3UOEA

The crystal structure of dehydrogenase from sinorhizobium meliloti
Total Genus 97
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
97
sequence length
339
structure length
339
Chain Sequence
LYFQSMMRLPPARLRNLSVALLEKRGVPADSARLQANLLLEAELRGLPSHGLQRLPLLLSRLDKGLANPTTRGNGTWRRASFLSVDGERGLGPVVMMDAMRVTRRILKETGLAIAAIRNANHMGMLAYYAEAAARDGLIGIVMSTSEALVHPFGGTQALIGTNPVAIGIPAAGHPFVLDLATSIVSMGKINNHAMRGLAIPPGWAVDRDGRATTDPHAAQAGAIAPFGDAKGYGLGLAIELLVAALAGSNLAPDVNGTLDDIHPANKGDLLILIDPSAGAGSIPALAAYLDRLRLSRPLDPTQPVAIPGDGARARRAAAAKTGIELPQPLFDHLTALEA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords Dehydrogenase
publication title The crystal structure of dehydrogenase from Sinorhizobium meliloti
rcsb
source organism Sinorhizobium meliloti
molecule tags Oxidoreductase
total genus 97
structure length 339
sequence length 339
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-11-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02615 Ldh_2 Malate/L-lactate dehydrogenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1530.10 Mainly Alpha Orthogonal Bundle Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 3uoeA01
3.30.60.50 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Hypothetical oxidoreductase yiak; domain 3 3uoeA03
3.30.1370.60 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 Hypothetical oxidoreductase yiak; domain 2 3uoeA02
4FJUA 1Z2IA 2CWHA 1V9NA 1WTJA 2X06A 4H8AA 1VBIA 1S20A 1X0AA 3UOEA 4FJSA 2G8YA 1NXUA 3I0PA 1XRHA 2CWFA
chains in the Genus database with same CATH superfamily
3GKUA 1M8CA 1X9ZA 1M8BA 4JI5H 3SGBI 1PJUA 3UEJA 1Y8FA 5E3RA 2FPHX 1IBLH 2VQFH 4JI7H 2CTMA 1J5KA 2UUAH 2SGPI 2CTLA 1CGII 4E9JA 2K1HA 4B3TH 2E73A 2CPMA 1KMAA 1XRHA 1OYVI 4X62H 1R79A 2UXCH 3J81W 1W3SA 4DR7H 4FJUA 2UU9H 1TIHA 2N17A 4JVYA 5LMNH 1XMOH 1X74A 1X4MA 4DV5H 1I6UA 4DV4H 5J8FA 2ARPF 2NU4I 2Y0MA 4UXIA 3TOAA 2OU2A 3R5AA 2JXDA 2JEAI 1TURA 2GVIA 1PQXA 2KMRA 5E3PA 1HR0H 1NXUA 3R5CA 2QNDA 1UVGA 2M8WA 4JCVE 1CT4I 5EX0A 1P9ZA 1U5KA 1SGNI 1Y1BA 1Z7KB 1HNXH 4UXHA 1ULNA 1CT2I 3UGDA 4WALA 1DS3I 5JHWC 1ODHA 2F4VH 1PTRA 2HHHH 3B4VC 4OX9H 2X06A 1H0ZA 4LF4H 4GI3C 2KMOA 2HH3A 3KDKA 1XMQH 1FYBA 4DV0H 1XNRH 2GKVA 2UXBH 1S03G 2CPQA 1FARA 4B3RH 4EC5A 2QPOA 4UXJA 2QQEA 4DV7H 1HPTA 3CXLA 1XX6A 1BMOA 1YU6C 3GOXA 1HNZH 4AMLA 3EZJA 2Y3MA 1PTQA 5IT9W 2LTLA 3OVOA 4K0KH 1PPFI 4DR4H 2JW6A 2LTMA 4JI8H 2ELIA 2FNFX 5A2QW 4JI0H 2ORVA 1XBTA 3BJIA 2KMQA 2BUSA 1CHOI 2X3TA 4PDBA 3PDNA 2BA0A 2FMRA 2JEBI 3UGLA 1K7TA 4X64H 3KY9A 3FSXA 1WTJA 1IY5A 1W4RA 1I94H 2QQ0A 5HQ8A 4DV6H 1FKAH 4OD6A 4JI2H 4SGBI 3GABA 2CWGA 1TUSA 2PY9A 3AEVB 1IW4A 1N36H 2SGEI 3QTLD 4X66H 3FC3A 2N1AB 2SGDI 3KDGA 1LR8A 2BL5A 1UG8A 1ZZKA 2NU2I 4B6DA 3RU0A 5CCLA 3VKEA 3NCVA 1V1HA 5C0XG 4AIMA 2SGFI 3OTOH 4DR1H 4DV3H 4NBQA 2UUCH 4JI4H 5DAEA 2DGRA 4LF7H 4JYAH 2MJHA 2UZ3A 2LRRA 3GR5A 2ANNA 2OVOA 1F0XA 2DB6A 4B8CD 1Y1CA 1FY7A 1DS2I 4B3SH 2K9HA 5FUYA 4GKKH 3E59A 4B3MH 1WGCA 3QAHA 4QMFB 2OZUA 2VQEH 3T1YH 1N33H 2ERWA 2WVJA 2L7XA 1TBQR 3QD7X 2JA1A 1HJAI 2UUBH 2P6AC 3D00A 1TBRR 2W0TA 2HH2A 2ANRA 2NN6G 2JE6I 2A1SA 4LFCH 2YUUA 3E2IA 2N52A 1N13A 4KHPH 3VDUA 5CCMA 1BUSA 5E3QA 1NUBA 1J5EH 3FSYA 4JI6H 3SGQI 1TUAA 9WGAA 1VIGA 5BR8H 1SGDI 3OXLA 3JAMW 3J80W 1TBNA 4DV1H 2JYYA 4HGUA 2L8EA 1OVOA 4E1RA 2ENNA 1ZZIA 1YTPA 1CGJI 4LF5H 1UHAA 2KMPA 5FUWA 3TO9A 4L9MA 4LFBH 1MJ9A 2DKVA 3QWPA 2B8TA 3V69A 4OVOA 2V1CC 2KCXA 4DR2H 1X4NA 3OL0A 5FUVA 1UVFA 2ZM6H 1CSOI 4DR5H 2GKTI 4IFDG 1SGYI 5HI7A 4G08A 1ZZJA 1ZTGA 5DT9A 4YY3H 2CTEA 1KHMA 1FAQA 1LR9A 2AXYA 2CWFA 4BA2I 2NU0I 1TBOA 2X52A 5LL6b 3VE5A 4WANA 1N34H 1K7UA 1MJAA 1SGRI 1ULKA 3SEKC 1WVNA 4BA1I 1X0AA 2V53A 1HEVA 2VRWB 4DR3H 1WE8A 1V1IA 2P2RA 3I0PA 3TO6A 1OMTA 4LF9H 2PT7G 2V1CA 2WCYA 2PQ8A 2WGCA 2OPUA 4X65H 1XA6A 2Z0SA 3L7ZC 3TJQA 1MT1A 4DUYH 2E5LH 1WGTA 2XRCA 5FLXW 2SGQI 1VDDA 1LR7A 1J4WA 1V8CA 1HNWH 1SEIA 2CWHA 4LFAH 1KBFA 1R0RI 4LF6H 2OPVA 1PCEA 3RF2A 2OD1A 5JEAG 2ROWA 2NU3I 2CTKA 1S20A 2A20A 2F3CI 2O4CA 2JZMA 1KBEA 2GKRI 1X4SA 3UGIA 1VIHA 2M6QA 2VKCA 1AN7A 2RC4A 1IBKH 1ULMA 1DT4A 2PQUA 4LF8H 2JVZA 2RIJA 2J87A 2QQCA 2D9IA 4H8AA 3TOBA 3OXFA 4MPIA 1MSZA 2CTJA 3U1KA 4FKDA 4NZRM 4NXMH 1IY6A 2LB7A 1DTJA 1N32H 1K7VA 2JZXA 4YHHH 1HDLA 4WP4A 5FUXA 2LUYA 1SGEI 3UOEA 4JI3H 2B0UC 1SGPI 1FJGH 5LMUH 4AM3A 2N71A 4LIJA 1P9GA 4DNCA 4NZTM 4E1PA 1SGQI 1WKXA 2E5RA 4JV5H 4JVHA 3HH2C 1CE3A 2J9RA 3MEKA 2QQDA 2NU1I 4DR6H 4JI1H 7WGAA 1TGSI 2G8YA 1AN1I 3OXGA 2JA9A 3J7AK 1CT0I 5EX3A 3R5BA 1K1GA 2DIPA 4DV2H 3UEYA 1IBMH 4NXNH 1XNQH 5J8CA 1UUCA 1Z2IA 4AQYH 1TOTA 3SB1A 1VBIA 2ZQEA 4GKJH 4FJSA 2UXDH 2CJSC 3FAUA 3TO7A 2ODDA 2FFMA 2YQRA 4A24A 2GIVA 3VDPA 1RFHA 2E3UA 1MJBA 3R5DA 1OMUA 1EC6A 3OETA 4DUZH 4OCHA 2LEOA 2ORWA 1V9NA 1Q9BA 2M5XA 1WHRA 3T1HH 2UVOA 2CTFA 5IWAH 4B8TA 2LF0A 2YQPA 2ENZA 3OSSD 4OO1G 3UFFA 5K36G
chains in the Genus database with same CATH topology
4FJUA 1Z2IA 2CWHA 1V9NA 1WTJA 2X06A 4H8AA 1VBIA 1S20A 1X0AA 3UOEA 4FJSA 2G8YA 1NXUA 3I0PA 1XRHA 2CWFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4FJU A;  1Z2I A;  2CWH A;  1V9N A;  1WTJ A;  2X06 A;  4H8A A;  1VBI A;  1S20 A;  1X0A A;  3UOE A;  4FJS A;  2G8Y A;  1NXU A;  3I0P A;  1XRH A;  2CWF A; 
#chains in the Genus database with same CATH topology
 3GKU A;  1M8C A;  1X9Z A;  1M8B A;  4JI5 H;  3SGB I;  1PJU A;  3UEJ A;  1Y8F A;  5E3R A;  2FPH X;  1IBL H;  2VQF H;  4JI7 H;  2CTM A;  1J5K A;  2UUA H;  2SGP I;  2CTL A;  1CGI I;  4E9J A;  2K1H A;  4B3T H;  2E73 A;  2CPM A;  1KMA A;  1XRH A;  1OYV I;  4X62 H;  1R79 A;  2UXC H;  3J81 W;  1W3S A;  4DR7 H;  4FJU A;  2UU9 H;  1TIH A;  2N17 A;  4JVY A;  5LMN H;  1XMO H;  1X74 A;  1X4M A;  4DV5 H;  1I6U A;  4DV4 H;  5J8F A;  2ARP F;  2NU4 I;  2Y0M A;  4UXI A;  3TOA A;  2OU2 A;  3R5A A;  2JXD A;  2JEA I;  1TUR A;  2GVI A;  1PQX A;  2KMR A;  5E3P A;  1HR0 H;  1NXU A;  3R5C A;  2QND A;  1UVG A;  2M8W A;  4JCV E;  1CT4 I;  5EX0 A;  1P9Z A;  1U5K A;  1SGN I;  1Y1B A;  1Z7K B;  1HNX H;  4UXH A;  1ULN A;  1CT2 I;  3UGD A;  4WAL A;  1DS3 I;  5JHW C;  1ODH A;  2F4V H;  1PTR A;  2HHH H;  3B4V C;  4OX9 H;  2X06 A;  1H0Z A;  4LF4 H;  4GI3 C;  2KMO A;  2HH3 A;  3KDK A;  1XMQ H;  1FYB A;  4DV0 H;  1XNR H;  2GKV A;  2UXB H;  1S03 G;  2CPQ A;  1FAR A;  4B3R H;  4EC5 A;  2QPO A;  4UXJ A;  2QQE A;  4DV7 H;  1HPT A;  3CXL A;  1XX6 A;  1BMO A;  1YU6 C;  3GOX A;  1HNZ H;  4AML A;  3EZJ A;  2Y3M A;  1PTQ A;  5IT9 W;  2LTL A;  3OVO A;  4K0K H;  1PPF I;  4DR4 H;  2JW6 A;  2LTM A;  4JI8 H;  2ELI A;  2FNF X;  5A2Q W;  4JI0 H;  2ORV A;  1XBT A;  3BJI A;  2KMQ A;  2BUS A;  1CHO I;  2X3T A;  4PDB A;  3PDN A;  2BA0 A;  2FMR A;  2JEB I;  3UGL A;  1K7T A;  4X64 H;  3KY9 A;  3FSX A;  1WTJ A;  1IY5 A;  1W4R A;  1I94 H;  2QQ0 A;  5HQ8 A;  4DV6 H;  1FKA H;  4OD6 A;  4JI2 H;  4SGB I;  3GAB A;  2CWG A;  1TUS A;  2PY9 A;  3AEV B;  1IW4 A;  1N36 H;  2SGE I;  3QTL D;  4X66 H;  3FC3 A;  2N1A B;  2SGD I;  3KDG A;  1LR8 A;  2BL5 A;  1UG8 A;  1ZZK A;  2NU2 I;  4B6D A;  3RU0 A;  5CCL A;  3VKE A;  3NCV A;  1V1H A;  5C0X G;  4AIM A;  2SGF I;  3OTO H;  4DR1 H;  4DV3 H;  4NBQ A;  2UUC H;  4JI4 H;  5DAE A;  2DGR A;  4LF7 H;  4JYA H;  2MJH A;  2UZ3 A;  2LRR A;  3GR5 A;  2ANN A;  2OVO A;  1F0X A;  2DB6 A;  4B8C D;  1Y1C A;  1FY7 A;  1DS2 I;  4B3S H;  2K9H A;  5FUY A;  4GKK H;  3E59 A;  4B3M H;  1WGC A;  3QAH A;  4QMF B;  2OZU A;  2VQE H;  3T1Y H;  1N33 H;  2ERW A;  2WVJ A;  2L7X A;  1TBQ R;  3QD7 X;  2JA1 A;  1HJA I;  2UUB H;  2P6A C;  3D00 A;  1TBR R;  2W0T A;  2HH2 A;  2ANR A;  2NN6 G;  2JE6 I;  2A1S A;  4LFC H;  2YUU A;  3E2I A;  2N52 A;  1N13 A;  4KHP H;  3VDU A;  5CCM A;  1BUS A;  5E3Q A;  1NUB A;  1J5E H;  3FSY A;  4JI6 H;  3SGQ I;  1TUA A;  9WGA A;  1VIG A;  5BR8 H;  1SGD I;  3OXL A;  3JAM W;  3J80 W;  1TBN A;  4DV1 H;  2JYY A;  4HGU A;  2L8E A;  1OVO A;  4E1R A;  2ENN A;  1ZZI A;  1YTP A;  1CGJ I;  4LF5 H;  1UHA A;  2KMP A;  5FUW A;  3TO9 A;  4L9M A;  4LFB H;  1MJ9 A;  2DKV A;  3QWP A;  2B8T A;  3V69 A;  4OVO A;  2V1C C;  2KCX A;  4DR2 H;  1X4N A;  3OL0 A;  5FUV A;  1UVF A;  2ZM6 H;  1CSO I;  4DR5 H;  2GKT I;  4IFD G;  1SGY I;  5HI7 A;  4G08 A;  1ZZJ A;  1ZTG A;  5DT9 A;  4YY3 H;  2CTE A;  1KHM A;  1FAQ A;  1LR9 A;  2AXY A;  2CWF A;  4BA2 I;  2NU0 I;  1TBO A;  2X52 A;  5LL6 b;  3VE5 A;  4WAN A;  1N34 H;  1K7U A;  1MJA A;  1SGR I;  1ULK A;  3SEK C;  1WVN A;  4BA1 I;  1X0A A;  2V53 A;  1HEV A;  2VRW B;  4DR3 H;  1WE8 A;  1V1I A;  2P2R A;  3I0P A;  3TO6 A;  1OMT A;  4LF9 H;  2PT7 G;  2V1C A;  2WCY A;  2PQ8 A;  2WGC A;  2OPU A;  4X65 H;  1XA6 A;  2Z0S A;  3L7Z C;  3TJQ A;  1MT1 A;  4DUY H;  2E5L H;  1WGT A;  2XRC A;  5FLX W;  2SGQ I;  1VDD A;  1LR7 A;  1J4W A;  1V8C A;  1HNW H;  1SEI A;  2CWH A;  4LFA H;  1KBF A;  1R0R I;  4LF6 H;  2OPV A;  1PCE A;  3RF2 A;  2OD1 A;  5JEA G;  2ROW A;  2NU3 I;  2CTK A;  1S20 A;  2A20 A;  2F3C I;  2O4C A;  2JZM A;  1KBE A;  2GKR I;  1X4S A;  3UGI A;  1VIH A;  2M6Q A;  2VKC A;  1AN7 A;  2RC4 A;  1IBK H;  1ULM A;  1DT4 A;  2PQU A;  4LF8 H;  2JVZ A;  2RIJ A;  2J87 A;  2QQC A;  2D9I A;  4H8A A;  3TOB A;  3OXF A;  4MPI A;  1MSZ A;  2CTJ A;  3U1K A;  4FKD A;  4NZR M;  4NXM H;  1IY6 A;  2LB7 A;  1DTJ A;  1N32 H;  1K7V A;  2JZX A;  4YHH H;  1HDL A;  4WP4 A;  5FUX A;  2LUY A;  1SGE I;  3UOE A;  4JI3 H;  2B0U C;  1SGP I;  1FJG H;  5LMU H;  4AM3 A;  2N71 A;  4LIJ A;  1P9G A;  4DNC A;  4NZT M;  4E1P A;  1SGQ I;  1WKX A;  2E5R A;  4JV5 H;  4JVH A;  3HH2 C;  1CE3 A;  2J9R A;  3MEK A;  2QQD A;  2NU1 I;  4DR6 H;  4JI1 H;  7WGA A;  1TGS I;  2G8Y A;  1AN1 I;  3OXG A;  2JA9 A;  3J7A K;  1CT0 I;  5EX3 A;  3R5B A;  1K1G A;  2DIP A;  4DV2 H;  3UEY A;  1IBM H;  4NXN H;  1XNQ H;  5J8C A;  1UUC A;  1Z2I A;  4AQY H;  1TOT A;  3SB1 A;  1VBI A;  2ZQE A;  4GKJ H;  4FJS A;  2UXD H;  2CJS C;  3FAU A;  3TO7 A;  2ODD A;  2FFM A;  2YQR A;  4A24 A;  2GIV A;  3VDP A;  1RFH A;  2E3U A;  1MJB A;  3R5D A;  1OMU A;  1EC6 A;  3OET A;  4DUZ H;  4OCH A;  2LEO A;  2ORW A;  1V9N A;  1Q9B A;  2M5X A;  1WHR A;  3T1H H;  2UVO A;  2CTF A;  5IWA H;  4B8T A;  2LF0 A;  2YQP A;  2ENZ A;  3OSS D;  4OO1 G;  3UFF A;  5K36 G; 
#chains in the Genus database with same CATH homology
 4FJU A;  1Z2I A;  2CWH A;  1V9N A;  1WTJ A;  2X06 A;  4H8A A;  1VBI A;  1S20 A;  1X0A A;  3UOE A;  4FJS A;  2G8Y A;  1NXU A;  3I0P A;  1XRH A;  2CWF A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...