2ZQEA

Crystal structure of the smr domain of thermus thermophilus muts2
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
80
structure length
80
Chain Sequence
VKEVDLRGLTVAEALLEVDQALEEARALGLSTLRLLHGKGTGALRQAIREALRRDKRVESFADAPPGEGGHGVTVVALRP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dna binding protein
molecule keywords MutS2 protein
publication title Crystal structure of MutS2 endonuclease domain and the mechanism of homologous recombination suppression
pubmed doi rcsb
source organism Thermus thermophilus
total genus 25
structure length 80
sequence length 80
ec nomenclature
pdb deposition date 2008-08-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01713 Smr Smr domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.110 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 Ribosomal Protein S8; Chain: A, domain 1 2zqeA00
3FAUA 2ZQEA 2D9IA 2VKCA 4OCHA 4OD6A 3QD7X
chains in the Genus database with same CATH superfamily
3KDKA 4EC5A 2LRRA 1PQXA 1AN7A 2FFMA 4JVHA 1UG8A 4DR7H 1V9NA 1WTJA 2PY9A 2JE6I 2JVZA 4NBQA 3V69A 4AIMA 3FAUA 4LFAH 4B3TH 4LFBH 1VIGA 3I0PA 4FJUA 2UUCH 4JI8H 2ZM6H 4DR6H 2AXYA 5LMNH 4FJSA 3T1HH 1N32H 4LF9H 2LF0A 4YHHH 1IBLH 2YQRA 1IBKH 5IWAH 4AQYH 4DV4H 3OTOH 2UUBH 4OD6A 1HNXH 1X0AA 5A2QW 4JVYA 1S20A 2F4VH 4DR5H 2CTJA 2CWHA 3OETA 1TUAA 1SEIA 1XRHA 3JAMW 2ANNA 2CTLA 1I6UA 2HH3A 4NXMH 4GKKH 4IFDG 2O4CA 2DGRA 2FMRA 2Z0SA 4H8AA 4BA1I 4JI3H 4LF8H 1K1GA 4GKJH 2OPVA 1WE8A 5DT9A 2M8WA 3UOEA 1N34H 2OPUA 4LF4H 2UUAH 1MSZA 2HH2A 5K36G 2CTEA 4PDBA 1I94H 2BA0A 2X06A 2CPMA 4BA2I 1NXUA 4DV6H 2D9IA 2VKCA 4G08A 4LIJA 4JI2H 3RF2A 4LFCH 2K1HA 3GKUA 5BR8H 4DUYH 3J80W 2JZXA 2CWFA 4B8TA 3J81W 4JI1H 4OO1G 3SB1A 1XMOH 2MJHA 4LF6H 4DR1H 2UXCH 4DR4H 3EZJA 2LTLA 2UXBH 1ODHA 3VKEA 2JA9A 4OX9H 2E3UA 1ZZKA 2PT7G 3NCVA 4E9JA 4LF7H 1J5KA 1Z2IA 1FJGH 3AEVB 1N33H 1VBIA 2UU9H 4B3SH 5IT9W 4X64H 2G8YA 2VQFH 4NZRM 4DR3H 3J7AK 1DTJA 1J4WA 2JEBI 3U1KA 1ZZIA 1S03G 1KHMA 1FKAH 1XNQH 4B3MH 4NZTM 1X4MA 2BL5A 2ANRA 4DV5H 1IBMH 3T1YH 1J5EH 4JI4H 4WALA 1WHRA 2E5LH 2VQEH 4WANA 2CTKA 4JYAH 2A1SA 5LMUH 4AM3A 3L7ZC 4K0KH 4YY3H 4KHPH 4DV7H 4B8CD 1HR0H 1HNWH 1WVNA 2HHHH 2JEAI 4NXNH 1N36H 4OCHA 1F0XA 5FLXW 2FPHX 4JI6H 4DR2H 2Y3MA 5C0XG 4JV5H 2LTMA 2CTFA 2NN6G 2P2RA 4JI5H 1ZZJA 4X66H 1ZTGA 2PQUA 4JI7H 4QMFB 4LF5H 2UXDH 3GR5A 1XMQH 1DT4A 3KDGA 4JI0H 4DV3H 2CTMA 3OSSD 1VIHA 3QD7X 1EC6A 1X9ZA 2M6QA 4DV2H 4DUZH 3GABA 2ZQEA 2CPQA 1HNZH 1XNRH 4B3RH 1X4NA 4DV0H 5LL6b 4DV1H 2QNDA 4X65H 4X62H 1V8CA 5JEAG
chains in the Genus database with same CATH topology
3KDKA 4EC5A 1AN7A 4DR7H 3FAUA 4LFAH 4B3TH 4LFBH 2UUCH 4JI8H 2ZM6H 4DR6H 1N32H 5LMNH 3T1HH 4LF9H 2LF0A 4YHHH 1IBLH 1IBKH 5IWAH 4AQYH 4DV4H 3OTOH 2UUBH 4OD6A 1HNXH 5A2QW 2F4VH 4DR5H 3OETA 1SEIA 3JAMW 1I6UA 4NXMH 4GKKH 2O4CA 4JI3H 4LF8H 4GKJH 5DT9A 1N34H 4LF4H 2UUAH 4PDBA 1I94H 4DV6H 2D9IA 2VKCA 4G08A 4JI2H 3RF2A 4LFCH 5BR8H 4DUYH 3J80W 3J81W 4JI1H 3SB1A 1XMOH 4LF6H 4DR1H 2UXCH 4DR4H 3EZJA 2UXBH 1ODHA 4OX9H 3NCVA 1FJGH 2PT7G 1N33H 4E9JA 4LF7H 2UU9H 4B3SH 5IT9W 4X64H 2VQFH 4NZRM 4DR3H 3J7AK 1S03G 1FKAH 1XNQH 4B3MH 4NZTM 4DV5H 1IBMH 3T1YH 1J5EH 4JI4H 2E5LH 2VQEH 4JYAH 5LMUH 4K0KH 4YY3H 4KHPH 4DV7H 4B8CD 1HR0H 1HNWH 2HHHH 4NXNH 1N36H 4OCHA 1F0XA 5FLXW 2FPHX 4JI6H 4DR2H 2Y3MA 4JV5H 4JI5H 4X66H 4JI7H 4LF5H 2UXDH 1XMQH 3GR5A 3KDGA 4JI0H 4DV3H 3OSSD 3QD7X 1X9ZA 4DV2H 4DUZH 3GABA 2ZQEA 1HNZH 1XNRH 4B3RH 4DV0H 5LL6b 4DV1H 4X65H 4X62H
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FAU A;  2ZQE A;  2D9I A;  2VKC A;  4OCH A;  4OD6 A;  3QD7 X; 
#chains in the Genus database with same CATH topology
 3KDK A;  4EC5 A;  2LRR A;  1PQX A;  1AN7 A;  2FFM A;  4JVH A;  1UG8 A;  4DR7 H;  1V9N A;  1WTJ A;  2PY9 A;  2JE6 I;  2JVZ A;  4NBQ A;  3V69 A;  4AIM A;  3FAU A;  4LFA H;  4B3T H;  4LFB H;  1VIG A;  3I0P A;  4FJU A;  2UUC H;  4JI8 H;  2ZM6 H;  4DR6 H;  2AXY A;  5LMN H;  4FJS A;  3T1H H;  1N32 H;  4LF9 H;  2LF0 A;  4YHH H;  1IBL H;  2YQR A;  1IBK H;  5IWA H;  4AQY H;  4DV4 H;  3OTO H;  2UUB H;  4OD6 A;  1HNX H;  1X0A A;  5A2Q W;  4JVY A;  1S20 A;  2F4V H;  4DR5 H;  2CTJ A;  2CWH A;  3OET A;  1TUA A;  1SEI A;  1XRH A;  3JAM W;  2ANN A;  2CTL A;  1I6U A;  2HH3 A;  4NXM H;  4GKK H;  4IFD G;  2O4C A;  2DGR A;  2FMR A;  2Z0S A;  4H8A A;  4BA1 I;  4JI3 H;  4LF8 H;  1K1G A;  4GKJ H;  2OPV A;  1WE8 A;  5DT9 A;  2M8W A;  3UOE A;  1N34 H;  2OPU A;  4LF4 H;  2UUA H;  1MSZ A;  2HH2 A;  5K36 G;  2CTE A;  4PDB A;  1I94 H;  2BA0 A;  2X06 A;  2CPM A;  4BA2 I;  1NXU A;  4DV6 H;  2D9I A;  2VKC A;  4G08 A;  4LIJ A;  4JI2 H;  3RF2 A;  4LFC H;  2K1H A;  3GKU A;  5BR8 H;  4DUY H;  3J80 W;  2JZX A;  2CWF A;  4B8T A;  3J81 W;  4JI1 H;  4OO1 G;  3SB1 A;  1XMO H;  2MJH A;  4LF6 H;  4DR1 H;  2UXC H;  4DR4 H;  3EZJ A;  2LTL A;  2UXB H;  1ODH A;  3VKE A;  2JA9 A;  4OX9 H;  2E3U A;  1ZZK A;  2PT7 G;  3NCV A;  4E9J A;  4LF7 H;  1J5K A;  1Z2I A;  1FJG H;  3AEV B;  1N33 H;  1VBI A;  2UU9 H;  4B3S H;  5IT9 W;  4X64 H;  2G8Y A;  2VQF H;  4NZR M;  4DR3 H;  3J7A K;  1DTJ A;  1J4W A;  2JEB I;  3U1K A;  1ZZI A;  1S03 G;  1KHM A;  1FKA H;  1XNQ H;  4B3M H;  4NZT M;  1X4M A;  2BL5 A;  2ANR A;  4DV5 H;  1IBM H;  3T1Y H;  1J5E H;  4JI4 H;  4WAL A;  1WHR A;  2E5L H;  2VQE H;  4WAN A;  2CTK A;  4JYA H;  2A1S A;  5LMU H;  4AM3 A;  3L7Z C;  4K0K H;  4YY3 H;  4KHP H;  4DV7 H;  4B8C D;  1HR0 H;  1HNW H;  1WVN A;  2HHH H;  2JEA I;  4NXN H;  1N36 H;  4OCH A;  1F0X A;  5FLX W;  2FPH X;  4JI6 H;  4DR2 H;  2Y3M A;  5C0X G;  4JV5 H;  2LTM A;  2CTF A;  2NN6 G;  2P2R A;  4JI5 H;  1ZZJ A;  4X66 H;  1ZTG A;  2PQU A;  4JI7 H;  4QMF B;  4LF5 H;  2UXD H;  3GR5 A;  1XMQ H;  1DT4 A;  3KDG A;  4JI0 H;  4DV3 H;  2CTM A;  3OSS D;  1VIH A;  3QD7 X;  1EC6 A;  1X9Z A;  2M6Q A;  4DV2 H;  4DUZ H;  3GAB A;  2ZQE A;  2CPQ A;  1HNZ H;  1XNR H;  4B3R H;  1X4N A;  4DV0 H;  5LL6 b;  4DV1 H;  2QND A;  4X65 H;  4X62 H;  1V8C A;  5JEA G; 
#chains in the Genus database with same CATH homology
 3KDK A;  4EC5 A;  1AN7 A;  4DR7 H;  3FAU A;  4LFA H;  4B3T H;  4LFB H;  2UUC H;  4JI8 H;  2ZM6 H;  4DR6 H;  1N32 H;  5LMN H;  3T1H H;  4LF9 H;  2LF0 A;  4YHH H;  1IBL H;  1IBK H;  5IWA H;  4AQY H;  4DV4 H;  3OTO H;  2UUB H;  4OD6 A;  1HNX H;  5A2Q W;  2F4V H;  4DR5 H;  3OET A;  1SEI A;  3JAM W;  1I6U A;  4NXM H;  4GKK H;  2O4C A;  4JI3 H;  4LF8 H;  4GKJ H;  5DT9 A;  1N34 H;  4LF4 H;  2UUA H;  4PDB A;  1I94 H;  4DV6 H;  2D9I A;  2VKC A;  4G08 A;  4JI2 H;  3RF2 A;  4LFC H;  5BR8 H;  4DUY H;  3J80 W;  3J81 W;  4JI1 H;  3SB1 A;  1XMO H;  4LF6 H;  4DR1 H;  2UXC H;  4DR4 H;  3EZJ A;  2UXB H;  1ODH A;  4OX9 H;  3NCV A;  1FJG H;  2PT7 G;  1N33 H;  4E9J A;  4LF7 H;  2UU9 H;  4B3S H;  5IT9 W;  4X64 H;  2VQF H;  4NZR M;  4DR3 H;  3J7A K;  1S03 G;  1FKA H;  1XNQ H;  4B3M H;  4NZT M;  4DV5 H;  1IBM H;  3T1Y H;  1J5E H;  4JI4 H;  2E5L H;  2VQE H;  4JYA H;  5LMU H;  4K0K H;  4YY3 H;  4KHP H;  4DV7 H;  4B8C D;  1HR0 H;  1HNW H;  2HHH H;  4NXN H;  1N36 H;  4OCH A;  1F0X A;  5FLX W;  2FPH X;  4JI6 H;  4DR2 H;  2Y3M A;  4JV5 H;  4JI5 H;  4X66 H;  4JI7 H;  4LF5 H;  2UXD H;  1XMQ H;  3GR5 A;  3KDG A;  4JI0 H;  4DV3 H;  3OSS D;  3QD7 X;  1X9Z A;  4DV2 H;  4DUZ H;  3GAB A;  2ZQE A;  1HNZ H;  1XNR H;  4B3R H;  4DV0 H;  5LL6 b;  4DV1 H;  4X65 H;  4X62 H; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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