3UOEA

The crystal structure of dehydrogenase from sinorhizobium meliloti
Total Genus 97
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
97
sequence length
339
structure length
339
Chain Sequence
LYFQSMMRLPPARLRNLSVALLEKRGVPADSARLQANLLLEAELRGLPSHGLQRLPLLLSRLDKGLANPTTRGNGTWRRASFLSVDGERGLGPVVMMDAMRVTRRILKETGLAIAAIRNANHMGMLAYYAEAAARDGLIGIVMSTSEALVHPFGGTQALIGTNPVAIGIPAAGHPFVLDLATSIVSMGKINNHAMRGLAIPPGWAVDRDGRATTDPHAAQAGAIAPFGDAKGYGLGLAIELLVAALAGSNLAPDVNGTLDDIHPANKGDLLILIDPSAGAGSIPALAAYLDRLRLSRPLDPTQPVAIPGDGARARRAAAAKTGIELPQPLFDHLTALEA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Dehydrogenase
publication title The crystal structure of dehydrogenase from Sinorhizobium meliloti
rcsb
source organism Sinorhizobium meliloti
total genus 97
structure length 339
sequence length 339
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-11-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02615 Ldh_2 Malate/L-lactate dehydrogenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1530.10 Mainly Alpha Orthogonal Bundle Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 3uoeA01
3.30.60.50 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Hypothetical oxidoreductase yiak; domain 3 3uoeA03
3.30.1370.60 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 Hypothetical oxidoreductase yiak; domain 2 3uoeA02
3I0PA 2CWHA 1X0AA 2G8YA 1VBIA 4FJSA 4FJUA 3UOEA 1WTJA 1NXUA 1V9NA 2X06A 4H8AA 2CWFA 1S20A 1Z2IA 1XRHA
chains in the Genus database with same CATH superfamily
3GABA 1YU6C 2N52A 1TUSA 1IBLH 1BMOA 1WGCA 4OCHA 4UXIA 2JA9A 4IFDG 3OXFA 2ANRA 2X06A 4DR1H 4E1RA 1W3SA 1SEIA 5CCMA 4JI8H 2ORWA 1SGPI 1UHAA 4HGUA 4B3MH 3FSXA 1ULNA 1LR9A 2M5XA 2Y3MA 2QPOA 4FKDA 1PCEA 4JI0H 2KCXA 3E2IA 2DIPA 2DKVA 2G8YA 1IY5A 1TURA 2JYYA 1P9ZA 2N71A 3KDKA 5A2QW 4WP4A 5LL6b 2XRCA 4B3SH 4PDBA 4K0KH 5E3QA 2JW6A 3R5BA 1PTQA 2LTMA 2RIJA 5C0XG 4GI3C 4DR7H 2WGCA 4LIJA 1SGNI 5IT9W 2JEAI 1TOTA 4LFAH 1N13A 1HPTA 2OPVA 1N34H 3E59A 2V53A 4FJUA 4DR6H 2E3UA 4AQYH 2CTJA 1Z2IA 3UEYA 1WGTA 2ORVA 1K7UA 2QQ0A 2M6QA 4DNCA 3TOBA 1XMQH 4KHPH 1XMOH 2ZM6H 2OZUA 1X9ZA 2BA0A 1HNXH 5E3PA 1V9NA 1ZZIA 4DV7H 1X4NA 1NXUA 3EZJA 4NBQA 2UU9H 1X0AA 1ZTGA 1H0ZA 5JHWC 4X62H 3UGDA 3VDUA 3GOXA 5J8CA 2LRRA 1DS3I 2ANNA 4FJSA 3RU0A 3KY9A 4JI3H 1PTRA 1AN7A 3JAMW 3J7AK 4DV0H 2ELIA 2B0UC 5FUVA 4QMFB 4JVYA 2O4CA 2VQFH 1ZZKA 4SGBI 5HI7A 3SEKC 1FAQA 4DR2H 2HHHH 1XNRH 4H8AA 3V69A 5K36G 4A24A 1TGSI 4G08A 3T1YH 4JYAH 1UUCA 2FPHX 2L8EA 1RFHA 2YQRA 1XNQH 1WKXA 3VDPA 2JE6I 1TBRR 4DV4H 4MPIA 3J80W 4LF4H 2E5LH 3OXGA 1UVGA 2WCYA 2KMPA 3J81W 2GKRI 2AXYA 2CTEA 1FARA 2LF0A 4BA2I 1M8CA 1S20A 1MSZA 1DS2I 3T1HH 1ULMA 4DUZH 3OL0A 4YY3H 4LF8H 1CGII 2CWGA 1X74A 1YTPA 1V1HA 2UXBH 1Q9BA 2P6AC 1MJAA 2GVIA 2FMRA 3D00A 4YHHH 1LR7A 2JZMA 4E9JA 1PQXA 1KBFA 5EX3A 3TO6A 2PQUA 1N32H 2RC4A 2X3TA 1W4RA 2JZXA 1WVNA 4OD6A 2VRWB 1N36H 4B3TH 2A1SA 2J87A 2JA1A 2CTFA 2OD1A 3TO7A 3VE5A 2VQEH 2LB7A 1XRHA 4NZTM 1CE3A 4WALA 1EC6A 2UUAH 2J9RA 2JEBI 1VIGA 1LR8A 4JI5H 1J4WA 2LEOA 1HEVA 3RF2A 1CSOI 2KMQA 4NXMH 3TJQA 4NZRM 4JVHA 1N33H 1P9GA 2N17A 3OTOH 1XX6A 2X52A 1BUSA 3HH2C 1PJUA 2K9HA 4JCVE 3QD7X 2M8WA 4X64H 2CTMA 3SGBI 5CCLA 1R0RI 3UFFA 2W0TA 2ERWA 1HJAI 4BA1I 1K7TA 3UOEA 4E1PA 4DR5H 2ZQEA 2K1HA 4LF9H 5FLXW 1FY7A 2ARPF 2PT7G 1KMAA 1K1GA 4JI2H 1MT1A 1V8CA 4DV2H 2Z0SA 2BUSA 2ROWA 4LF5H 2UXDH 5IWAH 2V1CA 1V1IA 1SGEI 2ODDA 1X4SA 4AM3A 2GIVA 1CHOI 1TBNA 4X66H 2HH2A 3VKEA 1IW4A 5LMUH 1IY6A 2YQPA 3OETA 4DV3H 1MJBA 3UGIA 1VIHA 2CWFA 3TO9A 5FUYA 2BL5A 5DT9A 1HR0H 4JI4H 3R5CA 3UEJA 4EC5A 1I6UA 1DT4A 1ODHA 2NU2I 3QAHA 2PY9A 1J5KA 4X65H 3OVOA 1TUAA 1TIHA 1WE8A 2YUUA 2GKVA 1KHMA 1AN1I 1TBOA 3L7ZC 5HQ8A 2SGFI 2JVZA 2MJHA 2DB6A 2FNFX 1WHRA 4B3RH 2UXCH 4WANA 3PDNA 1X4MA 3TOAA 2UVOA 2NU3I 4DV6H 1HDLA 4JI7H 2WVJA 1MJ9A 4B6DA 2VKCA 1TBQR 2F3CI 2UUBH 5FUWA 5BR8H 1KBEA 5EX0A 2FFMA 1UG8A 1FKAH 3FC3A 2KMRA 4JV5H 3CXLA 1K7VA 2NU4I 2PQ8A 2LUYA 4B8CD 2UUCH 2L7XA 4GKKH 4JI1H 4OVOA 5J8FA 1U5KA 2QQCA 1Y8FA 3FSYA 3R5DA 3NCVA 3SB1A 2B8TA 3R5AA 1J5EH 2CJSC 2OPUA 1FJGH 5JEAG 2SGPI 4UXJA 3OSSD 2NN6G 5LMNH 1ZZJA 4DUYH 1SGDI 4DV1H 1SGRI 1S03G 2LTLA 2NU1I 4DR4H 1DTJA 1VBIA 2QQEA 2SGQI 2A20A 1I94H 3FAUA 2Y0MA 2QQDA 1SGQI 2D9IA 4LF6H 2OVOA 4NXNH 3OXLA 1HNZH 4B8TA 1OMUA 2KMOA 1F0XA 4DV5H 2HH3A 4L9MA 2DGRA 1CT0I 2V1CC 2CTLA 4DR3H 3AEVB 3B4VC 1CT2I 3UGLA 3MEKA 4OO1G 1VDDA 2E5RA 1WTJA 4JI6H 5E3RA 2OU2A 2N1AB 1UVFA 3I0PA 1IBMH 2SGEI 4LF7H 9WGAA 2CPQA 2QNDA 1M8BA 3KDGA 5FUXA 1XBTA 4AMLA 1ULKA 2JXDA 3GKUA 5DAEA 2P2RA 2NU0I 1Z7KB 1SGYI 3U1KA 2CPMA 4AIMA 4GKJH 4LFCH 1FYBA 3GR5A 1Y1BA 4LFBH 1CGJI 4OX9H 1OMTA 1NUBA 1HNWH 2UZ3A 2CWHA 1CT4I 4UXHA 3BJIA 3QTLD 1OVOA 2GKTI 1IBKH 2ENNA 2CTKA 7WGAA 3QWPA 2F4VH 1PPFI 2E73A 1R79A 3SGQI 1Y1CA 1OYVI 2SGDI 2ENZA 1XA6A
chains in the Genus database with same CATH topology
3I0PA 2CWHA 1X0AA 2G8YA 1VBIA 4FJSA 4FJUA 3UOEA 1WTJA 1NXUA 1V9NA 2X06A 4H8AA 2CWFA 1S20A 1Z2IA 1XRHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3I0P A;  2CWH A;  1X0A A;  2G8Y A;  1VBI A;  4FJS A;  4FJU A;  3UOE A;  1WTJ A;  1NXU A;  1V9N A;  2X06 A;  4H8A A;  2CWF A;  1S20 A;  1Z2I A;  1XRH A; 
#chains in the Genus database with same CATH topology
 3GAB A;  1YU6 C;  2N52 A;  1TUS A;  1IBL H;  1BMO A;  1WGC A;  4OCH A;  4UXI A;  2JA9 A;  4IFD G;  3OXF A;  2ANR A;  2X06 A;  4DR1 H;  4E1R A;  1W3S A;  1SEI A;  5CCM A;  4JI8 H;  2ORW A;  1SGP I;  1UHA A;  4HGU A;  4B3M H;  3FSX A;  1ULN A;  1LR9 A;  2M5X A;  2Y3M A;  2QPO A;  4FKD A;  1PCE A;  4JI0 H;  2KCX A;  3E2I A;  2DIP A;  2DKV A;  2G8Y A;  1IY5 A;  1TUR A;  2JYY A;  1P9Z A;  2N71 A;  3KDK A;  5A2Q W;  4WP4 A;  5LL6 b;  2XRC A;  4B3S H;  4PDB A;  4K0K H;  5E3Q A;  2JW6 A;  3R5B A;  1PTQ A;  2LTM A;  2RIJ A;  5C0X G;  4GI3 C;  4DR7 H;  2WGC A;  4LIJ A;  1SGN I;  5IT9 W;  2JEA I;  1TOT A;  4LFA H;  1N13 A;  1HPT A;  2OPV A;  1N34 H;  3E59 A;  2V53 A;  4FJU A;  4DR6 H;  2E3U A;  4AQY H;  2CTJ A;  1Z2I A;  3UEY A;  1WGT A;  2ORV A;  1K7U A;  2QQ0 A;  2M6Q A;  4DNC A;  3TOB A;  1XMQ H;  4KHP H;  1XMO H;  2ZM6 H;  2OZU A;  1X9Z A;  2BA0 A;  1HNX H;  5E3P A;  1V9N A;  1ZZI A;  4DV7 H;  1X4N A;  1NXU A;  3EZJ A;  4NBQ A;  2UU9 H;  1X0A A;  1ZTG A;  1H0Z A;  5JHW C;  4X62 H;  3UGD A;  3VDU A;  3GOX A;  5J8C A;  2LRR A;  1DS3 I;  2ANN A;  4FJS A;  3RU0 A;  3KY9 A;  4JI3 H;  1PTR A;  1AN7 A;  3JAM W;  3J7A K;  4DV0 H;  2ELI A;  2B0U C;  5FUV A;  4QMF B;  4JVY A;  2O4C A;  2VQF H;  1ZZK A;  4SGB I;  5HI7 A;  3SEK C;  1FAQ A;  4DR2 H;  2HHH H;  1XNR H;  4H8A A;  3V69 A;  5K36 G;  4A24 A;  1TGS I;  4G08 A;  3T1Y H;  4JYA H;  1UUC A;  2FPH X;  2L8E A;  1RFH A;  2YQR A;  1XNQ H;  1WKX A;  3VDP A;  2JE6 I;  1TBR R;  4DV4 H;  4MPI A;  3J80 W;  4LF4 H;  2E5L H;  3OXG A;  1UVG A;  2WCY A;  2KMP A;  3J81 W;  2GKR I;  2AXY A;  2CTE A;  1FAR A;  2LF0 A;  4BA2 I;  1M8C A;  1S20 A;  1MSZ A;  1DS2 I;  3T1H H;  1ULM A;  4DUZ H;  3OL0 A;  4YY3 H;  4LF8 H;  1CGI I;  2CWG A;  1X74 A;  1YTP A;  1V1H A;  2UXB H;  1Q9B A;  2P6A C;  1MJA A;  2GVI A;  2FMR A;  3D00 A;  4YHH H;  1LR7 A;  2JZM A;  4E9J A;  1PQX A;  1KBF A;  5EX3 A;  3TO6 A;  2PQU A;  1N32 H;  2RC4 A;  2X3T A;  1W4R A;  2JZX A;  1WVN A;  4OD6 A;  2VRW B;  1N36 H;  4B3T H;  2A1S A;  2J87 A;  2JA1 A;  2CTF A;  2OD1 A;  3TO7 A;  3VE5 A;  2VQE H;  2LB7 A;  1XRH A;  4NZT M;  1CE3 A;  4WAL A;  1EC6 A;  2UUA H;  2J9R A;  2JEB I;  1VIG A;  1LR8 A;  4JI5 H;  1J4W A;  2LEO A;  1HEV A;  3RF2 A;  1CSO I;  2KMQ A;  4NXM H;  3TJQ A;  4NZR M;  4JVH A;  1N33 H;  1P9G A;  2N17 A;  3OTO H;  1XX6 A;  2X52 A;  1BUS A;  3HH2 C;  1PJU A;  2K9H A;  4JCV E;  3QD7 X;  2M8W A;  4X64 H;  2CTM A;  3SGB I;  5CCL A;  1R0R I;  3UFF A;  2W0T A;  2ERW A;  1HJA I;  4BA1 I;  1K7T A;  3UOE A;  4E1P A;  4DR5 H;  2ZQE A;  2K1H A;  4LF9 H;  5FLX W;  1FY7 A;  2ARP F;  2PT7 G;  1KMA A;  1K1G A;  4JI2 H;  1MT1 A;  1V8C A;  4DV2 H;  2Z0S A;  2BUS A;  2ROW A;  4LF5 H;  2UXD H;  5IWA H;  2V1C A;  1V1I A;  1SGE I;  2ODD A;  1X4S A;  4AM3 A;  2GIV A;  1CHO I;  1TBN A;  4X66 H;  2HH2 A;  3VKE A;  1IW4 A;  5LMU H;  1IY6 A;  2YQP A;  3OET A;  4DV3 H;  1MJB A;  3UGI A;  1VIH A;  2CWF A;  3TO9 A;  5FUY A;  2BL5 A;  5DT9 A;  1HR0 H;  4JI4 H;  3R5C A;  3UEJ A;  4EC5 A;  1I6U A;  1DT4 A;  1ODH A;  2NU2 I;  3QAH A;  2PY9 A;  1J5K A;  4X65 H;  3OVO A;  1TUA A;  1TIH A;  1WE8 A;  2YUU A;  2GKV A;  1KHM A;  1AN1 I;  1TBO A;  3L7Z C;  5HQ8 A;  2SGF I;  2JVZ A;  2MJH A;  2DB6 A;  2FNF X;  1WHR A;  4B3R H;  2UXC H;  4WAN A;  3PDN A;  1X4M A;  3TOA A;  2UVO A;  2NU3 I;  4DV6 H;  1HDL A;  4JI7 H;  2WVJ A;  1MJ9 A;  4B6D A;  2VKC A;  1TBQ R;  2F3C I;  2UUB H;  5FUW A;  5BR8 H;  1KBE A;  5EX0 A;  2FFM A;  1UG8 A;  1FKA H;  3FC3 A;  2KMR A;  4JV5 H;  3CXL A;  1K7V A;  2NU4 I;  2PQ8 A;  2LUY A;  4B8C D;  2UUC H;  2L7X A;  4GKK H;  4JI1 H;  4OVO A;  5J8F A;  1U5K A;  2QQC A;  1Y8F A;  3FSY A;  3R5D A;  3NCV A;  3SB1 A;  2B8T A;  3R5A A;  1J5E H;  2CJS C;  2OPU A;  1FJG H;  5JEA G;  2SGP I;  4UXJ A;  3OSS D;  2NN6 G;  5LMN H;  1ZZJ A;  4DUY H;  1SGD I;  4DV1 H;  1SGR I;  1S03 G;  2LTL A;  2NU1 I;  4DR4 H;  1DTJ A;  1VBI A;  2QQE A;  2SGQ I;  2A20 A;  1I94 H;  3FAU A;  2Y0M A;  2QQD A;  1SGQ I;  2D9I A;  4LF6 H;  2OVO A;  4NXN H;  3OXL A;  1HNZ H;  4B8T A;  1OMU A;  2KMO A;  1F0X A;  4DV5 H;  2HH3 A;  4L9M A;  2DGR A;  1CT0 I;  2V1C C;  2CTL A;  4DR3 H;  3AEV B;  3B4V C;  1CT2 I;  3UGL A;  3MEK A;  4OO1 G;  1VDD A;  2E5R A;  1WTJ A;  4JI6 H;  5E3R A;  2OU2 A;  2N1A B;  1UVF A;  3I0P A;  1IBM H;  2SGE I;  4LF7 H;  9WGA A;  2CPQ A;  2QND A;  1M8B A;  3KDG A;  5FUX A;  1XBT A;  4AML A;  1ULK A;  2JXD A;  3GKU A;  5DAE A;  2P2R A;  2NU0 I;  1Z7K B;  1SGY I;  3U1K A;  2CPM A;  4AIM A;  4GKJ H;  4LFC H;  1FYB A;  3GR5 A;  1Y1B A;  4LFB H;  1CGJ I;  4OX9 H;  1OMT A;  1NUB A;  1HNW H;  2UZ3 A;  2CWH A;  1CT4 I;  4UXH A;  3BJI A;  3QTL D;  1OVO A;  2GKT I;  1IBK H;  2ENN A;  2CTK A;  7WGA A;  3QWP A;  2F4V H;  1PPF I;  2E73 A;  1R79 A;  3SGQ I;  1Y1C A;  1OYV I;  2SGD I;  2ENZ A;  1XA6 A; 
#chains in the Genus database with same CATH homology
 3I0P A;  2CWH A;  1X0A A;  2G8Y A;  1VBI A;  4FJS A;  4FJU A;  3UOE A;  1WTJ A;  1NXU A;  1V9N A;  2X06 A;  4H8A A;  2CWF A;  1S20 A;  1Z2I A;  1XRH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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