2JZXA

Pcbp2 kh1-kh2 domains
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
160
structure length
160
Chain Sequence
KNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLET
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of the first and second KH domains of human poly-C binding protein-2 reveals insights into its regulatory mechanisms
rcsb
source organism Homo sapiens
molecule tags Rna binding protein
molecule keywords Poly(rC)-binding protein 2
total genus 40
structure length 160
sequence length 160
ec nomenclature
pdb deposition date 2008-01-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00013 KH_1 KH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 2jzxA01
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 2jzxA02
1X4MA 1VIHA 2JA9A 4OO1G 1J4WA 4AIMA 2PQUA 1DT4A 4B8TA 2ANRA 2AXYA 4IFDG 1X4NA 1DTJA 2OPUA 2BL5A 2QNDA 1ZTGA 4BA2I 2JEBI 1ZZIA 4LIJA 4BA1I 4JVYA 5K36G 4NBQA 3AEVB 3U1KA 1ZZJA 2JZXA 2OPVA 2ANNA 3L7ZC 4WALA 2YQRA 2MJHA 2P2RA 2FMRA 2JVZA 2BA0A 2CTFA 2CTJA 2HH3A 1EC6A 1TUAA 1WE8A 2JE6I 1WVNA 2NN6G 2Z0SA 5JEAG 1K1GA 2E3UA 1KHMA 2CTEA 2DGRA 2CTKA 3V69A 4AM3A 4WANA 2PY9A 2CTLA 1ZZKA 5C0XG 2CTMA 2JEAI 4JVHA 2CPQA 4QMFB 1J5KA 2HH2A 3VKEA 1VIGA
chains in the Genus database with same CATH superfamily
2UU9H 1VIHA 2F4VH 3OSSD 4DR5H 1X0AA 2PQUA 4JI7H 5K36G 4DR4H 4DV5H 1F0XA 4DR1H 1UG8A 2VQEH 3QD7X 4JI2H 3FAUA 4B3TH 2UXCH 1MSZA 1XMQH 3AEVB 2JZXA 2OPVA 4H8AA 3EZJA 2LRRA 1NXUA 3KDGA 2ZQEA 2YQRA 4GKKH 4X64H 2CTJA 1TUAA 2NN6G 2Z0SA 1WHRA 5JEAG 2K1HA 2CTEA 4YHHH 1FKAH 2VQFH 2CTLA 3I0PA 2X06A 3J80W 4JVHA 4FJSA 4LFCH 2HH2A 1N33H 1HNXH 4DV3H 4DV6H 1J4WA 4OO1G 4B8CD 4E9JA 1HNWH 1I94H 3J81W 4B8TA 2AXYA 2ANRA 2OPUA 1DTJA 2QNDA 5DT9A 1IBLH 1ZTGA 4JI5H 2UUCH 4LF7H 4LF9H 2PT7G 5IWAH 2CPMA 4DR7H 1WTJA 4BA1I 2UXBH 4EC5A 2LF0A 1ZZJA 4DUZH 4DV4H 1N36H 4LFAH 1IBMH 3T1YH 3L7ZC 5BR8H 2MJHA 4JI6H 2P2RA 2FMRA 2JVZA 1IBKH 4B3SH 2CTFA 4LF5H 2JE6I 3GR5A 4BA2I 1Z2IA 2CTKA 1XMOH 4JI1H 2UXDH 1ZZKA 5C0XG 2CTMA 4DV2H 4PDBA 1J5KA 4JI4H 5A2QW 1ODHA 1X4MA 2FPHX 4NZTM 4G08A 4JYAH 1DT4A 4FJUA 1V9NA 1X4NA 2HHHH 4JI8H 1SEIA 2BL5A 4LF4H 1PQXA 2A1SA 4LIJA 4JVYA 4GKJH 4X65H 3U1KA 4NZRM 5LMNH 4LF8H 2VKCA 5IT9W 2LTMA 2ANNA 4B3MH 4IFDG 2UUAH 4WALA 1HNZH 1N32H 1XRHA 3KDKA 2HH3A 2FFMA 1FJGH 1WE8A 4DV0H 4DR2H 4DR3H 4JI0H 1K1GA 2E3UA 4OX9H 4JV5H 1KHMA 3UOEA 3V69A 4X62H 4AQYH 4JI3H 4X66H 2E5LH 2G8YA 3RF2A 4QMFB 3VKEA 2M8WA 2JA9A 1X9ZA 4OD6A 5LL6b 4AIMA 4DR6H 4NXNH 2D9IA 4DV1H 4DV7H 3T1HH 2CWFA 4YY3H 2JEBI 2Y3MA 1ZZIA 3J7AK 4DUYH 3GKUA 4NBQA 1HR0H 4KHPH 3GABA 1XNRH 4LFBH 1S20A 4NXMH 3JAMW 1I6UA 2O4CA 1S03G 2BA0A 1EC6A 4B3RH 3NCVA 1WVNA 4K0KH 2LTLA 2M6QA 5LMUH 1J5EH 2DGRA 4AM3A 1XNQH 3OETA 1N34H 4LF6H 2PY9A 2CWHA 2JEAI 1VBIA 2CPQA 5FLXW 3SB1A 3OTOH 2UUBH 2ZM6H 4WANA 1AN7A 4OCHA 1V8CA 1VIGA
chains in the Genus database with same CATH topology
1X4MA 1VIHA 2JA9A 4OO1G 1J4WA 4AIMA 2PQUA 1DT4A 4B8TA 2ANRA 2AXYA 4IFDG 1X4NA 1DTJA 2OPUA 2BL5A 2QNDA 1ZTGA 4BA2I 2JEBI 1ZZIA 4LIJA 4BA1I 4JVYA 5K36G 4NBQA 3AEVB 3U1KA 1ZZJA 2JZXA 2OPVA 2ANNA 3L7ZC 4WALA 2YQRA 2MJHA 2P2RA 2FMRA 2JVZA 2BA0A 2CTFA 2CTJA 2HH3A 1EC6A 1TUAA 1WE8A 2JE6I 1WVNA 2NN6G 2Z0SA 5JEAG 1K1GA 2E3UA 1KHMA 2CTEA 2DGRA 2CTKA 3V69A 4AM3A 4WANA 2PY9A 2CTLA 1ZZKA 5C0XG 2CTMA 2JEAI 4JVHA 2CPQA 4QMFB 1J5KA 2HH2A 3VKEA 1VIGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1X4M A;  1VIH A;  2JA9 A;  4OO1 G;  1J4W A;  4AIM A;  2PQU A;  1DT4 A;  4B8T A;  2ANR A;  2AXY A;  4IFD G;  1X4N A;  1DTJ A;  2OPU A;  2BL5 A;  2QND A;  1ZTG A;  4BA2 I;  2JEB I;  1ZZI A;  4LIJ A;  4BA1 I;  4JVY A;  5K36 G;  4NBQ A;  3AEV B;  3U1K A;  1ZZJ A;  2JZX A;  2OPV A;  2ANN A;  3L7Z C;  4WAL A;  2YQR A;  2MJH A;  2P2R A;  2FMR A;  2JVZ A;  2BA0 A;  2CTF A;  2CTJ A;  2HH3 A;  1EC6 A;  1TUA A;  1WE8 A;  2JE6 I;  1WVN A;  2NN6 G;  2Z0S A;  5JEA G;  1K1G A;  2E3U A;  1KHM A;  2CTE A;  2DGR A;  2CTK A;  3V69 A;  4AM3 A;  4WAN A;  2PY9 A;  2CTL A;  1ZZK A;  5C0X G;  2CTM A;  2JEA I;  4JVH A;  2CPQ A;  4QMF B;  1J5K A;  2HH2 A;  3VKE A;  1VIG A; 
#chains in the Genus database with same CATH topology
 2UU9 H;  1VIH A;  2F4V H;  3OSS D;  4DR5 H;  1X0A A;  2PQU A;  4JI7 H;  5K36 G;  4DR4 H;  4DV5 H;  1F0X A;  4DR1 H;  1UG8 A;  2VQE H;  3QD7 X;  4JI2 H;  3FAU A;  4B3T H;  2UXC H;  1MSZ A;  1XMQ H;  3AEV B;  2JZX A;  2OPV A;  4H8A A;  3EZJ A;  2LRR A;  1NXU A;  3KDG A;  2ZQE A;  2YQR A;  4GKK H;  4X64 H;  2CTJ A;  1TUA A;  2NN6 G;  2Z0S A;  1WHR A;  5JEA G;  2K1H A;  2CTE A;  4YHH H;  1FKA H;  2VQF H;  2CTL A;  3I0P A;  2X06 A;  3J80 W;  4JVH A;  4FJS A;  4LFC H;  2HH2 A;  1N33 H;  1HNX H;  4DV3 H;  4DV6 H;  1J4W A;  4OO1 G;  4B8C D;  4E9J A;  1HNW H;  1I94 H;  3J81 W;  4B8T A;  2AXY A;  2ANR A;  2OPU A;  1DTJ A;  2QND A;  5DT9 A;  1IBL H;  1ZTG A;  4JI5 H;  2UUC H;  4LF7 H;  4LF9 H;  2PT7 G;  5IWA H;  2CPM A;  4DR7 H;  1WTJ A;  4BA1 I;  2UXB H;  4EC5 A;  2LF0 A;  1ZZJ A;  4DUZ H;  4DV4 H;  1N36 H;  4LFA H;  1IBM H;  3T1Y H;  3L7Z C;  5BR8 H;  2MJH A;  4JI6 H;  2P2R A;  2FMR A;  2JVZ A;  1IBK H;  4B3S H;  2CTF A;  4LF5 H;  2JE6 I;  3GR5 A;  4BA2 I;  1Z2I A;  2CTK A;  1XMO H;  4JI1 H;  2UXD H;  1ZZK A;  5C0X G;  2CTM A;  4DV2 H;  4PDB A;  1J5K A;  4JI4 H;  5A2Q W;  1ODH A;  1X4M A;  2FPH X;  4NZT M;  4G08 A;  4JYA H;  1DT4 A;  4FJU A;  1V9N A;  1X4N A;  2HHH H;  4JI8 H;  1SEI A;  2BL5 A;  4LF4 H;  1PQX A;  2A1S A;  4LIJ A;  4JVY A;  4GKJ H;  4X65 H;  3U1K A;  4NZR M;  5LMN H;  4LF8 H;  2VKC A;  5IT9 W;  2LTM A;  2ANN A;  4B3M H;  4IFD G;  2UUA H;  4WAL A;  1HNZ H;  1N32 H;  1XRH A;  3KDK A;  2HH3 A;  2FFM A;  1FJG H;  1WE8 A;  4DV0 H;  4DR2 H;  4DR3 H;  4JI0 H;  1K1G A;  2E3U A;  4OX9 H;  4JV5 H;  1KHM A;  3UOE A;  3V69 A;  4X62 H;  4AQY H;  4JI3 H;  4X66 H;  2E5L H;  2G8Y A;  3RF2 A;  4QMF B;  3VKE A;  2M8W A;  2JA9 A;  1X9Z A;  4OD6 A;  5LL6 b;  4AIM A;  4DR6 H;  4NXN H;  2D9I A;  4DV1 H;  4DV7 H;  3T1H H;  2CWF A;  4YY3 H;  2JEB I;  2Y3M A;  1ZZI A;  3J7A K;  4DUY H;  3GKU A;  4NBQ A;  1HR0 H;  4KHP H;  3GAB A;  1XNR H;  4LFB H;  1S20 A;  4NXM H;  3JAM W;  1I6U A;  2O4C A;  1S03 G;  2BA0 A;  1EC6 A;  4B3R H;  3NCV A;  1WVN A;  4K0K H;  2LTL A;  2M6Q A;  5LMU H;  1J5E H;  2DGR A;  4AM3 A;  1XNQ H;  3OET A;  1N34 H;  4LF6 H;  2PY9 A;  2CWH A;  2JEA I;  1VBI A;  2CPQ A;  5FLX W;  3SB1 A;  3OTO H;  2UUB H;  2ZM6 H;  4WAN A;  1AN7 A;  4OCH A;  1V8C A;  1VIG A; 
#chains in the Genus database with same CATH homology
 1X4M A;  1VIH A;  2JA9 A;  4OO1 G;  1J4W A;  4AIM A;  2PQU A;  1DT4 A;  4B8T A;  2ANR A;  2AXY A;  4IFD G;  1X4N A;  1DTJ A;  2OPU A;  2BL5 A;  2QND A;  1ZTG A;  4BA2 I;  2JEB I;  1ZZI A;  4LIJ A;  4BA1 I;  4JVY A;  5K36 G;  4NBQ A;  3AEV B;  3U1K A;  1ZZJ A;  2JZX A;  2OPV A;  2ANN A;  3L7Z C;  4WAL A;  2YQR A;  2MJH A;  2P2R A;  2FMR A;  2JVZ A;  2BA0 A;  2CTF A;  2CTJ A;  2HH3 A;  1EC6 A;  1TUA A;  1WE8 A;  2JE6 I;  1WVN A;  2NN6 G;  2Z0S A;  5JEA G;  1K1G A;  2E3U A;  1KHM A;  2CTE A;  2DGR A;  2CTK A;  3V69 A;  4AM3 A;  4WAN A;  2PY9 A;  2CTL A;  1ZZK A;  5C0X G;  2CTM A;  2JEA I;  4JVH A;  2CPQ A;  4QMF B;  1J5K A;  2HH2 A;  3VKE A;  1VIG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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