2ZQEA

Crystal structure of the smr domain of thermus thermophilus muts2
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
80
structure length
80
Chain Sequence
VKEVDLRGLTVAEALLEVDQALEEARALGLSTLRLLHGKGTGALRQAIREALRRDKRVESFADAPPGEGGHGVTVVALRP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dna binding protein
molecule keywords MutS2 protein
publication title Crystal structure of MutS2 endonuclease domain and the mechanism of homologous recombination suppression
pubmed doi rcsb
source organism Thermus thermophilus
total genus 25
structure length 80
sequence length 80
ec nomenclature
pdb deposition date 2008-08-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01713 Smr Smr domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.110 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 Ribosomal Protein S8; Chain: A, domain 1 2zqeA00
3FAUA 2VKCA 4OCHA 4OD6A 2ZQEA 3QD7X 2D9IA
chains in the Genus database with same CATH superfamily
4NBQA 4DR2H 4DR3H 1WHRA 4B3RH 1WE8A 2O4CA 3U1KA 4LIJA 3EZJA 4DV2H 1PQXA 1ZTGA 5K36G 1UG8A 1HR0H 4JI0H 2HH3A 2UXDH 2E3UA 1Z2IA 4B8CD 4DV6H 1DTJA 1ZZJA 1X4MA 4JI5H 4AM3A 3RF2A 3T1HH 3T1YH 1S03G 2CTMA 2M6QA 4DR5H 3L7ZC 3JAMW 2P2RA 2UU9H 4PDBA 4B3MH 4WANA 2VKCA 4H8AA 4FJUA 1DT4A 2FMRA 2CTEA 1ZZKA 1K1GA 2CTLA 2JA9A 3KDGA 2LF0A 4BA1I 2HH2A 1V9NA 2K1HA 3FAUA 4DV1H 2HHHH 4JI7H 3GR5A 2LTMA 2MJHA 4FJSA 1IBKH 4JI1H 2FFMA 2ANRA 4LFBH 1I94H 2UXCH 4LFAH 1ODHA 2Y3MA 2VQFH 1J5EH 4DR7H 2UUAH 4IFDG 4LF7H 1X0AA 4DV4H 2PT7G 2UUCH 1IBMH 1SEIA 4DR6H 4JV5H 4NZRM 1F0XA 5IT9W 4DUZH 2UUBH 2LTLA 2BL5A 4JI4H 4DV5H 1XMQH 4LF5H 2D9IA 1VIGA 1N34H 2E5LH 4DR1H 2CPQA 2JE6I 1EC6A 1FKAH 5A2QW 4DV7H 4G08A 4E9JA 5LL6b 4JI3H 4JYAH 3UOEA 2CWFA 4OO1G 4LF9H 5BR8H 4B3SH 1KHMA 4X62H 5DT9A 2DGRA 1MSZA 5C0XG 2ZM6H 4LF8H 4LF4H 2PY9A 3OETA 1N33H 1J5KA 5LMNH 2YQRA 4AQYH 1HNWH 4JI2H 1XNQH 5JEAG 1HNXH 2QNDA 1N32H 1X9ZA 4OX9H 2CTJA 3OSSD 2CPMA 4DR4H 1S20A 4X64H 2X06A 2VQEH 4NZTM 1VIHA 2G8YA 2JZXA 2OPVA 3J81W 4JVHA 2F4VH 1WTJA 1TUAA 2OPUA 2BA0A 3QD7X 4YY3H 4B3TH 2A1SA 4JI8H 1XRHA 4JI6H 2CTKA 5FLXW 4B8TA 2NN6G 4GKKH 4DV3H 5IWAH 3VKEA 4X65H 2UXBH 2LRRA 1VBIA 4X66H 2JVZA 2FPHX 4KHPH 3V69A 1J4WA 1HNZH 4WALA 1XMOH 2ANNA 3GKUA 4JVYA 1ZZIA 2JEAI 4NXMH 2ZQEA 3GABA 3J80W 2Z0SA 4YHHH 1NXUA 3AEVB 4NXNH 3J7AK 3I0PA 4OCHA 4AIMA 3KDKA 2JEBI 1V8CA 1WVNA 1XNRH 5LMUH 4GKJH 1IBLH 4LFCH 1AN7A 2M8WA 4QMFB 4EC5A 4DUYH 1N36H 4LF6H 4OD6A 1FJGH 2AXYA 1I6UA 1X4NA 4BA2I 2CTFA 2CWHA 3OTOH 4DV0H 4K0KH 3SB1A 3NCVA 2PQUA
chains in the Genus database with same CATH topology
4DR2H 4DR3H 4B3RH 2O4CA 3EZJA 4DV2H 1HR0H 4JI0H 2UXDH 4B8CD 4DV6H 4JI5H 3RF2A 3T1HH 3T1YH 1S03G 4DR5H 3JAMW 2UU9H 4PDBA 4B3MH 2VKCA 3KDGA 2LF0A 2HHHH 3FAUA 4DV1H 4JI7H 3GR5A 1IBKH 4JI1H 4LFBH 1I94H 2UXCH 4LFAH 1J5EH 2Y3MA 2VQFH 1ODHA 4DR7H 2UUAH 4LF7H 4DV4H 2PT7G 2UUCH 1IBMH 1SEIA 4DR6H 4JV5H 4NZRM 1F0XA 5IT9W 4DUZH 2UUBH 4JI4H 4DV5H 1XMQH 4LF5H 2D9IA 1N34H 2E5LH 4DR1H 1FKAH 5A2QW 4DV7H 4G08A 4E9JA 5LL6b 4JI3H 4JYAH 4LF9H 5BR8H 4B3SH 4X62H 5DT9A 4LF8H 2ZM6H 4LF4H 3OETA 1N33H 5LMNH 4AQYH 1HNWH 4JI2H 1XNQH 1HNXH 1N32H 1X9ZA 4OX9H 3OSSD 4DR4H 4X64H 2VQEH 4NZTM 3J81W 2F4VH 4B3TH 4YY3H 3QD7X 4JI8H 4JI6H 4GKKH 5FLXW 4DV3H 5IWAH 4X65H 2UXBH 4X66H 2FPHX 4KHPH 1HNZH 1XMOH 4NXMH 2ZQEA 3GABA 3J80W 4YHHH 4NXNH 3J7AK 4OCHA 3KDKA 1XNRH 5LMUH 4GKJH 1IBLH 4LFCH 1AN7A 4DUYH 1N36H 4EC5A 4LF6H 1FJGH 1I6UA 4OD6A 3OTOH 4DV0H 4K0KH 3SB1A 3NCVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FAU A;  2VKC A;  4OCH A;  4OD6 A;  2ZQE A;  3QD7 X;  2D9I A; 
#chains in the Genus database with same CATH topology
 4NBQ A;  4DR2 H;  4DR3 H;  1WHR A;  4B3R H;  1WE8 A;  2O4C A;  3U1K A;  4LIJ A;  3EZJ A;  4DV2 H;  1PQX A;  1ZTG A;  5K36 G;  1UG8 A;  1HR0 H;  4JI0 H;  2HH3 A;  2UXD H;  2E3U A;  1Z2I A;  4B8C D;  4DV6 H;  1DTJ A;  1ZZJ A;  1X4M A;  4JI5 H;  4AM3 A;  3RF2 A;  3T1H H;  3T1Y H;  1S03 G;  2CTM A;  2M6Q A;  4DR5 H;  3L7Z C;  3JAM W;  2P2R A;  2UU9 H;  4PDB A;  4B3M H;  4WAN A;  2VKC A;  4H8A A;  4FJU A;  1DT4 A;  2FMR A;  2CTE A;  1ZZK A;  1K1G A;  2CTL A;  2JA9 A;  3KDG A;  2LF0 A;  4BA1 I;  2HH2 A;  1V9N A;  2K1H A;  3FAU A;  4DV1 H;  2HHH H;  4JI7 H;  3GR5 A;  2LTM A;  2MJH A;  4FJS A;  1IBK H;  4JI1 H;  2FFM A;  2ANR A;  4LFB H;  1I94 H;  2UXC H;  4LFA H;  1ODH A;  2Y3M A;  2VQF H;  1J5E H;  4DR7 H;  2UUA H;  4IFD G;  4LF7 H;  1X0A A;  4DV4 H;  2PT7 G;  2UUC H;  1IBM H;  1SEI A;  4DR6 H;  4JV5 H;  4NZR M;  1F0X A;  5IT9 W;  4DUZ H;  2UUB H;  2LTL A;  2BL5 A;  4JI4 H;  4DV5 H;  1XMQ H;  4LF5 H;  2D9I A;  1VIG A;  1N34 H;  2E5L H;  4DR1 H;  2CPQ A;  2JE6 I;  1EC6 A;  1FKA H;  5A2Q W;  4DV7 H;  4G08 A;  4E9J A;  5LL6 b;  4JI3 H;  4JYA H;  3UOE A;  2CWF A;  4OO1 G;  4LF9 H;  5BR8 H;  4B3S H;  1KHM A;  4X62 H;  5DT9 A;  2DGR A;  1MSZ A;  5C0X G;  2ZM6 H;  4LF8 H;  4LF4 H;  2PY9 A;  3OET A;  1N33 H;  1J5K A;  5LMN H;  2YQR A;  4AQY H;  1HNW H;  4JI2 H;  1XNQ H;  5JEA G;  1HNX H;  2QND A;  1N32 H;  1X9Z A;  4OX9 H;  2CTJ A;  3OSS D;  2CPM A;  4DR4 H;  1S20 A;  4X64 H;  2X06 A;  2VQE H;  4NZT M;  1VIH A;  2G8Y A;  2JZX A;  2OPV A;  3J81 W;  4JVH A;  2F4V H;  1WTJ A;  1TUA A;  2OPU A;  2BA0 A;  3QD7 X;  4YY3 H;  4B3T H;  2A1S A;  4JI8 H;  1XRH A;  4JI6 H;  2CTK A;  5FLX W;  4B8T A;  2NN6 G;  4GKK H;  4DV3 H;  5IWA H;  3VKE A;  4X65 H;  2UXB H;  2LRR A;  1VBI A;  4X66 H;  2JVZ A;  2FPH X;  4KHP H;  3V69 A;  1J4W A;  1HNZ H;  4WAL A;  1XMO H;  2ANN A;  3GKU A;  4JVY A;  1ZZI A;  2JEA I;  4NXM H;  2ZQE A;  3GAB A;  3J80 W;  2Z0S A;  4YHH H;  1NXU A;  3AEV B;  4NXN H;  3J7A K;  3I0P A;  4OCH A;  4AIM A;  3KDK A;  2JEB I;  1V8C A;  1WVN A;  1XNR H;  5LMU H;  4GKJ H;  1IBL H;  4LFC H;  1AN7 A;  2M8W A;  4QMF B;  4EC5 A;  4DUY H;  1N36 H;  4LF6 H;  4OD6 A;  1FJG H;  2AXY A;  1I6U A;  1X4N A;  4BA2 I;  2CTF A;  2CWH A;  3OTO H;  4DV0 H;  4K0K H;  3SB1 A;  3NCV A;  2PQU A; 
#chains in the Genus database with same CATH homology
 4DR2 H;  4DR3 H;  4B3R H;  2O4C A;  3EZJ A;  4DV2 H;  1HR0 H;  4JI0 H;  2UXD H;  4B8C D;  4DV6 H;  4JI5 H;  3RF2 A;  3T1H H;  3T1Y H;  1S03 G;  4DR5 H;  3JAM W;  2UU9 H;  4PDB A;  4B3M H;  2VKC A;  3KDG A;  2LF0 A;  2HHH H;  3FAU A;  4DV1 H;  4JI7 H;  3GR5 A;  1IBK H;  4JI1 H;  4LFB H;  1I94 H;  2UXC H;  4LFA H;  1J5E H;  2Y3M A;  2VQF H;  1ODH A;  4DR7 H;  2UUA H;  4LF7 H;  4DV4 H;  2PT7 G;  2UUC H;  1IBM H;  1SEI A;  4DR6 H;  4JV5 H;  4NZR M;  1F0X A;  5IT9 W;  4DUZ H;  2UUB H;  4JI4 H;  4DV5 H;  1XMQ H;  4LF5 H;  2D9I A;  1N34 H;  2E5L H;  4DR1 H;  1FKA H;  5A2Q W;  4DV7 H;  4G08 A;  4E9J A;  5LL6 b;  4JI3 H;  4JYA H;  4LF9 H;  5BR8 H;  4B3S H;  4X62 H;  5DT9 A;  4LF8 H;  2ZM6 H;  4LF4 H;  3OET A;  1N33 H;  5LMN H;  4AQY H;  1HNW H;  4JI2 H;  1XNQ H;  1HNX H;  1N32 H;  1X9Z A;  4OX9 H;  3OSS D;  4DR4 H;  4X64 H;  2VQE H;  4NZT M;  3J81 W;  2F4V H;  4B3T H;  4YY3 H;  3QD7 X;  4JI8 H;  4JI6 H;  4GKK H;  5FLX W;  4DV3 H;  5IWA H;  4X65 H;  2UXB H;  4X66 H;  2FPH X;  4KHP H;  1HNZ H;  1XMO H;  4NXM H;  2ZQE A;  3GAB A;  3J80 W;  4YHH H;  4NXN H;  3J7A K;  4OCH A;  3KDK A;  1XNR H;  5LMU H;  4GKJ H;  1IBL H;  4LFC H;  1AN7 A;  4DUY H;  1N36 H;  4EC5 A;  4LF6 H;  1FJG H;  1I6U A;  4OD6 A;  3OTO H;  4DV0 H;  4K0K H;  3SB1 A;  3NCV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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