3UOEA

The crystal structure of dehydrogenase from sinorhizobium meliloti
Total Genus 97
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
97
sequence length
339
structure length
339
Chain Sequence
LYFQSMMRLPPARLRNLSVALLEKRGVPADSARLQANLLLEAELRGLPSHGLQRLPLLLSRLDKGLANPTTRGNGTWRRASFLSVDGERGLGPVVMMDAMRVTRRILKETGLAIAAIRNANHMGMLAYYAEAAARDGLIGIVMSTSEALVHPFGGTQALIGTNPVAIGIPAAGHPFVLDLATSIVSMGKINNHAMRGLAIPPGWAVDRDGRATTDPHAAQAGAIAPFGDAKGYGLGLAIELLVAALAGSNLAPDVNGTLDDIHPANKGDLLILIDPSAGAGSIPALAAYLDRLRLSRPLDPTQPVAIPGDGARARRAAAAKTGIELPQPLFDHLTALEA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The crystal structure of dehydrogenase from Sinorhizobium meliloti
rcsb
source organism Sinorhizobium meliloti
molecule tags Oxidoreductase
molecule keywords Dehydrogenase
total genus 97
structure length 339
sequence length 339
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-11-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02615 Ldh_2 Malate/L-lactate dehydrogenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1530.10 Mainly Alpha Orthogonal Bundle Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 3uoeA01
3.30.60.50 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Hypothetical oxidoreductase yiak; domain 3 3uoeA03
3.30.1370.60 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 Hypothetical oxidoreductase yiak; domain 2 3uoeA02
3UOEA 3I0PA 1NXUA 1Z2IA 1V9NA 1XRHA 1X0AA 2CWFA 2G8YA 4H8AA 1S20A 1VBIA 2CWHA 2X06A 4FJUA 4FJSA 1WTJA
chains in the Genus database with same CATH superfamily
2DKVA 4KHPH 1NUBA 1V1HA 5LMUH 1TOTA 3VDPA 1X4MA 2P6AC 3T1YH 2UXDH 2UVOA 2X52A 2ERWA 3FSYA 1YU6C 1I94H 2N71A 4X65H 4DV4H 2VQFH 4LFCH 5IWAH 1PTQA 2F3CI 2KMRA 3V69A 1TURA 2ORVA 3TJQA 1IW4A 1PJUA 2AXYA 2KMQA 2N1AB 2CJSC 1IBLH 3OETA 1K7UA 1N34H 3TO9A 1J4WA 1ZTGA 3KY9A 4UXJA 1ZZKA 5BR8H 1HDLA 2CTFA 4DV5H 2CWFA 4DR4H 4PDBA 4DR6H 2UUCH 2NU3I 2OU2A 3SB1A 1FY7A 4B3TH 3SEKC 3MEKA 4X66H 4JVHA 2E5RA 2FNFX 3R5BA 2KMPA 1DS3I 1IY5A 3UOEA 2UXCH 4H8AA 4A24A 2ODDA 1N32H 1XMQH 4JI8H 1UHAA 2OVOA 4K0KH 4B3RH 3QAHA 1W4RA 2QQDA 4WP4A 2OZUA 1WTJA 5DT9A 4MPIA 2N17A 5HQ8A 2CTEA 3RU0A 3QTLD 2PQUA 3SGQI 1TUSA 4AIMA 4DV2H 2KMOA 1KMAA 4NBQA 4B8TA 2L8EA 1ULNA 4X62H 4FJSA 1EC6A 1VIGA 1TIHA 2ELIA 2LB7A 1NXUA 1R79A 2CTKA 1WE8A 3FC3A 3SGBI 5CCMA 1H0ZA 3E2IA 2JXDA 1FKAH 3J81W 2UUAH 2UXBH 4DV7H 1HNXH 1R0RI 4OVOA 2UZ3A 2FFMA 2LEOA 1WGTA 5IT9W 3OXFA 2JYYA 5JEAG 2XRCA 2CTMA 5FUYA 5E3PA 4DUZH 4B3MH 2JE6I 4JI6H 4LF4H 1AN1I 2ENNA 3VKEA 5E3QA 1LR7A 3J80W 1OYVI 3EZJA 1MSZA 4DR3H 4DR5H 2OD1A 2OPUA 4LF7H 2ROWA 1XA6A 4BA1I 5FLXW 2JA1A 2ORWA 2NU0I 2M5XA 2FPHX 2ARPF 2Y0MA 2SGEI 3GOXA 2GVIA 2QQEA 1ZZJA 1UVGA 1CGII 2LUYA 3J7AK 1PQXA 1HNWH 1IBMH 2M8WA 5K36G 2GKRI 5C0XG 1IBKH 2CTJA 2ANRA 4JI5H 3GABA 1ODHA 2ZQEA 4IFDG 2A20A 5HI7A 2SGDI 5J8FA 1ULKA 1DTJA 1WHRA 4BA2I 4DR1H 3R5DA 2JZMA 4WALA 1OMUA 3VE5A 3U1KA 4GI3C 1Y1CA 1FJGH 5A2QW 1CT0I 4JI1H 2Z0SA 2V53A 1DS2I 2DB6A 2YQRA 2HH3A 5FUXA 1TBRR 3UGIA 2LF0A 2NN6G 3OVOA 1V8CA 2UUBH 1HR0H 1MJ9A 2B8TA 2L7XA 1XNQH 1XMOH 1J5EH 4B3SH 1CE3A 1BUSA 4DV3H 7WGAA 2Y3MA 1V1IA 3D00A 2NU4I 1X9ZA 2BL5A 1CT2I 3UEYA 4DR7H 1UVFA 4OO1G 3B4VC 2OPVA 5FUVA 1HPTA 1SGPI 4NZRM 3UEJA 1J5KA 1HEVA 4QMFB 1N36H 3OXGA 2J87A 4OX9H 2YQPA 2ENZA 2W0TA 4L9MA 1IY6A 4WANA 2SGFI 4LF5H 4UXIA 2MJHA 4DV0H 2GIVA 4LIJA 2LTLA 1K7VA 2PT7G 1TBOA 4YHHH 1Y8FA 2CPMA 3KDKA 2QPOA 3OXLA 3OTOH 1Z2IA 3UGLA 2UU9H 1SGYI 4LF8H 1FYBA 5FUWA 3KDGA 4FJUA 1XX6A 1FARA 1UG8A 2D9IA 2M6QA 1SGQI 1X0AA 1N13A 1UUCA 4AMLA 2E5LH 1VIHA 2K1HA 2VQEH 2PQ8A 4JVYA 1HNZH 2X3TA 4GKJH 1LR8A 1DT4A 3I0PA 1CT4I 2E3UA 1K7TA 4DR2H 4YY3H 4LF9H 5JHWC 2WGCA 4JCVE 1PCEA 4DV1H 4JI0H 3GKUA 4UXHA 1KHMA 4AM3A 3FSXA 2JVZA 2JEBI 1Q9BA 2DIPA 3TOBA 2JW6A 1X4SA 2QQ0A 2CWHA 2X06A 2BA0A 2O4CA 2WCYA 1RFHA 2LTMA 3CXLA 1F0XA 1CSOI 1SGDI 2LRRA 4JYAH 4LFBH 1SGEI 3UFFA 2JA9A 1V9NA 4E1PA 1TBNA 4NZTM 5E3RA 3OSSD 1Y1BA 1HJAI 1X74A 2YUUA 1SGNI 2WVJA 2KCXA 2PY9A 4OD6A 2J9RA 3HH2C 1KBFA 3VDUA 1TUAA 1OVOA 3QWPA 1VBIA 3QD7X 1Z7KB 2GKVA 1XBTA 1XRHA 1MJBA 1N33H 3R5CA 1CGJI 2F4VH 4B8CD 4DV6H 2P2RA 2SGQI 3TOAA 2QNDA 1XNRH 2QQCA 3BJIA 1I6UA 2RC4A 4DUYH 1S20A 1X4NA 2ANNA 3TO7A 1FAQA 1SGRI 1K1GA 5LL6b 1W3SA 2DGRA 1M8BA 4E1RA 5J8CA 3TO6A 4EC5A 2V1CA 2CPQA 9WGAA 5EX0A 4E9JA 5DAEA 2JEAI 1U5KA 1WGCA 1CHOI 1M8CA 2RIJA 4JV5H 1S03G 2V1CC 4JI4H 3RF2A 1YTPA 4OCHA 3T1HH 2NU1I 1PTRA 4G08A 1ZZIA 1VDDA 1PPFI 4JI3H 3AEVB 1MJAA 1TGSI 5CCLA 2CWGA 4JI7H 2B0UC 1WVNA 1LR9A 3FAUA 1TBQR 5EX3A 2JZXA 2HH2A 3NCVA 2G8YA 2K9HA 4FKDA 1AN7A 1P9GA 4HGUA 2HHHH 4B6DA 2VKCA 2N52A 1SEIA 1WKXA 2NU2I 2CTLA 1MT1A 3JAMW 1OMTA 2VRWB 4SGBI 1KBEA 4AQYH 1P9ZA 3L7ZC 3OL0A 3UGDA 2BUSA 2ZM6H 1BMOA 4LFAH 1ULMA 4DNCA 4JI2H 3R5AA 3E59A 4X64H 2GKTI 4NXNH 2SGPI 3PDNA 4GKKH 4NXMH 2FMRA 2A1SA 5LMNH 2E73A 4LF6H 3GR5A
chains in the Genus database with same CATH topology
3UOEA 3I0PA 1NXUA 1Z2IA 1V9NA 1XRHA 1X0AA 2CWFA 2G8YA 4H8AA 1S20A 1VBIA 2CWHA 2X06A 4FJUA 4FJSA 1WTJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3UOE A;  3I0P A;  1NXU A;  1Z2I A;  1V9N A;  1XRH A;  1X0A A;  2CWF A;  2G8Y A;  4H8A A;  1S20 A;  1VBI A;  2CWH A;  2X06 A;  4FJU A;  4FJS A;  1WTJ A; 
#chains in the Genus database with same CATH topology
 2DKV A;  4KHP H;  1NUB A;  1V1H A;  5LMU H;  1TOT A;  3VDP A;  1X4M A;  2P6A C;  3T1Y H;  2UXD H;  2UVO A;  2X52 A;  2ERW A;  3FSY A;  1YU6 C;  1I94 H;  2N71 A;  4X65 H;  4DV4 H;  2VQF H;  4LFC H;  5IWA H;  1PTQ A;  2F3C I;  2KMR A;  3V69 A;  1TUR A;  2ORV A;  3TJQ A;  1IW4 A;  1PJU A;  2AXY A;  2KMQ A;  2N1A B;  2CJS C;  1IBL H;  3OET A;  1K7U A;  1N34 H;  3TO9 A;  1J4W A;  1ZTG A;  3KY9 A;  4UXJ A;  1ZZK A;  5BR8 H;  1HDL A;  2CTF A;  4DV5 H;  2CWF A;  4DR4 H;  4PDB A;  4DR6 H;  2UUC H;  2NU3 I;  2OU2 A;  3SB1 A;  1FY7 A;  4B3T H;  3SEK C;  3MEK A;  4X66 H;  4JVH A;  2E5R A;  2FNF X;  3R5B A;  2KMP A;  1DS3 I;  1IY5 A;  3UOE A;  2UXC H;  4H8A A;  4A24 A;  2ODD A;  1N32 H;  1XMQ H;  4JI8 H;  1UHA A;  2OVO A;  4K0K H;  4B3R H;  3QAH A;  1W4R A;  2QQD A;  4WP4 A;  2OZU A;  1WTJ A;  5DT9 A;  4MPI A;  2N17 A;  5HQ8 A;  2CTE A;  3RU0 A;  3QTL D;  2PQU A;  3SGQ I;  1TUS A;  4AIM A;  4DV2 H;  2KMO A;  1KMA A;  4NBQ A;  4B8T A;  2L8E A;  1ULN A;  4X62 H;  4FJS A;  1EC6 A;  1VIG A;  1TIH A;  2ELI A;  2LB7 A;  1NXU A;  1R79 A;  2CTK A;  1WE8 A;  3FC3 A;  3SGB I;  5CCM A;  1H0Z A;  3E2I A;  2JXD A;  1FKA H;  3J81 W;  2UUA H;  2UXB H;  4DV7 H;  1HNX H;  1R0R I;  4OVO A;  2UZ3 A;  2FFM A;  2LEO A;  1WGT A;  5IT9 W;  3OXF A;  2JYY A;  5JEA G;  2XRC A;  2CTM A;  5FUY A;  5E3P A;  4DUZ H;  4B3M H;  2JE6 I;  4JI6 H;  4LF4 H;  1AN1 I;  2ENN A;  3VKE A;  5E3Q A;  1LR7 A;  3J80 W;  1OYV I;  3EZJ A;  1MSZ A;  4DR3 H;  4DR5 H;  2OD1 A;  2OPU A;  4LF7 H;  2ROW A;  1XA6 A;  4BA1 I;  5FLX W;  2JA1 A;  2ORW A;  2NU0 I;  2M5X A;  2FPH X;  2ARP F;  2Y0M A;  2SGE I;  3GOX A;  2GVI A;  2QQE A;  1ZZJ A;  1UVG A;  1CGI I;  2LUY A;  3J7A K;  1PQX A;  1HNW H;  1IBM H;  2M8W A;  5K36 G;  2GKR I;  5C0X G;  1IBK H;  2CTJ A;  2ANR A;  4JI5 H;  3GAB A;  1ODH A;  2ZQE A;  4IFD G;  2A20 A;  5HI7 A;  2SGD I;  5J8F A;  1ULK A;  1DTJ A;  1WHR A;  4BA2 I;  4DR1 H;  3R5D A;  2JZM A;  4WAL A;  1OMU A;  3VE5 A;  3U1K A;  4GI3 C;  1Y1C A;  1FJG H;  5A2Q W;  1CT0 I;  4JI1 H;  2Z0S A;  2V53 A;  1DS2 I;  2DB6 A;  2YQR A;  2HH3 A;  5FUX A;  1TBR R;  3UGI A;  2LF0 A;  2NN6 G;  3OVO A;  1V8C A;  2UUB H;  1HR0 H;  1MJ9 A;  2B8T A;  2L7X A;  1XNQ H;  1XMO H;  1J5E H;  4B3S H;  1CE3 A;  1BUS A;  4DV3 H;  7WGA A;  2Y3M A;  1V1I A;  3D00 A;  2NU4 I;  1X9Z A;  2BL5 A;  1CT2 I;  3UEY A;  4DR7 H;  1UVF A;  4OO1 G;  3B4V C;  2OPV A;  5FUV A;  1HPT A;  1SGP I;  4NZR M;  3UEJ A;  1J5K A;  1HEV A;  4QMF B;  1N36 H;  3OXG A;  2J87 A;  4OX9 H;  2YQP A;  2ENZ A;  2W0T A;  4L9M A;  1IY6 A;  4WAN A;  2SGF I;  4LF5 H;  4UXI A;  2MJH A;  4DV0 H;  2GIV A;  4LIJ A;  2LTL A;  1K7V A;  2PT7 G;  1TBO A;  4YHH H;  1Y8F A;  2CPM A;  3KDK A;  2QPO A;  3OXL A;  3OTO H;  1Z2I A;  3UGL A;  2UU9 H;  1SGY I;  4LF8 H;  1FYB A;  5FUW A;  3KDG A;  4FJU A;  1XX6 A;  1FAR A;  1UG8 A;  2D9I A;  2M6Q A;  1SGQ I;  1X0A A;  1N13 A;  1UUC A;  4AML A;  2E5L H;  1VIH A;  2K1H A;  2VQE H;  2PQ8 A;  4JVY A;  1HNZ H;  2X3T A;  4GKJ H;  1LR8 A;  1DT4 A;  3I0P A;  1CT4 I;  2E3U A;  1K7T A;  4DR2 H;  4YY3 H;  4LF9 H;  5JHW C;  2WGC A;  4JCV E;  1PCE A;  4DV1 H;  4JI0 H;  3GKU A;  4UXH A;  1KHM A;  4AM3 A;  3FSX A;  2JVZ A;  2JEB I;  1Q9B A;  2DIP A;  3TOB A;  2JW6 A;  1X4S A;  2QQ0 A;  2CWH A;  2X06 A;  2BA0 A;  2O4C A;  2WCY A;  1RFH A;  2LTM A;  3CXL A;  1F0X A;  1CSO I;  1SGD I;  2LRR A;  4JYA H;  4LFB H;  1SGE I;  3UFF A;  2JA9 A;  1V9N A;  4E1P A;  1TBN A;  4NZT M;  5E3R A;  3OSS D;  1Y1B A;  1HJA I;  1X74 A;  2YUU A;  1SGN I;  2WVJ A;  2KCX A;  2PY9 A;  4OD6 A;  2J9R A;  3HH2 C;  1KBF A;  3VDU A;  1TUA A;  1OVO A;  3QWP A;  1VBI A;  3QD7 X;  1Z7K B;  2GKV A;  1XBT A;  1XRH A;  1MJB A;  1N33 H;  3R5C A;  1CGJ I;  2F4V H;  4B8C D;  4DV6 H;  2P2R A;  2SGQ I;  3TOA A;  2QND A;  1XNR H;  2QQC A;  3BJI A;  1I6U A;  2RC4 A;  4DUY H;  1S20 A;  1X4N A;  2ANN A;  3TO7 A;  1FAQ A;  1SGR I;  1K1G A;  5LL6 b;  1W3S A;  2DGR A;  1M8B A;  4E1R A;  5J8C A;  3TO6 A;  4EC5 A;  2V1C A;  2CPQ A;  9WGA A;  5EX0 A;  4E9J A;  5DAE A;  2JEA I;  1U5K A;  1WGC A;  1CHO I;  1M8C A;  2RIJ A;  4JV5 H;  1S03 G;  2V1C C;  4JI4 H;  3RF2 A;  1YTP A;  4OCH A;  3T1H H;  2NU1 I;  1PTR A;  4G08 A;  1ZZI A;  1VDD A;  1PPF I;  4JI3 H;  3AEV B;  1MJA A;  1TGS I;  5CCL A;  2CWG A;  4JI7 H;  2B0U C;  1WVN A;  1LR9 A;  3FAU A;  1TBQ R;  5EX3 A;  2JZX A;  2HH2 A;  3NCV A;  2G8Y A;  2K9H A;  4FKD A;  1AN7 A;  1P9G A;  4HGU A;  2HHH H;  4B6D A;  2VKC A;  2N52 A;  1SEI A;  1WKX A;  2NU2 I;  2CTL A;  1MT1 A;  3JAM W;  1OMT A;  2VRW B;  4SGB I;  1KBE A;  4AQY H;  1P9Z A;  3L7Z C;  3OL0 A;  3UGD A;  2BUS A;  2ZM6 H;  1BMO A;  4LFA H;  1ULM A;  4DNC A;  4JI2 H;  3R5A A;  3E59 A;  4X64 H;  2GKT I;  4NXN H;  2SGP I;  3PDN A;  4GKK H;  4NXM H;  2FMR A;  2A1S A;  5LMN H;  2E73 A;  4LF6 H;  3GR5 A; 
#chains in the Genus database with same CATH homology
 3UOE A;  3I0P A;  1NXU A;  1Z2I A;  1V9N A;  1XRH A;  1X0A A;  2CWF A;  2G8Y A;  4H8A A;  1S20 A;  1VBI A;  2CWH A;  2X06 A;  4FJU A;  4FJS A;  1WTJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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