same CATH topology
1TUAA 1WE8A 2CTEA 2E3UA 4QMFB 5C0XG 2CTKA 1ZZIA 2PQUA 3AEVB 1VIHA 4WANA 2AXYA 1X4MA 1ZTGA 1EC6A 4BA2I 2MJHA 2P2RA 2JVZA 2CTLA 2CTFA 2JEBI 2YQRA 1K1GA 2ANNA 2OPUA 4WALA 2JEAI 4JVHA 4AM3A 1ZZJA 2CTJA 3VKEA 2HH3A 1X4NA 2CPQA 2JE6I 4NBQA 3V69A 1J5KA 2BL5A 2OPVA 3L7ZC 4IFDG 1WVNA 4LIJA 4OO1G 2PY9A 2ANRA 2JA9A 2QNDA 1KHMA 2HH2A 5K36G 2FMRA 2CTMA 2NN6G 1J4WA 2BA0A 2Z0SA 2JZXA 5JEAG 4BA1I 4AIMA 1DTJA 1ZZKA 1VIGA 2DGRA 4B8TA 4JVYA 1DT4A 3U1KA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TUA A;  1WE8 A;  2CTE A;  2E3U A;  4QMF B;  5C0X G;  2CTK A;  1ZZI A;  2PQU A;  3AEV B;  1VIH A;  4WAN A;  2AXY A;  1X4M A;  1ZTG A;  1EC6 A;  4BA2 I;  2MJH A;  2P2R A;  2JVZ A;  2CTL A;  2CTF A;  2JEB I;  2YQR A;  1K1G A;  2ANN A;  2OPU A;  4WAL A;  2JEA I;  4JVH A;  4AM3 A;  1ZZJ A;  2CTJ A;  3VKE A;  2HH3 A;  1X4N A;  2CPQ A;  2JE6 I;  4NBQ A;  3V69 A;  1J5K A;  2BL5 A;  2OPV A;  3L7Z C;  4IFD G;  1WVN A;  4LIJ A;  4OO1 G;  2PY9 A;  2ANR A;  2JA9 A;  2QND A;  1KHM A;  2HH2 A;  5K36 G;  2FMR A;  2CTM A;  2NN6 G;  1J4W A;  2BA0 A;  2Z0S A;  2JZX A;  5JEA G;  4BA1 I;  4AIM A;  1DTJ A;  1ZZK A;  1VIG A;  2DGR A;  4B8T A;  4JVY A;  1DT4 A;  3U1K A; 
#chains in the Genus database with same CATH topology
 2ZM6 H;  1WE8 A;  4FJU A;  5IT9 W;  4DR6 H;  1ZZI A;  2PQU A;  3AEV B;  2UXC H;  5LL6 b;  2D9I A;  4OCH A;  4X66 H;  4JI7 H;  1F0X A;  1FJG H;  2JVZ A;  1NXU A;  4LFB H;  4JI0 H;  2OPU A;  4LF6 H;  1IBM H;  4LFA H;  1ZZJ A;  2CTJ A;  1XMO H;  1XNQ H;  1XRH A;  4EC5 A;  3T1H H;  4DR5 H;  4IFD G;  3GKU A;  1VBI A;  1HNX H;  3J7A K;  3GR5 A;  4JI6 H;  2HH2 A;  2FMR A;  1N33 H;  1J4W A;  2UUC H;  1UG8 A;  2VQF H;  4BA1 I;  3EZJ A;  1DTJ A;  4JI8 H;  4X62 H;  2F4V H;  4JI4 H;  2E5L H;  2VKC A;  2LRR A;  3SB1 A;  2CTE A;  4B3R H;  2E3U A;  4QMF B;  4JYA H;  4K0K H;  3OTO H;  4DR2 H;  2UXB H;  3I0P A;  2UUA H;  2AXY A;  1IBL H;  1SEI A;  4DR7 H;  4GKJ H;  1X9Z A;  1ZTG A;  3J81 W;  4JI2 H;  1K1G A;  1PQX A;  1Z2I A;  2PT7 G;  2ANN A;  4AQY H;  3KDG A;  3VKE A;  2LTM A;  2G8Y A;  1FKA H;  2JE6 I;  3V69 A;  1WHR A;  3NCV A;  4X64 H;  1I6U A;  5DT9 A;  4E9J A;  3FAU A;  4DV7 H;  4LF4 H;  1X0A A;  2CWF A;  4DR1 H;  1HR0 H;  4B3S H;  4JI1 H;  2JA9 A;  1ODH A;  2CTM A;  4B3T H;  2BA0 A;  4JV5 H;  2M8W A;  4OD6 A;  4AIM A;  1VIG A;  4B8C D;  4B8T A;  2UUB H;  1DT4 A;  3GAB A;  3U1K A;  1I94 H;  4B3M H;  4JI5 H;  1HNW H;  4DUY H;  4OX9 H;  2UU9 H;  5IWA H;  2CTK A;  4DV6 H;  1VIH A;  4DV4 H;  4LF5 H;  1X4M A;  4G08 A;  1MSZ A;  2M6Q A;  2CTF A;  2YQR A;  1KHM A;  1N34 H;  2LTL A;  2JEA I;  3OET A;  5FLX W;  1S20 A;  3RF2 A;  1IBK H;  1X4N A;  3QD7 X;  4NBQ A;  1HNZ H;  3JAM W;  4LF9 H;  2OPV A;  1V9N A;  3L7Z C;  4FJS A;  4NXM H;  4NXN H;  4DV3 H;  4DV0 H;  2ZQE A;  4OO1 G;  2PY9 A;  1WTJ A;  4JI3 H;  1N36 H;  5LMU H;  2FFM A;  2NN6 G;  4WAL A;  3OSS D;  4NZR M;  2A1S A;  5JEA G;  4NZT M;  2VQE H;  1ZZK A;  1XNR H;  2DGR A;  4LF7 H;  2CWH A;  1TUA A;  3UOE A;  5C0X G;  4DV1 H;  4X65 H;  3KDK A;  4GKK H;  4WAN A;  2FPH X;  2UXD H;  4DR3 H;  1EC6 A;  4BA2 I;  1S03 G;  4DV5 H;  2MJH A;  2P2R A;  2CTL A;  2JEB I;  4DV2 H;  4JVH A;  4AM3 A;  4KHP H;  4DUZ H;  4DR4 H;  1V8C A;  2X06 A;  2CPQ A;  5A2Q W;  1J5K A;  4PDB A;  2BL5 A;  4YY3 H;  1AN7 A;  2K1H A;  2Y3M A;  1WVN A;  4LIJ A;  4LF8 H;  1N32 H;  4H8A A;  2CPM A;  3T1Y H;  2QND A;  1XMQ H;  2ANR A;  5K36 G;  2HHH H;  4LFC H;  2Z0S A;  2JZX A;  4JVY A;  2LF0 A;  4YHH H;  2HH3 A;  5LMN H;  3J80 W;  5BR8 H;  2O4C A;  1J5E H; 
#chains in the Genus database with same CATH homology
 1TUA A;  1WE8 A;  2CTE A;  2E3U A;  4QMF B;  5C0X G;  2CTK A;  1ZZI A;  2PQU A;  3AEV B;  1VIH A;  4WAN A;  2AXY A;  1X4M A;  1ZTG A;  1EC6 A;  4BA2 I;  2MJH A;  2P2R A;  2JVZ A;  2CTL A;  2CTF A;  2JEB I;  2YQR A;  1K1G A;  2ANN A;  2OPU A;  4WAL A;  2JEA I;  4JVH A;  4AM3 A;  1ZZJ A;  2CTJ A;  3VKE A;  2HH3 A;  1X4N A;  2CPQ A;  2JE6 I;  4NBQ A;  3V69 A;  1J5K A;  2BL5 A;  2OPV A;  3L7Z C;  4IFD G;  1WVN A;  4LIJ A;  4OO1 G;  2PY9 A;  2ANR A;  2JA9 A;  2QND A;  1KHM A;  2HH2 A;  5K36 G;  2FMR A;  2CTM A;  2NN6 G;  1J4W A;  2BA0 A;  2Z0S A;  2JZX A;  5JEA G;  4BA1 I;  4AIM A;  1DTJ A;  1ZZK A;  1VIG A;  2DGR A;  4B8T A;  4JVY A;  1DT4 A;  3U1K A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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