2ZQEA

Crystal structure of the smr domain of thermus thermophilus muts2
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
80
structure length
80
Chain Sequence
VKEVDLRGLTVAEALLEVDQALEEARALGLSTLRLLHGKGTGALRQAIREALRRDKRVESFADAPPGEGGHGVTVVALRP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of MutS2 endonuclease domain and the mechanism of homologous recombination suppression
pubmed doi rcsb
source organism Thermus thermophilus
molecule tags Dna binding protein
molecule keywords MutS2 protein
total genus 25
structure length 80
sequence length 80
ec nomenclature
pdb deposition date 2008-08-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01713 Smr Smr domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.110 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 Ribosomal Protein S8; Chain: A, domain 1 2zqeA00
2ZQEA 2D9IA 2VKCA 4OCHA 3QD7X 4OD6A 3FAUA
chains in the Genus database with same CATH superfamily
2K1HA 2AXYA 5BR8H 2UXBH 1WTJA 1ZTGA 3I0PA 3T1HH 1HNXH 4K0KH 3KDGA 4PDBA 2BA0A 4YHHH 2FMRA 4JI3H 4LF6H 2X06A 4B8TA 2E5LH 1XNRH 1ZZJA 4JI5H 4LF5H 1UG8A 4LF7H 5C0XG 4FJUA 4WALA 2PQUA 1DT4A 4DV5H 1F0XA 5LL6b 4DR6H 4LIJA 4DV4H 1SEIA 1NXUA 2ANRA 3SB1A 2CPMA 1DTJA 2E3UA 3OSSD 1WHRA 4DV6H 4X64H 4DV1H 1AN7A 2QNDA 4OX9H 1S03G 1I6UA 4BA2I 5A2QW 1J4WA 2VQFH 3OETA 4H8AA 1XMQH 1X4MA 1XRHA 4NZTM 4LF4H 2CTJA 5LMUH 2CTEA 3FAUA 4DR5H 2O4CA 2CWHA 4IFDG 4YY3H 2NN6G 2D9IA 2UXDH 1XMOH 4JI7H 4DV2H 1ODHA 4JI1H 4JI4H 1ZZKA 2JZXA 4JI0H 2JE6I 4DV0H 2UXCH 2LRRA 4NBQA 3GABA 2LF0A 1S20A 2LTMA 2CTMA 4EC5A 4GKJH 2F4VH 4JVYA 1MSZA 4AIMA 1FJGH 2Z0SA 4DUYH 4NZRM 4OD6A 1J5KA 4B3TH 2JVZA 4BA1I 3EZJA 3OTOH 4DV3H 4DR1H 1XNQH 2JA9A 2CTKA 4JI2H 2UUCH 4OO1G 4E9JA 4AM3A 1EC6A 3RF2A 2UU9H 2CTFA 1PQXA 5JEAG 4DR4H 3UOEA 4GKKH 1VIGA 1I94H 5DT9A 2PY9A 2FPHX 1N32H 1IBMH 4NXMH 4JYAH 4LFBH 3VKEA 4B3MH 4NXNH 1IBKH 1X0AA 2HH2A 2CWFA 2CTLA 2ANNA 3L7ZC 3JAMW 2LTLA 3GR5A 4FJSA 2G8YA 4B8CD 2VQEH 4KHPH 1TUAA 1VBIA 4X62H 4AQYH 3AEVB 4LF8H 2OPUA 3GKUA 2P2RA 4WANA 4X66H 2M8WA 3NCVA 1HR0H 1HNZH 4JV5H 1K1GA 1N34H 4LFAH 5K36G 2JEBI 2UUAH 1KHMA 3U1KA 2ZM6H 1FKAH 2OPVA 3J80W 4JI8H 1N33H 1WVNA 3QD7X 2DGRA 1HNWH 1X4NA 4G08A 4X65H 2A1SA 2HH3A 5IWAH 5LMNH 2CPQA 1V8CA 3KDKA 4DR2H 4JI6H 1V9NA 1Z2IA 4B3SH 2FFMA 2PT7G 1VIHA 2M6QA 4LFCH 3T1YH 1J5EH 5IT9W 2ZQEA 3J81W 1N36H 1X9ZA 2MJHA 4DR7H 4B3RH 2BL5A 2Y3MA 3V69A 4DV7H 4QMFB 4JVHA 2JEAI 4DR3H 5FLXW 3J7AK 2YQRA 2VKCA 4OCHA 1ZZIA 1IBLH 2HHHH 4DUZH 4LF9H 1WE8A 2UUBH
chains in the Genus database with same CATH topology
5BR8H 2UXBH 3T1HH 1HNXH 4K0KH 3KDGA 4PDBA 4YHHH 4LF6H 4JI3H 1XNRH 2E5LH 4JI5H 4LF5H 4LF7H 4DV5H 1F0XA 5LL6b 4DR6H 4DV4H 1SEIA 3SB1A 3OSSD 4DV6H 4X64H 4DV1H 1AN7A 4OX9H 1S03G 1I6UA 5A2QW 2VQFH 3OETA 1XMQH 4NZTM 4LF4H 5LMUH 3FAUA 4DR5H 2O4CA 4YY3H 2D9IA 2UXDH 1XMOH 4JI7H 4DV2H 1ODHA 4JI1H 4JI4H 4JI0H 4DV0H 2UXCH 3GABA 2LF0A 4EC5A 4GKJH 2F4VH 1FJGH 4DUYH 4B3TH 4NZRM 4OD6A 3EZJA 3OTOH 4DV3H 4DR1H 1XNQH 4JI2H 2UUCH 4E9JA 3RF2A 2UU9H 4DR4H 4GKKH 1I94H 5DT9A 2FPHX 1N32H 4NXMH 4JYAH 4LFBH 4B3MH 4NXNH 1IBKH 3JAMW 3GR5A 2VQEH 4KHPH 4B8CD 4AQYH 4X62H 4LF8H 4X66H 3NCVA 1HR0H 1HNZH 4JV5H 1N34H 4LFAH 2UUAH 1FKAH 2ZM6H 3J80W 4JI8H 1N33H 3QD7X 1HNWH 4G08A 4X65H 4JI6H 5IWAH 5LMNH 4DR2H 3KDKA 4B3SH 2PT7G 4LFCH 3T1YH 1J5EH 5IT9W 2ZQEA 3J81W 1N36H 1X9ZA 4DR7H 4B3RH 2Y3MA 4DV7H 4DR3H 5FLXW 3J7AK 2VKCA 4OCHA 1IBLH 2HHHH 4DUZH 4LF9H 1IBMH 2UUBH
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZQE A;  2D9I A;  2VKC A;  4OCH A;  3QD7 X;  4OD6 A;  3FAU A; 
#chains in the Genus database with same CATH topology
 2K1H A;  2AXY A;  5BR8 H;  2UXB H;  1WTJ A;  1ZTG A;  3I0P A;  3T1H H;  1HNX H;  4K0K H;  3KDG A;  4PDB A;  2BA0 A;  4YHH H;  2FMR A;  4JI3 H;  4LF6 H;  2X06 A;  4B8T A;  2E5L H;  1XNR H;  1ZZJ A;  4JI5 H;  4LF5 H;  1UG8 A;  4LF7 H;  5C0X G;  4FJU A;  4WAL A;  2PQU A;  1DT4 A;  4DV5 H;  1F0X A;  5LL6 b;  4DR6 H;  4LIJ A;  4DV4 H;  1SEI A;  1NXU A;  2ANR A;  3SB1 A;  2CPM A;  1DTJ A;  2E3U A;  3OSS D;  1WHR A;  4DV6 H;  4X64 H;  4DV1 H;  1AN7 A;  2QND A;  4OX9 H;  1S03 G;  1I6U A;  4BA2 I;  5A2Q W;  1J4W A;  2VQF H;  3OET A;  4H8A A;  1XMQ H;  1X4M A;  1XRH A;  4NZT M;  4LF4 H;  2CTJ A;  5LMU H;  2CTE A;  3FAU A;  4DR5 H;  2O4C A;  2CWH A;  4IFD G;  4YY3 H;  2NN6 G;  2D9I A;  2UXD H;  1XMO H;  4JI7 H;  4DV2 H;  1ODH A;  4JI1 H;  4JI4 H;  1ZZK A;  2JZX A;  4JI0 H;  2JE6 I;  4DV0 H;  2UXC H;  2LRR A;  4NBQ A;  3GAB A;  2LF0 A;  1S20 A;  2LTM A;  2CTM A;  4EC5 A;  4GKJ H;  2F4V H;  4JVY A;  1MSZ A;  4AIM A;  1FJG H;  2Z0S A;  4DUY H;  4NZR M;  4OD6 A;  1J5K A;  4B3T H;  2JVZ A;  4BA1 I;  3EZJ A;  3OTO H;  4DV3 H;  4DR1 H;  1XNQ H;  2JA9 A;  2CTK A;  4JI2 H;  2UUC H;  4OO1 G;  4E9J A;  4AM3 A;  1EC6 A;  3RF2 A;  2UU9 H;  2CTF A;  1PQX A;  5JEA G;  4DR4 H;  3UOE A;  4GKK H;  1VIG A;  1I94 H;  5DT9 A;  2PY9 A;  2FPH X;  1N32 H;  1IBM H;  4NXM H;  4JYA H;  4LFB H;  3VKE A;  4B3M H;  4NXN H;  1IBK H;  1X0A A;  2HH2 A;  2CWF A;  2CTL A;  2ANN A;  3L7Z C;  3JAM W;  2LTL A;  3GR5 A;  4FJS A;  2G8Y A;  4B8C D;  2VQE H;  4KHP H;  1TUA A;  1VBI A;  4X62 H;  4AQY H;  3AEV B;  4LF8 H;  2OPU A;  3GKU A;  2P2R A;  4WAN A;  4X66 H;  2M8W A;  3NCV A;  1HR0 H;  1HNZ H;  4JV5 H;  1K1G A;  1N34 H;  4LFA H;  5K36 G;  2JEB I;  2UUA H;  1KHM A;  3U1K A;  2ZM6 H;  1FKA H;  2OPV A;  3J80 W;  4JI8 H;  1N33 H;  1WVN A;  3QD7 X;  2DGR A;  1HNW H;  1X4N A;  4G08 A;  4X65 H;  2A1S A;  2HH3 A;  5IWA H;  5LMN H;  2CPQ A;  1V8C A;  3KDK A;  4DR2 H;  4JI6 H;  1V9N A;  1Z2I A;  4B3S H;  2FFM A;  2PT7 G;  1VIH A;  2M6Q A;  4LFC H;  3T1Y H;  1J5E H;  5IT9 W;  2ZQE A;  3J81 W;  1N36 H;  1X9Z A;  2MJH A;  4DR7 H;  4B3R H;  2BL5 A;  2Y3M A;  3V69 A;  4DV7 H;  4QMF B;  4JVH A;  2JEA I;  4DR3 H;  5FLX W;  3J7A K;  2YQR A;  2VKC A;  4OCH A;  1ZZI A;  1IBL H;  2HHH H;  4DUZ H;  4LF9 H;  1WE8 A;  2UUB H; 
#chains in the Genus database with same CATH homology
 5BR8 H;  2UXB H;  3T1H H;  1HNX H;  4K0K H;  3KDG A;  4PDB A;  4YHH H;  4LF6 H;  4JI3 H;  1XNR H;  2E5L H;  4JI5 H;  4LF5 H;  4LF7 H;  4DV5 H;  1F0X A;  5LL6 b;  4DR6 H;  4DV4 H;  1SEI A;  3SB1 A;  3OSS D;  4DV6 H;  4X64 H;  4DV1 H;  1AN7 A;  4OX9 H;  1S03 G;  1I6U A;  5A2Q W;  2VQF H;  3OET A;  1XMQ H;  4NZT M;  4LF4 H;  5LMU H;  3FAU A;  4DR5 H;  2O4C A;  4YY3 H;  2D9I A;  2UXD H;  1XMO H;  4JI7 H;  4DV2 H;  1ODH A;  4JI1 H;  4JI4 H;  4JI0 H;  4DV0 H;  2UXC H;  3GAB A;  2LF0 A;  4EC5 A;  4GKJ H;  2F4V H;  1FJG H;  4DUY H;  4B3T H;  4NZR M;  4OD6 A;  3EZJ A;  3OTO H;  4DV3 H;  4DR1 H;  1XNQ H;  4JI2 H;  2UUC H;  4E9J A;  3RF2 A;  2UU9 H;  4DR4 H;  4GKK H;  1I94 H;  5DT9 A;  2FPH X;  1N32 H;  4NXM H;  4JYA H;  4LFB H;  4B3M H;  4NXN H;  1IBK H;  3JAM W;  3GR5 A;  2VQE H;  4KHP H;  4B8C D;  4AQY H;  4X62 H;  4LF8 H;  4X66 H;  3NCV A;  1HR0 H;  1HNZ H;  4JV5 H;  1N34 H;  4LFA H;  2UUA H;  1FKA H;  2ZM6 H;  3J80 W;  4JI8 H;  1N33 H;  3QD7 X;  1HNW H;  4G08 A;  4X65 H;  4JI6 H;  5IWA H;  5LMN H;  4DR2 H;  3KDK A;  4B3S H;  2PT7 G;  4LFC H;  3T1Y H;  1J5E H;  5IT9 W;  2ZQE A;  3J81 W;  1N36 H;  1X9Z A;  4DR7 H;  4B3R H;  2Y3M A;  4DV7 H;  4DR3 H;  5FLX W;  3J7A K;  2VKC A;  4OCH A;  1IBL H;  2HHH H;  4DUZ H;  4LF9 H;  1IBM H;  2UUB H; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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