3UOEA

The crystal structure of dehydrogenase from sinorhizobium meliloti
Total Genus 97
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
97
sequence length
339
structure length
339
Chain Sequence
LYFQSMMRLPPARLRNLSVALLEKRGVPADSARLQANLLLEAELRGLPSHGLQRLPLLLSRLDKGLANPTTRGNGTWRRASFLSVDGERGLGPVVMMDAMRVTRRILKETGLAIAAIRNANHMGMLAYYAEAAARDGLIGIVMSTSEALVHPFGGTQALIGTNPVAIGIPAAGHPFVLDLATSIVSMGKINNHAMRGLAIPPGWAVDRDGRATTDPHAAQAGAIAPFGDAKGYGLGLAIELLVAALAGSNLAPDVNGTLDDIHPANKGDLLILIDPSAGAGSIPALAAYLDRLRLSRPLDPTQPVAIPGDGARARRAAAAKTGIELPQPLFDHLTALEA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Dehydrogenase
publication title The crystal structure of dehydrogenase from Sinorhizobium meliloti
rcsb
source organism Sinorhizobium meliloti
total genus 97
structure length 339
sequence length 339
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-11-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02615 Ldh_2 Malate/L-lactate dehydrogenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1530.10 Mainly Alpha Orthogonal Bundle Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 3uoeA01
3.30.60.50 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Hypothetical oxidoreductase yiak; domain 3 3uoeA03
3.30.1370.60 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 Hypothetical oxidoreductase yiak; domain 2 3uoeA02
1XRHA 1NXUA 1Z2IA 1S20A 1V9NA 1X0AA 2CWFA 2X06A 2CWHA 2G8YA 4FJSA 3UOEA 1VBIA 1WTJA 3I0PA 4H8AA 4FJUA
chains in the Genus database with same CATH superfamily
2P6AC 2CWGA 2V1CC 4AMLA 1J4WA 1YU6C 1VIGA 1MT1A 2B8TA 1X0AA 1CT2I 2PT7G 2PQ8A 4JI7H 4UXIA 3GKUA 1FARA 4FKDA 1F0XA 3J80W 1CGII 1HPTA 1Q9BA 2SGQI 1UHAA 1N33H 1HNWH 4QMFB 2FNFX 4YY3H 3I0PA 1IBMH 4LIJA 5FUYA 2PY9A 3TO9A 1X4NA 2ROWA 4GI3C 1WGCA 2V1CA 5FUVA 2G8YA 2YQRA 4DV6H 2DKVA 2JA9A 2ARPF 1XRHA 5CCMA 2UUBH 2N1AB 4NZRM 3UGIA 4B3TH 1IY6A 2N52A 2JEBI 3GABA 1MJAA 2LEOA 3TJQA 5J8FA 4B3MH 1UUCA 3R5DA 2JZXA 2CTLA 1IBKH 1IW4A 1K1GA 4B3SH 1WHRA 4EC5A 2B0UC 2GVIA 2UXBH 3JAMW 1CE3A 2M8WA 4JI5H 2Y0MA 1PJUA 3KDGA 2JVZA 1IY5A 1X4SA 2CWHA 3R5CA 1S20A 2J9RA 2LTLA 1TGSI 3CXLA 1DS2I 1LR7A 1YTPA 3FC3A 5IT9W 5K36G 4JI1H 1K7VA 2CJSC 1RFHA 2CTEA 1SGQI 3BJIA 2F3CI 4DV5H 2GKTI 3E59A 4OO1G 4HGUA 2E3UA 2E5LH 2GIVA 2N17A 2UU9H 1PPFI 1SGDI 1SGRI 2P2RA 3UEYA 2ORWA 7WGAA 4DV7H 2SGEI 2FMRA 4A24A 1MSZA 1Y8FA 4B3RH 1ZZJA 4JI3H 3UGLA 2GKRI 1MJBA 1X4MA 1PTQA 1SGPI 5DAEA 2UVOA 5IWAH 1I6UA 2ODDA 2CTKA 4DNCA 2M6QA 4NXNH 3GOXA 2YUUA 4LFBH 2CTFA 1SGNI 1X74A 2O4CA 4LF5H 3RU0A 3R5BA 4OD6A 2F4VH 1M8CA 3TO7A 4JI8H 5C0XG 3QD7X 3SEKC 2QNDA 2DIPA 4DV3H 3J7AK 1FY7A 1KHMA 1OYVI 1PTRA 1ZZKA 2PQUA 4DV1H 1V9NA 5LMNH 1W3SA 3R5AA 3EZJA 3E2IA 2VKCA 4DUZH 3QAHA 1ZTGA 1HDLA 1V1IA 3AEVB 1TBNA 2UXCH 4DR7H 1P9GA 1DT4A 4FJSA 3UOEA 4DV4H 4FJUA 1HR0H 1R79A 3TO6A 3OXGA 4JI2H 2UXDH 3OTOH 2WCYA 2VQEH 2LTMA 1IBLH 4B6DA 4OX9H 5E3QA 1KBEA 1XBTA 4G08A 4WANA 2K1HA 2FPHX 4JI0H 4JVYA 2BA0A 1TBRR 3VDPA 4IFDG 2FFMA 1WTJA 4JCVE 2SGDI 1Y1CA 2CTJA 5DT9A 4PDBA 4YHHH 1NUBA 1N32H 2HH3A 1BUSA 4NZTM 4GKJH 3OVOA 3D00A 2SGFI 5FLXW 5A2QW 4X64H 2VRWB 4NXMH 1TIHA 4X66H 2OD1A 1XX6A 4OCHA 2XRCA 1V8CA 1WGTA 2D9IA 2KMPA 4E1RA 4DR1H 3KDKA 2SGPI 2OPUA 9WGAA 4LF9H 4GKKH 1CGJI 2OU2A 2W0TA 2E73A 1UVFA 3SGQI 2ANRA 1EC6A 1ULKA 4H8AA 1PCEA 3OL0A 2K9HA 3VDUA 2NU2I 3B4VC 2LF0A 3T1YH 1TUAA 1FAQA 1K7TA 5HI7A 2JYYA 2KMOA 5BR8H 2ZM6H 2OPVA 1K7UA 1VDDA 1HNZH 2ANNA 2A1SA 4DUYH 1ODHA 3SB1A 1CSOI 2UZ3A 2X52A 2LRRA 1U5KA 4DR3H 1S03G 5E3RA 1N36H 2JE6I 3UEJA 4JVHA 4LFCH 2HHHH 2RC4A 1N34H 2QPOA 1BMOA 4LF4H 2JZMA 5LL6b 2KMQA 5HQ8A 2X06A 4X62H 2JEAI 3RF2A 1P9ZA 3UGDA 2ZQEA 2OVOA 1KBFA 1NXUA 4DR5H 1Y1BA 3TOAA 1OMUA 2X3TA 1X9ZA 1XNRH 2VQFH 1H0ZA 2NN6G 5FUWA 1ULMA 2OZUA 1LR8A 1CT0I 3UFFA 2L7XA 3OXFA 4SGBI 2NU3I 2QQEA 2JW6A 4K0KH 1ZZIA 4LF8H 4B8CD 1HEVA 4MPIA 1FYBA 3FSXA 1I94H 4E1PA 1V1HA 2A20A 1WKXA 4AIMA 2E5RA 2NU0I 1HNXH 1XNQH 4UXHA 2GKVA 2Z0SA 1MJ9A 2M5XA 3MEKA 1CHOI 2NU1I 2WVJA 5JEAG 1TURA 4KHPH 3NCVA 5J8CA 5EX0A 3FAUA 2UUCH 1OMTA 2L8EA 2BL5A 2J87A 2N71A 4JV5H 1WVNA 4JYAH 5JHWC 2UUAH 2YQPA 1OVOA 1LR9A 4DV2H 1KMAA 3QWPA 1SEIA 1FKAH 2CWFA 2HH2A 2KMRA 2QQCA 2V53A 2WGCA 4JI4H 4LFAH 2DB6A 3OETA 4DR2H 4NBQA 1XA6A 2ENZA 1J5KA 2ELIA 3FSYA 4BA1I 4DV0H 3KY9A 4AM3A 4DR4H 3OSSD 3V69A 1SGEI 1Z7KB 4L9MA 2JA1A 4WP4A 1XMQH 1UG8A 4LF7H 2NU4I 1ULNA 2ORVA 4X65H 4E9JA 1FJGH 2ENNA 2Y3MA 1PQXA 4WALA 4LF6H 1AN1I 1J5EH 1DS3I 1SGYI 5E3PA 3U1KA 1XMOH 2LUYA 4AQYH 1DTJA 3TOBA 5LMUH 1N13A 2DGRA 1TOTA 3OXLA 1CT4I 5CCLA 3L7ZC 4UXJA 1TUSA 2AXYA 3QTLD 5FUXA 1VBIA 4B8TA 1TBOA 2LB7A 1TBQR 3J81W 2QQDA 1WE8A 1AN7A 1M8BA 3HH2C 4OVOA 2CPQA 2QQ0A 3PDNA 2CPMA 1UVGA 4DR6H 4BA2I 1VIHA 1W4RA 3SGBI 3VKEA 3T1HH 2BUSA 1R0RI 2CTMA 3GR5A 1HJAI 4JI6H 5EX3A 2JXDA 1Z2IA 2ERWA 2RIJA 3VE5A 2KCXA 2MJHA
chains in the Genus database with same CATH topology
1XRHA 1NXUA 1Z2IA 1S20A 1V9NA 1X0AA 2CWFA 2X06A 2CWHA 2G8YA 4FJSA 3UOEA 1VBIA 1WTJA 3I0PA 4H8AA 4FJUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1XRH A;  1NXU A;  1Z2I A;  1S20 A;  1V9N A;  1X0A A;  2CWF A;  2X06 A;  2CWH A;  2G8Y A;  4FJS A;  3UOE A;  1VBI A;  1WTJ A;  3I0P A;  4H8A A;  4FJU A; 
#chains in the Genus database with same CATH topology
 2P6A C;  2CWG A;  2V1C C;  4AML A;  1J4W A;  1YU6 C;  1VIG A;  1MT1 A;  2B8T A;  1X0A A;  1CT2 I;  2PT7 G;  2PQ8 A;  4JI7 H;  4UXI A;  3GKU A;  1FAR A;  4FKD A;  1F0X A;  3J80 W;  1CGI I;  1HPT A;  1Q9B A;  2SGQ I;  1UHA A;  1N33 H;  1HNW H;  4QMF B;  2FNF X;  4YY3 H;  3I0P A;  1IBM H;  4LIJ A;  5FUY A;  2PY9 A;  3TO9 A;  1X4N A;  2ROW A;  4GI3 C;  1WGC A;  2V1C A;  5FUV A;  2G8Y A;  2YQR A;  4DV6 H;  2DKV A;  2JA9 A;  2ARP F;  1XRH A;  5CCM A;  2UUB H;  2N1A B;  4NZR M;  3UGI A;  4B3T H;  1IY6 A;  2N52 A;  2JEB I;  3GAB A;  1MJA A;  2LEO A;  3TJQ A;  5J8F A;  4B3M H;  1UUC A;  3R5D A;  2JZX A;  2CTL A;  1IBK H;  1IW4 A;  1K1G A;  4B3S H;  1WHR A;  4EC5 A;  2B0U C;  2GVI A;  2UXB H;  3JAM W;  1CE3 A;  2M8W A;  4JI5 H;  2Y0M A;  1PJU A;  3KDG A;  2JVZ A;  1IY5 A;  1X4S A;  2CWH A;  3R5C A;  1S20 A;  2J9R A;  2LTL A;  1TGS I;  3CXL A;  1DS2 I;  1LR7 A;  1YTP A;  3FC3 A;  5IT9 W;  5K36 G;  4JI1 H;  1K7V A;  2CJS C;  1RFH A;  2CTE A;  1SGQ I;  3BJI A;  2F3C I;  4DV5 H;  2GKT I;  3E59 A;  4OO1 G;  4HGU A;  2E3U A;  2E5L H;  2GIV A;  2N17 A;  2UU9 H;  1PPF I;  1SGD I;  1SGR I;  2P2R A;  3UEY A;  2ORW A;  7WGA A;  4DV7 H;  2SGE I;  2FMR A;  4A24 A;  1MSZ A;  1Y8F A;  4B3R H;  1ZZJ A;  4JI3 H;  3UGL A;  2GKR I;  1MJB A;  1X4M A;  1PTQ A;  1SGP I;  5DAE A;  2UVO A;  5IWA H;  1I6U A;  2ODD A;  2CTK A;  4DNC A;  2M6Q A;  4NXN H;  3GOX A;  2YUU A;  4LFB H;  2CTF A;  1SGN I;  1X74 A;  2O4C A;  4LF5 H;  3RU0 A;  3R5B A;  4OD6 A;  2F4V H;  1M8C A;  3TO7 A;  4JI8 H;  5C0X G;  3QD7 X;  3SEK C;  2QND A;  2DIP A;  4DV3 H;  3J7A K;  1FY7 A;  1KHM A;  1OYV I;  1PTR A;  1ZZK A;  2PQU A;  4DV1 H;  1V9N A;  5LMN H;  1W3S A;  3R5A A;  3EZJ A;  3E2I A;  2VKC A;  4DUZ H;  3QAH A;  1ZTG A;  1HDL A;  1V1I A;  3AEV B;  1TBN A;  2UXC H;  4DR7 H;  1P9G A;  1DT4 A;  4FJS A;  3UOE A;  4DV4 H;  4FJU A;  1HR0 H;  1R79 A;  3TO6 A;  3OXG A;  4JI2 H;  2UXD H;  3OTO H;  2WCY A;  2VQE H;  2LTM A;  1IBL H;  4B6D A;  4OX9 H;  5E3Q A;  1KBE A;  1XBT A;  4G08 A;  4WAN A;  2K1H A;  2FPH X;  4JI0 H;  4JVY A;  2BA0 A;  1TBR R;  3VDP A;  4IFD G;  2FFM A;  1WTJ A;  4JCV E;  2SGD I;  1Y1C A;  2CTJ A;  5DT9 A;  4PDB A;  4YHH H;  1NUB A;  1N32 H;  2HH3 A;  1BUS A;  4NZT M;  4GKJ H;  3OVO A;  3D00 A;  2SGF I;  5FLX W;  5A2Q W;  4X64 H;  2VRW B;  4NXM H;  1TIH A;  4X66 H;  2OD1 A;  1XX6 A;  4OCH A;  2XRC A;  1V8C A;  1WGT A;  2D9I A;  2KMP A;  4E1R A;  4DR1 H;  3KDK A;  2SGP I;  2OPU A;  9WGA A;  4LF9 H;  4GKK H;  1CGJ I;  2OU2 A;  2W0T A;  2E73 A;  1UVF A;  3SGQ I;  2ANR A;  1EC6 A;  1ULK A;  4H8A A;  1PCE A;  3OL0 A;  2K9H A;  3VDU A;  2NU2 I;  3B4V C;  2LF0 A;  3T1Y H;  1TUA A;  1FAQ A;  1K7T A;  5HI7 A;  2JYY A;  2KMO A;  5BR8 H;  2ZM6 H;  2OPV A;  1K7U A;  1VDD A;  1HNZ H;  2ANN A;  2A1S A;  4DUY H;  1ODH A;  3SB1 A;  1CSO I;  2UZ3 A;  2X52 A;  2LRR A;  1U5K A;  4DR3 H;  1S03 G;  5E3R A;  1N36 H;  2JE6 I;  3UEJ A;  4JVH A;  4LFC H;  2HHH H;  2RC4 A;  1N34 H;  2QPO A;  1BMO A;  4LF4 H;  2JZM A;  5LL6 b;  2KMQ A;  5HQ8 A;  2X06 A;  4X62 H;  2JEA I;  3RF2 A;  1P9Z A;  3UGD A;  2ZQE A;  2OVO A;  1KBF A;  1NXU A;  4DR5 H;  1Y1B A;  3TOA A;  1OMU A;  2X3T A;  1X9Z A;  1XNR H;  2VQF H;  1H0Z A;  2NN6 G;  5FUW A;  1ULM A;  2OZU A;  1LR8 A;  1CT0 I;  3UFF A;  2L7X A;  3OXF A;  4SGB I;  2NU3 I;  2QQE A;  2JW6 A;  4K0K H;  1ZZI A;  4LF8 H;  4B8C D;  1HEV A;  4MPI A;  1FYB A;  3FSX A;  1I94 H;  4E1P A;  1V1H A;  2A20 A;  1WKX A;  4AIM A;  2E5R A;  2NU0 I;  1HNX H;  1XNQ H;  4UXH A;  2GKV A;  2Z0S A;  1MJ9 A;  2M5X A;  3MEK A;  1CHO I;  2NU1 I;  2WVJ A;  5JEA G;  1TUR A;  4KHP H;  3NCV A;  5J8C A;  5EX0 A;  3FAU A;  2UUC H;  1OMT A;  2L8E A;  2BL5 A;  2J87 A;  2N71 A;  4JV5 H;  1WVN A;  4JYA H;  5JHW C;  2UUA H;  2YQP A;  1OVO A;  1LR9 A;  4DV2 H;  1KMA A;  3QWP A;  1SEI A;  1FKA H;  2CWF A;  2HH2 A;  2KMR A;  2QQC A;  2V53 A;  2WGC A;  4JI4 H;  4LFA H;  2DB6 A;  3OET A;  4DR2 H;  4NBQ A;  1XA6 A;  2ENZ A;  1J5K A;  2ELI A;  3FSY A;  4BA1 I;  4DV0 H;  3KY9 A;  4AM3 A;  4DR4 H;  3OSS D;  3V69 A;  1SGE I;  1Z7K B;  4L9M A;  2JA1 A;  4WP4 A;  1XMQ H;  1UG8 A;  4LF7 H;  2NU4 I;  1ULN A;  2ORV A;  4X65 H;  4E9J A;  1FJG H;  2ENN A;  2Y3M A;  1PQX A;  4WAL A;  4LF6 H;  1AN1 I;  1J5E H;  1DS3 I;  1SGY I;  5E3P A;  3U1K A;  1XMO H;  2LUY A;  4AQY H;  1DTJ A;  3TOB A;  5LMU H;  1N13 A;  2DGR A;  1TOT A;  3OXL A;  1CT4 I;  5CCL A;  3L7Z C;  4UXJ A;  1TUS A;  2AXY A;  3QTL D;  5FUX A;  1VBI A;  4B8T A;  1TBO A;  2LB7 A;  1TBQ R;  3J81 W;  2QQD A;  1WE8 A;  1AN7 A;  1M8B A;  3HH2 C;  4OVO A;  2CPQ A;  2QQ0 A;  3PDN A;  2CPM A;  1UVG A;  4DR6 H;  4BA2 I;  1VIH A;  1W4R A;  3SGB I;  3VKE A;  3T1H H;  2BUS A;  1R0R I;  2CTM A;  3GR5 A;  1HJA I;  4JI6 H;  5EX3 A;  2JXD A;  1Z2I A;  2ERW A;  2RIJ A;  3VE5 A;  2KCX A;  2MJH A; 
#chains in the Genus database with same CATH homology
 1XRH A;  1NXU A;  1Z2I A;  1S20 A;  1V9N A;  1X0A A;  2CWF A;  2X06 A;  2CWH A;  2G8Y A;  4FJS A;  3UOE A;  1VBI A;  1WTJ A;  3I0P A;  4H8A A;  4FJU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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