2CPMA

Solution structure of the r3h domain of human sperm-associated antigen 7
Total Genus 16
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
94
structure length
94
Chain Sequence
GSSGSSGQKVEFRKRMEKEVSDFIQDSGQIKKKFQPMNKIERSILHDVVEVAGLTSFSFGEDDDCRYVMIFKKEFAPSDEELDSYRRGSGPSSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords Sperm-associated antigen 7
publication title Solution structure of the R3H domain of human sperm-associated antigen 7
rcsb
source organism Homo sapiens
total genus 16
structure length 94
sequence length 94
ec nomenclature
pdb deposition date 2005-05-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01424 R3H R3H domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.50 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 R3H-like domain 2cpmA00
2LRRA 1WHRA 2A1SA 1UG8A 1MSZA 3GKUA 2CPMA
chains in the Genus database with same CATH superfamily
4GKJH 2JEBI 2OPVA 3QD7X 4NBQA 1V8CA 2CTJA 2M6QA 4DV5H 1J5KA 2CTEA 2X06A 2QNDA 3OTOH 1MSZA 2AXYA 4DR5H 2E3UA 3KDGA 5BR8H 5IT9W 4DV1H 2Y3MA 4OD6A 4E9JA 2VKCA 3J7AK 2LTLA 1VBIA 1ZZKA 4YY3H 4LFAH 1WE8A 2FMRA 4FJUA 2PQUA 2HH2A 5A2QW 4JI7H 4X62H 4LF9H 4LF8H 1J4WA 2Z0SA 1DTJA 1Z2IA 3UOEA 4B3MH 1EC6A 4JI2H 4NXNH 4FJSA 4JI8H 1I94H 2CTKA 4WALA 3GABA 3T1HH 1N34H 2DGRA 2E5LH 4LF6H 1FJGH 4LFCH 1HNXH 1XMQH 2LF0A 1IBKH 4LF4H 4DV3H 4JVYA 1N36H 4AM3A 4DV4H 1IBMH 2JZXA 2M8WA 4JI6H 2LTMA 1IBLH 4GKKH 4KHPH 2VQEH 2UXCH 3JAMW 1I6UA 1WVNA 2ANRA 4OO1G 4DV0H 2CWHA 2ZQEA 1ZZJA 1XNQH 1PQXA 1V9NA 4B8CD 4EC5A 1X4NA 2ANNA 1WHRA 4JI3H 4QMFB 4AIMA 1KHMA 2HHHH 1VIGA 2NN6G 2K1HA 2UXBH 2FFMA 4DR4H 3NCVA 2ZM6H 4BA2I 2PY9A 4DR6H 2D9IA 1S20A 1S03G 1DT4A 2BA0A 4LIJA 5JEAG 2OPUA 2CPMA 4JYAH 3J81W 1N33H 4B3RH 4H8AA 5DT9A 1ODHA 1HNZH 4WANA 3I0PA 4JV5H 3KDKA 5IWAH 4X64H 5FLXW 4LF7H 2CTMA 2G8YA 1HNWH 4NZRM 4JI5H 2UUCH 4JVHA 2LRRA 1NXUA 4G08A 4DUYH 2VQFH 4DR2H 1XMOH 4DR3H 4IFDG 5LMUH 3RF2A 2UUBH 4PDBA 5LL6b 4B3SH 2CPQA 2JA9A 3J80W 2PT7G 1X0AA 4BA1I 1TUAA 2MJHA 3OSSD 1XRHA 4B3TH 2P2RA 4YHHH 1HR0H 4NZTM 1AN7A 4DUZH 1ZTGA 1X4MA 2HH3A 2JEAI 2FPHX 4OCHA 4NXMH 1FKAH 1ZZIA 3OETA 2UU9H 4JI1H 5LMNH 3VKEA 4OX9H 4DV6H 2UXDH 3AEVB 4X66H 2UUAH 3U1KA 4DR1H 4B8TA 1F0XA 3T1YH 4JI4H 2F4VH 1SEIA 1X9ZA 2JVZA 2BL5A 2YQRA 4DV2H 1VIHA 3GR5A 5C0XG 3SB1A 1UG8A 2CWFA 3L7ZC 4DV7H 4JI0H 1XNRH 1K1GA 2JE6I 4LF5H 4LFBH 4DR7H 2A1SA 5K36G 1J5EH 2CTLA 4K0KH 3EZJA 1N32H 1WTJA 4X65H 2O4CA 3GKUA 3V69A 2CTFA 3FAUA 4AQYH
chains in the Genus database with same CATH topology
2LRRA 1WHRA 2A1SA 1UG8A 1MSZA 3GKUA 2CPMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LRR A;  1WHR A;  2A1S A;  1UG8 A;  1MSZ A;  3GKU A;  2CPM A; 
#chains in the Genus database with same CATH topology
 4GKJ H;  2JEB I;  2OPV A;  3QD7 X;  4NBQ A;  1V8C A;  2CTJ A;  2M6Q A;  4DV5 H;  1J5K A;  2CTE A;  2X06 A;  2QND A;  3OTO H;  1MSZ A;  2AXY A;  4DR5 H;  2E3U A;  3KDG A;  5BR8 H;  5IT9 W;  4DV1 H;  2Y3M A;  4OD6 A;  4E9J A;  2VKC A;  3J7A K;  2LTL A;  1VBI A;  1ZZK A;  4YY3 H;  4LFA H;  1WE8 A;  2FMR A;  4FJU A;  2PQU A;  2HH2 A;  5A2Q W;  4JI7 H;  4X62 H;  4LF9 H;  4LF8 H;  1J4W A;  2Z0S A;  1DTJ A;  1Z2I A;  3UOE A;  4B3M H;  1EC6 A;  4JI2 H;  4NXN H;  4FJS A;  4JI8 H;  1I94 H;  2CTK A;  4WAL A;  3GAB A;  3T1H H;  1N34 H;  2DGR A;  2E5L H;  4LF6 H;  1FJG H;  4LFC H;  1HNX H;  1XMQ H;  2LF0 A;  1IBK H;  4LF4 H;  4DV3 H;  4JVY A;  1N36 H;  4AM3 A;  4DV4 H;  1IBM H;  2JZX A;  2M8W A;  4JI6 H;  2LTM A;  1IBL H;  4GKK H;  4KHP H;  2VQE H;  2UXC H;  3JAM W;  1I6U A;  1WVN A;  2ANR A;  4OO1 G;  4DV0 H;  2CWH A;  2ZQE A;  1ZZJ A;  1XNQ H;  1PQX A;  1V9N A;  4B8C D;  4EC5 A;  1X4N A;  2ANN A;  1WHR A;  4JI3 H;  4QMF B;  4AIM A;  1KHM A;  2HHH H;  1VIG A;  2NN6 G;  2K1H A;  2UXB H;  2FFM A;  4DR4 H;  3NCV A;  2ZM6 H;  4BA2 I;  2PY9 A;  4DR6 H;  2D9I A;  1S20 A;  1S03 G;  1DT4 A;  2BA0 A;  4LIJ A;  5JEA G;  2OPU A;  2CPM A;  4JYA H;  3J81 W;  1N33 H;  4B3R H;  4H8A A;  5DT9 A;  1ODH A;  1HNZ H;  4WAN A;  3I0P A;  4JV5 H;  3KDK A;  5IWA H;  4X64 H;  5FLX W;  4LF7 H;  2CTM A;  2G8Y A;  1HNW H;  4NZR M;  4JI5 H;  2UUC H;  4JVH A;  2LRR A;  1NXU A;  4G08 A;  4DUY H;  2VQF H;  4DR2 H;  1XMO H;  4DR3 H;  4IFD G;  5LMU H;  3RF2 A;  2UUB H;  4PDB A;  5LL6 b;  4B3S H;  2CPQ A;  2JA9 A;  3J80 W;  2PT7 G;  1X0A A;  4BA1 I;  1TUA A;  2MJH A;  3OSS D;  1XRH A;  4B3T H;  2P2R A;  4YHH H;  1HR0 H;  4NZT M;  1AN7 A;  4DUZ H;  1ZTG A;  1X4M A;  2HH3 A;  2JEA I;  2FPH X;  4OCH A;  4NXM H;  1FKA H;  1ZZI A;  3OET A;  2UU9 H;  4JI1 H;  5LMN H;  3VKE A;  4OX9 H;  4DV6 H;  2UXD H;  3AEV B;  4X66 H;  2UUA H;  3U1K A;  4DR1 H;  4B8T A;  1F0X A;  3T1Y H;  4JI4 H;  2F4V H;  1SEI A;  1X9Z A;  2JVZ A;  2BL5 A;  2YQR A;  4DV2 H;  1VIH A;  3GR5 A;  5C0X G;  3SB1 A;  1UG8 A;  2CWF A;  3L7Z C;  4DV7 H;  4JI0 H;  1XNR H;  1K1G A;  2JE6 I;  4LF5 H;  4LFB H;  4DR7 H;  2A1S A;  5K36 G;  1J5E H;  2CTL A;  4K0K H;  3EZJ A;  1N32 H;  1WTJ A;  4X65 H;  2O4C A;  3GKU A;  3V69 A;  2CTF A;  3FAU A;  4AQY H; 
#chains in the Genus database with same CATH homology
 2LRR A;  1WHR A;  2A1S A;  1UG8 A;  1MSZ A;  3GKU A;  2CPM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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