2ZQEA

Crystal structure of the smr domain of thermus thermophilus muts2
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
80
structure length
80
Chain Sequence
VKEVDLRGLTVAEALLEVDQALEEARALGLSTLRLLHGKGTGALRQAIREALRRDKRVESFADAPPGEGGHGVTVVALRP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords MutS2 protein
publication title Crystal structure of MutS2 endonuclease domain and the mechanism of homologous recombination suppression
pubmed doi rcsb
source organism Thermus thermophilus
molecule tags Dna binding protein
total genus 25
structure length 80
sequence length 80
ec nomenclature
pdb deposition date 2008-08-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01713 Smr Smr domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.110 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 Ribosomal Protein S8; Chain: A, domain 1 2zqeA00
3FAUA 4OD6A 3QD7X 2ZQEA 2D9IA 2VKCA 4OCHA
chains in the Genus database with same CATH superfamily
4OX9H 4GKKH 1F0XA 1FJGH 2CTMA 2A1SA 5JEAG 1ZTGA 2CWHA 1X9ZA 5LMUH 4AIMA 2VQFH 2D9IA 5IWAH 1X4NA 4JI2H 2MJHA 4DR7H 4OD6A 2LTMA 2BL5A 5K36G 4EC5A 4WALA 4NZTM 1ZZIA 1DTJA 1TUAA 2UXDH 2JE6I 4X64H 4DR5H 4G08A 3FAUA 4NXMH 2G8YA 4DR2H 3T1YH 2P2RA 2HH3A 1FKAH 4LF9H 2CTKA 1PQXA 3GR5A 4B8TA 1WTJA 1DT4A 2K1HA 2M8WA 4B3TH 3J7AK 1K1GA 4JI7H 4BA1I 4DUYH 1WHRA 2ZM6H 4DV2H 1XNRH 1XNQH 4QMFB 4LF8H 4LFAH 4JYAH 4JVHA 1S20A 3KDKA 5FLXW 2JZXA 2CTJA 4B8CD 2BA0A 2DGRA 2NN6G 4K0KH 3RF2A 1UG8A 2HH2A 4DV1H 4DV6H 4NXNH 1HNXH 4KHPH 5BR8H 1VBIA 1IBMH 4DR6H 4FJSA 2CTFA 2CWFA 2UUBH 3J81W 2ANRA 4DV3H 4JI8H 1IBLH 4DR3H 2UUAH 1Z2IA 1HNZH 4H8AA 1HNWH 2FFMA 3AEVB 4PDBA 1EC6A 4LF7H 2OPVA 4DV4H 4JI0H 1I94H 4OO1G 2M6QA 1X0AA 2ZQEA 4JVYA 2FMRA 3GKUA 2CPMA 1N36H 2CTEA 2UXBH 4DV5H 2QNDA 3EZJA 2E5LH 1V8CA 4B3SH 1SEIA 1KHMA 2YQRA 4LF5H 2OPUA 4X62H 1N33H 2HHHH 4DUZH 1HR0H 3OSSD 4B3RH 4DV0H 2F4VH 1X4MA 2VQEH 2UXCH 4BA2I 2JA9A 2FPHX 4NBQA 4OCHA 2JEAI 3V69A 1I6UA 2CPQA 4LFBH 2LRRA 2PQUA 1VIHA 2UU9H 1VIGA 1J5EH 1IBKH 4LF4H 5C0XG 4LIJA 4YHHH 4X66H 4B3MH 1XMOH 3JAMW 5A2QW 1J4WA 1ZZKA 4FJUA 4AM3A 2VKCA 4DR4H 1N32H 5LMNH 3L7ZC 2UUCH 1AN7A 2LF0A 4LFCH 1XRHA 3U1KA 3NCVA 4YY3H 1ZZJA 3OETA 4E9JA 4JI6H 1WVNA 2JEBI 2AXYA 4JV5H 2Z0SA 2LTLA 3J80W 4JI1H 3QD7X 4DR1H 1N34H 3KDGA 2E3UA 4X65H 1ODHA 1J5KA 4LF6H 1XMQH 3UOEA 4NZRM 1S03G 4WANA 2PT7G 4AQYH 3VKEA 4JI3H 2Y3MA 4DV7H 2PY9A 1V9NA 5IT9W 1WE8A 3I0PA 2O4CA 5DT9A 1MSZA 3OTOH 5LL6b 1NXUA 4JI4H 4GKJH 2JVZA 2CTLA 2ANNA 3SB1A 4IFDG 3GABA 3T1HH 4JI5H 2X06A
chains in the Genus database with same CATH topology
4OX9H 4GKKH 1F0XA 1FJGH 1X9ZA 5LMUH 2VQFH 2D9IA 5IWAH 4JI2H 4DR7H 4OD6A 4EC5A 4NZTM 2UXDH 4X64H 4DR5H 4G08A 3FAUA 4NXMH 3T1YH 4DR2H 1FKAH 4LF9H 3GR5A 4B3TH 3J7AK 4JI7H 4DUYH 2ZM6H 4DV2H 1XNRH 1XNQH 4LF8H 4LFAH 4JYAH 3KDKA 5FLXW 4B8CD 4K0KH 3RF2A 4DV1H 4DV6H 4NXNH 1HNXH 4KHPH 5BR8H 4DR6H 1IBMH 2UUBH 3J81W 4JI8H 4DV3H 1IBLH 4DR3H 2UUAH 1HNZH 1HNWH 4PDBA 4LF7H 4DV4H 4JI0H 1I94H 2ZQEA 1N36H 2UXBH 4DV5H 3EZJA 2E5LH 4B3SH 1SEIA 4LF5H 4X62H 1N33H 2HHHH 4DUZH 1HR0H 3OSSD 4B3RH 4DV0H 2F4VH 2VQEH 2UXCH 2FPHX 4OCHA 1I6UA 4LFBH 2UU9H 1J5EH 1IBKH 4LF4H 4YHHH 4X66H 4B3MH 1XMOH 3JAMW 5A2QW 2VKCA 4DR4H 1N32H 5LMNH 2UUCH 1AN7A 2LF0A 4LFCH 3NCVA 4YY3H 3OETA 4E9JA 4JI6H 4JV5H 3J80W 4JI1H 3QD7X 4DR1H 1N34H 3KDGA 4X65H 1ODHA 4LF6H 1S03G 1XMQH 4NZRM 2PT7G 4AQYH 4JI3H 2Y3MA 4DV7H 5IT9W 2O4CA 5DT9A 3OTOH 5LL6b 4JI4H 4GKJH 3SB1A 3GABA 3T1HH 4JI5H
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FAU A;  4OD6 A;  3QD7 X;  2ZQE A;  2D9I A;  2VKC A;  4OCH A; 
#chains in the Genus database with same CATH topology
 4OX9 H;  4GKK H;  1F0X A;  1FJG H;  2CTM A;  2A1S A;  5JEA G;  1ZTG A;  2CWH A;  1X9Z A;  5LMU H;  4AIM A;  2VQF H;  2D9I A;  5IWA H;  1X4N A;  4JI2 H;  2MJH A;  4DR7 H;  4OD6 A;  2LTM A;  2BL5 A;  5K36 G;  4EC5 A;  4WAL A;  4NZT M;  1ZZI A;  1DTJ A;  1TUA A;  2UXD H;  2JE6 I;  4X64 H;  4DR5 H;  4G08 A;  3FAU A;  4NXM H;  2G8Y A;  4DR2 H;  3T1Y H;  2P2R A;  2HH3 A;  1FKA H;  4LF9 H;  2CTK A;  1PQX A;  3GR5 A;  4B8T A;  1WTJ A;  1DT4 A;  2K1H A;  2M8W A;  4B3T H;  3J7A K;  1K1G A;  4JI7 H;  4BA1 I;  4DUY H;  1WHR A;  2ZM6 H;  4DV2 H;  1XNR H;  1XNQ H;  4QMF B;  4LF8 H;  4LFA H;  4JYA H;  4JVH A;  1S20 A;  3KDK A;  5FLX W;  2JZX A;  2CTJ A;  4B8C D;  2BA0 A;  2DGR A;  2NN6 G;  4K0K H;  3RF2 A;  1UG8 A;  2HH2 A;  4DV1 H;  4DV6 H;  4NXN H;  1HNX H;  4KHP H;  5BR8 H;  1VBI A;  1IBM H;  4DR6 H;  4FJS A;  2CTF A;  2CWF A;  2UUB H;  3J81 W;  2ANR A;  4DV3 H;  4JI8 H;  1IBL H;  4DR3 H;  2UUA H;  1Z2I A;  1HNZ H;  4H8A A;  1HNW H;  2FFM A;  3AEV B;  4PDB A;  1EC6 A;  4LF7 H;  2OPV A;  4DV4 H;  4JI0 H;  1I94 H;  4OO1 G;  2M6Q A;  1X0A A;  2ZQE A;  4JVY A;  2FMR A;  3GKU A;  2CPM A;  1N36 H;  2CTE A;  2UXB H;  4DV5 H;  2QND A;  3EZJ A;  2E5L H;  1V8C A;  4B3S H;  1SEI A;  1KHM A;  2YQR A;  4LF5 H;  2OPU A;  4X62 H;  1N33 H;  2HHH H;  4DUZ H;  1HR0 H;  3OSS D;  4B3R H;  4DV0 H;  2F4V H;  1X4M A;  2VQE H;  2UXC H;  4BA2 I;  2JA9 A;  2FPH X;  4NBQ A;  4OCH A;  2JEA I;  3V69 A;  1I6U A;  2CPQ A;  4LFB H;  2LRR A;  2PQU A;  1VIH A;  2UU9 H;  1VIG A;  1J5E H;  1IBK H;  4LF4 H;  5C0X G;  4LIJ A;  4YHH H;  4X66 H;  4B3M H;  1XMO H;  3JAM W;  5A2Q W;  1J4W A;  1ZZK A;  4FJU A;  4AM3 A;  2VKC A;  4DR4 H;  1N32 H;  5LMN H;  3L7Z C;  2UUC H;  1AN7 A;  2LF0 A;  4LFC H;  1XRH A;  3U1K A;  3NCV A;  4YY3 H;  1ZZJ A;  3OET A;  4E9J A;  4JI6 H;  1WVN A;  2JEB I;  2AXY A;  4JV5 H;  2Z0S A;  2LTL A;  3J80 W;  4JI1 H;  3QD7 X;  4DR1 H;  1N34 H;  3KDG A;  2E3U A;  4X65 H;  1ODH A;  1J5K A;  4LF6 H;  1XMQ H;  3UOE A;  4NZR M;  1S03 G;  4WAN A;  2PT7 G;  4AQY H;  3VKE A;  4JI3 H;  2Y3M A;  4DV7 H;  2PY9 A;  1V9N A;  5IT9 W;  1WE8 A;  3I0P A;  2O4C A;  5DT9 A;  1MSZ A;  3OTO H;  5LL6 b;  1NXU A;  4JI4 H;  4GKJ H;  2JVZ A;  2CTL A;  2ANN A;  3SB1 A;  4IFD G;  3GAB A;  3T1H H;  4JI5 H;  2X06 A; 
#chains in the Genus database with same CATH homology
 4OX9 H;  4GKK H;  1F0X A;  1FJG H;  1X9Z A;  5LMU H;  2VQF H;  2D9I A;  5IWA H;  4JI2 H;  4DR7 H;  4OD6 A;  4EC5 A;  4NZT M;  2UXD H;  4X64 H;  4DR5 H;  4G08 A;  3FAU A;  4NXM H;  3T1Y H;  4DR2 H;  1FKA H;  4LF9 H;  3GR5 A;  4B3T H;  3J7A K;  4JI7 H;  4DUY H;  2ZM6 H;  4DV2 H;  1XNR H;  1XNQ H;  4LF8 H;  4LFA H;  4JYA H;  3KDK A;  5FLX W;  4B8C D;  4K0K H;  3RF2 A;  4DV1 H;  4DV6 H;  4NXN H;  1HNX H;  4KHP H;  5BR8 H;  4DR6 H;  1IBM H;  2UUB H;  3J81 W;  4JI8 H;  4DV3 H;  1IBL H;  4DR3 H;  2UUA H;  1HNZ H;  1HNW H;  4PDB A;  4LF7 H;  4DV4 H;  4JI0 H;  1I94 H;  2ZQE A;  1N36 H;  2UXB H;  4DV5 H;  3EZJ A;  2E5L H;  4B3S H;  1SEI A;  4LF5 H;  4X62 H;  1N33 H;  2HHH H;  4DUZ H;  1HR0 H;  3OSS D;  4B3R H;  4DV0 H;  2F4V H;  2VQE H;  2UXC H;  2FPH X;  4OCH A;  1I6U A;  4LFB H;  2UU9 H;  1J5E H;  1IBK H;  4LF4 H;  4YHH H;  4X66 H;  4B3M H;  1XMO H;  3JAM W;  5A2Q W;  2VKC A;  4DR4 H;  1N32 H;  5LMN H;  2UUC H;  1AN7 A;  2LF0 A;  4LFC H;  3NCV A;  4YY3 H;  3OET A;  4E9J A;  4JI6 H;  4JV5 H;  3J80 W;  4JI1 H;  3QD7 X;  4DR1 H;  1N34 H;  3KDG A;  4X65 H;  1ODH A;  4LF6 H;  1S03 G;  1XMQ H;  4NZR M;  2PT7 G;  4AQY H;  4JI3 H;  2Y3M A;  4DV7 H;  5IT9 W;  2O4C A;  5DT9 A;  3OTO H;  5LL6 b;  4JI4 H;  4GKJ H;  3SB1 A;  3GAB A;  3T1H H;  4JI5 H; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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