2JZXA

Pcbp2 kh1-kh2 domains
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
160
structure length
160
Chain Sequence
KNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLET
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Poly(rC)-binding protein 2
publication title Structure of the first and second KH domains of human poly-C binding protein-2 reveals insights into its regulatory mechanisms
rcsb
source organism Homo sapiens
molecule tags Rna binding protein
total genus 40
structure length 160
sequence length 160
ec nomenclature
pdb deposition date 2008-01-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00013 KH_1 KH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 2jzxA01
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 2jzxA02
3L7ZC 2CTLA 2CTJA 4JVHA 1X4NA 2PQUA 1TUAA 1J5KA 2FMRA 4AIMA 4AM3A 2DGRA 2ANNA 2JZXA 1EC6A 4LIJA 3U1KA 1J4WA 4OO1G 5K36G 4NBQA 5C0XG 2YQRA 2NN6G 4IFDG 1ZZKA 1VIHA 1DT4A 2CTKA 4BA1I 1WE8A 1DTJA 1ZTGA 2CTEA 2ANRA 2MJHA 2PY9A 1ZZJA 4B8TA 2JE6I 4WANA 2JVZA 2JEBI 4QMFB 3AEVB 2CTMA 2OPVA 2QNDA 2JEAI 1K1GA 2OPUA 2JA9A 4BA2I 1WVNA 1VIGA 1KHMA 2CPQA 2CTFA 4WALA 3VKEA 2AXYA 2P2RA 2HH2A 3V69A 5JEAG 2Z0SA 1X4MA 2HH3A 1ZZIA 2E3UA 4JVYA 2BA0A 2BL5A
chains in the Genus database with same CATH superfamily
2LRRA 2PT7G 1TUAA 1WTJA 4DV0H 1J5KA 2LTMA 4JI6H 3OTOH 2JZXA 4JI1H 1EC6A 2Y3MA 4JI0H 4JYAH 4B3RH 4X64H 4K0KH 5C0XG 1XMOH 3JAMW 4AQYH 5DT9A 1AN7A 1XNQH 3QD7X 1PQXA 1VIHA 4DV3H 1FKAH 1ZTGA 2MJHA 1XMQH 4E9JA 3GR5A 4DV4H 1V9NA 2JEAI 3GKUA 2ZQEA 4LF8H 2UUBH 4OCHA 4LFCH 3RF2A 2CPQA 4BA2I 2HHHH 5BR8H 4WALA 2LTLA 3KDGA 1HNZH 1IBMH 4DV1H 3OETA 2HH2A 4JI5H 1IBLH 4NXNH 2UXBH 2BA0A 3KDKA 3L7ZC 2VKCA 2CTLA 4B8CD 4JI3H 1X4NA 2PQUA 4LFAH 4GKKH 4DR7H 1N32H 4AIMA 4AM3A 5K36G 2ANNA 4X62H 4LIJA 2G8YA 3EZJA 1J4WA 1I6UA 1SEIA 4GKJH 4JV5H 4NZTM 1ODHA 4B3SH 5IT9W 5LMUH 4WANA 4LF7H 2JE6I 1V8CA 2JVZA 1HNWH 5FLXW 1FJGH 4PDBA 2CTMA 3GABA 2F4VH 2OPVA 2QNDA 4NZRM 4EC5A 1K1GA 1N33H 3I0PA 2JA9A 2UXDH 1KHMA 1WHRA 4LFBH 5IWAH 3OSSD 2AXYA 2Z0SA 1Z2IA 2HH3A 2M6QA 2K1HA 4JVYA 4FJUA 4DR4H 4LF4H 4JVHA 2CWFA 2FMRA 2VQFH 4LF5H 1XNRH 2UXCH 3J80W 1X9ZA 2UU9H 4OO1G 3U1KA 4DUZH 4B3TH 2FPHX 3UOEA 2NN6G 2D9IA 4NXMH 5LL6b 5A2QW 1ZZKA 1IBKH 1DT4A 2CTEA 1X0AA 2ZM6H 4DV2H 1ZZJA 4B8TA 2UUCH 4QMFB 3AEVB 4H8AA 4DR2H 2A1SA 4OD6A 3J81W 3SB1A 2OPUA 4JI2H 2LF0A 4X65H 1WVNA 1VIGA 4OX9H 4DV7H 4DR3H 1N36H 3T1HH 4JI4H 1VBIA 3VKEA 4DR5H 4DUYH 2E5LH 2X06A 4FJSA 4KHPH 5LMNH 4DV5H 1MSZA 4JI8H 2BL5A 4DV6H 2CTJA 4LF9H 1S03G 4DR6H 1NXUA 4YHHH 1S20A 1UG8A 4G08A 2VQEH 4DR1H 3FAUA 2DGRA 2CPMA 4NBQA 2CWHA 1XRHA 2YQRA 1F0XA 4X66H 3T1YH 1J5EH 4IFDG 2CTKA 2PY9A 4BA1I 1WE8A 1DTJA 2ANRA 3J7AK 1N34H 1I94H 2JEBI 3NCVA 4JI7H 2FFMA 1HR0H 2CTFA 4LF6H 2UUAH 2P2RA 3V69A 4YY3H 5JEAG 4B3MH 1X4MA 1HNXH 1ZZIA 2E3UA 2M8WA 2O4CA
chains in the Genus database with same CATH topology
3L7ZC 2CTLA 2CTJA 4JVHA 1X4NA 2PQUA 1TUAA 1J5KA 2FMRA 4AIMA 4AM3A 2DGRA 2ANNA 2JZXA 1EC6A 4LIJA 3U1KA 1J4WA 4OO1G 5K36G 4NBQA 5C0XG 2YQRA 2NN6G 4IFDG 1ZZKA 1VIHA 1DT4A 2CTKA 4BA1I 1WE8A 1DTJA 1ZTGA 2CTEA 2ANRA 2MJHA 2PY9A 1ZZJA 4B8TA 2JE6I 4WANA 2JVZA 2JEBI 4QMFB 3AEVB 2CTMA 2OPVA 2QNDA 2JEAI 1K1GA 2OPUA 2JA9A 4BA2I 1WVNA 1VIGA 1KHMA 2CPQA 2CTFA 4WALA 3VKEA 2AXYA 2P2RA 2HH2A 3V69A 5JEAG 2Z0SA 1X4MA 2HH3A 1ZZIA 2E3UA 4JVYA 2BA0A 2BL5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3L7Z C;  2CTL A;  2CTJ A;  4JVH A;  1X4N A;  2PQU A;  1TUA A;  1J5K A;  2FMR A;  4AIM A;  4AM3 A;  2DGR A;  2ANN A;  2JZX A;  1EC6 A;  4LIJ A;  3U1K A;  1J4W A;  4OO1 G;  5K36 G;  4NBQ A;  5C0X G;  2YQR A;  2NN6 G;  4IFD G;  1ZZK A;  1VIH A;  1DT4 A;  2CTK A;  4BA1 I;  1WE8 A;  1DTJ A;  1ZTG A;  2CTE A;  2ANR A;  2MJH A;  2PY9 A;  1ZZJ A;  4B8T A;  2JE6 I;  4WAN A;  2JVZ A;  2JEB I;  4QMF B;  3AEV B;  2CTM A;  2OPV A;  2QND A;  2JEA I;  1K1G A;  2OPU A;  2JA9 A;  4BA2 I;  1WVN A;  1VIG A;  1KHM A;  2CPQ A;  2CTF A;  4WAL A;  3VKE A;  2AXY A;  2P2R A;  2HH2 A;  3V69 A;  5JEA G;  2Z0S A;  1X4M A;  2HH3 A;  1ZZI A;  2E3U A;  4JVY A;  2BA0 A;  2BL5 A; 
#chains in the Genus database with same CATH topology
 2LRR A;  2PT7 G;  1TUA A;  1WTJ A;  4DV0 H;  1J5K A;  2LTM A;  4JI6 H;  3OTO H;  2JZX A;  4JI1 H;  1EC6 A;  2Y3M A;  4JI0 H;  4JYA H;  4B3R H;  4X64 H;  4K0K H;  5C0X G;  1XMO H;  3JAM W;  4AQY H;  5DT9 A;  1AN7 A;  1XNQ H;  3QD7 X;  1PQX A;  1VIH A;  4DV3 H;  1FKA H;  1ZTG A;  2MJH A;  1XMQ H;  4E9J A;  3GR5 A;  4DV4 H;  1V9N A;  2JEA I;  3GKU A;  2ZQE A;  4LF8 H;  2UUB H;  4OCH A;  4LFC H;  3RF2 A;  2CPQ A;  4BA2 I;  2HHH H;  5BR8 H;  4WAL A;  2LTL A;  3KDG A;  1HNZ H;  1IBM H;  4DV1 H;  3OET A;  2HH2 A;  4JI5 H;  1IBL H;  4NXN H;  2UXB H;  2BA0 A;  3KDK A;  3L7Z C;  2VKC A;  2CTL A;  4B8C D;  4JI3 H;  1X4N A;  2PQU A;  4LFA H;  4GKK H;  4DR7 H;  1N32 H;  4AIM A;  4AM3 A;  5K36 G;  2ANN A;  4X62 H;  4LIJ A;  2G8Y A;  3EZJ A;  1J4W A;  1I6U A;  1SEI A;  4GKJ H;  4JV5 H;  4NZT M;  1ODH A;  4B3S H;  5IT9 W;  5LMU H;  4WAN A;  4LF7 H;  2JE6 I;  1V8C A;  2JVZ A;  1HNW H;  5FLX W;  1FJG H;  4PDB A;  2CTM A;  3GAB A;  2F4V H;  2OPV A;  2QND A;  4NZR M;  4EC5 A;  1K1G A;  1N33 H;  3I0P A;  2JA9 A;  2UXD H;  1KHM A;  1WHR A;  4LFB H;  5IWA H;  3OSS D;  2AXY A;  2Z0S A;  1Z2I A;  2HH3 A;  2M6Q A;  2K1H A;  4JVY A;  4FJU A;  4DR4 H;  4LF4 H;  4JVH A;  2CWF A;  2FMR A;  2VQF H;  4LF5 H;  1XNR H;  2UXC H;  3J80 W;  1X9Z A;  2UU9 H;  4OO1 G;  3U1K A;  4DUZ H;  4B3T H;  2FPH X;  3UOE A;  2NN6 G;  2D9I A;  4NXM H;  5LL6 b;  5A2Q W;  1ZZK A;  1IBK H;  1DT4 A;  2CTE A;  1X0A A;  2ZM6 H;  4DV2 H;  1ZZJ A;  4B8T A;  2UUC H;  4QMF B;  3AEV B;  4H8A A;  4DR2 H;  2A1S A;  4OD6 A;  3J81 W;  3SB1 A;  2OPU A;  4JI2 H;  2LF0 A;  4X65 H;  1WVN A;  1VIG A;  4OX9 H;  4DV7 H;  4DR3 H;  1N36 H;  3T1H H;  4JI4 H;  1VBI A;  3VKE A;  4DR5 H;  4DUY H;  2E5L H;  2X06 A;  4FJS A;  4KHP H;  5LMN H;  4DV5 H;  1MSZ A;  4JI8 H;  2BL5 A;  4DV6 H;  2CTJ A;  4LF9 H;  1S03 G;  4DR6 H;  1NXU A;  4YHH H;  1S20 A;  1UG8 A;  4G08 A;  2VQE H;  4DR1 H;  3FAU A;  2DGR A;  2CPM A;  4NBQ A;  2CWH A;  1XRH A;  2YQR A;  1F0X A;  4X66 H;  3T1Y H;  1J5E H;  4IFD G;  2CTK A;  2PY9 A;  4BA1 I;  1WE8 A;  1DTJ A;  2ANR A;  3J7A K;  1N34 H;  1I94 H;  2JEB I;  3NCV A;  4JI7 H;  2FFM A;  1HR0 H;  2CTF A;  4LF6 H;  2UUA H;  2P2R A;  3V69 A;  4YY3 H;  5JEA G;  4B3M H;  1X4M A;  1HNX H;  1ZZI A;  2E3U A;  2M8W A;  2O4C A; 
#chains in the Genus database with same CATH homology
 3L7Z C;  2CTL A;  2CTJ A;  4JVH A;  1X4N A;  2PQU A;  1TUA A;  1J5K A;  2FMR A;  4AIM A;  4AM3 A;  2DGR A;  2ANN A;  2JZX A;  1EC6 A;  4LIJ A;  3U1K A;  1J4W A;  4OO1 G;  5K36 G;  4NBQ A;  5C0X G;  2YQR A;  2NN6 G;  4IFD G;  1ZZK A;  1VIH A;  1DT4 A;  2CTK A;  4BA1 I;  1WE8 A;  1DTJ A;  1ZTG A;  2CTE A;  2ANR A;  2MJH A;  2PY9 A;  1ZZJ A;  4B8T A;  2JE6 I;  4WAN A;  2JVZ A;  2JEB I;  4QMF B;  3AEV B;  2CTM A;  2OPV A;  2QND A;  2JEA I;  1K1G A;  2OPU A;  2JA9 A;  4BA2 I;  1WVN A;  1VIG A;  1KHM A;  2CPQ A;  2CTF A;  4WAL A;  3VKE A;  2AXY A;  2P2R A;  2HH2 A;  3V69 A;  5JEA G;  2Z0S A;  1X4M A;  2HH3 A;  1ZZI A;  2E3U A;  4JVY A;  2BA0 A;  2BL5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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