3UOEA

The crystal structure of dehydrogenase from sinorhizobium meliloti
Total Genus 97
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
97
sequence length
339
structure length
339
Chain Sequence
b'LYFQSMMRLPPARLRNLSVALLEKRGVPADSARLQANLLLEAELRGLPSHGLQRLPLLLSRLDKGLANPTTRGNGTWRRASFLSVDGERGLGPVVMMDAMRVTRRILKETGLAIAAIRNANHMGMLAYYAEAAARDGLIGIVMSTSEALVHPFGGTQALIGTNPVAIGIPAAGHPFVLDLATSIVSMGKINNHAMRGLAIPPGWAVDRDGRATTDPHAAQAGAIAPFGDAKGYGLGLAIELLVAALAGSNLAPDVNGTLDDIHPANKGDLLILIDPSAGAGSIPALAAYLDRLRLSRPLDPTQPVAIPGDGARARRAAAAKTGIELPQPLFDHLTALEA'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Dehydrogenase
molecule tags Oxidoreductase
source organism Sinorhizobium meliloti
publication title The crystal structure of dehydrogenase from Sinorhizobium meliloti
rcsb
total genus 97
structure length 339
sequence length 339
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-11-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02615 Ldh_2 Malate/L-lactate dehydrogenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1530.10 Mainly Alpha Orthogonal Bundle Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 3uoeA01
3.30.60.50 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Hypothetical oxidoreductase yiak; domain 3 3uoeA03
3.30.1370.60 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 Hypothetical oxidoreductase yiak; domain 2 3uoeA02
1VBIA 2X06A 3UOEA 2CWHA 2CWFA 1V9NA 1Z2IA 1WTJA 3I0PA 1X0AA 4FJSA 1XRHA 1NXUA 1S20A 2G8YA 4H8AA 4FJUA
chains in the Genus database with same CATH superfamily
4JI5H 4B3RH 2UXCH 1SGDI 2UUBH 3NCVA 3VDUA 2HHHH 2OVOA 3OTOH 5LMUH 2SGDI 3FC3A 1WVNA 4JI8H 2W0TA 2P2RA 1AN7A 3TO9A 2UXDH 2NU3I 1NUBA 1PTRA 2Y0MA 2P6AC 4NXMH 2OZUA 2CWFA 2SGEI 2NN6G 5EX3A 3HH2C 3J7AK 2LTMA 2JA1A 4DV6H 1N33H 1I94H 2LF0A 3OXLA 2D9IA 2CWGA 1K7UA 4JI4H 1N34H 3E2IA 3FSXA 3JAMW 1OYVI 1V8CA 4WP4A 1HNXH 4OD6A 1XMQH 1IBLH 3UFFA 1DT4A 1H0ZA 4NZTM 4DR4H 1N36H 4B3MH 2J9RA 4DV0H 5IT9W 1LR9A 3TO7A 3EZJA 5IWAH 4JI7H 1SGRI 2ERWA 3RU0A 2ZM6H 1CGII 2WVJA 4A24A 4LF4H 3R5AA 1U5KA 3E59A 9WGAA 2M6QA 1K7VA 2JE6I 1UVGA 1LR7A 5DT9A 5FUWA 1ZZJA 2K1HA 1LR8A 1UUCA 2FMRA 3RF2A 4JI3H 2F4VH 2ELIA 3R5DA 2RIJA 1HEVA 2YUUA 5FUXA 2JXDA 2ORVA 1OMUA 1IY6A 2B0UC 2HH3A 2DKVA 3MEKA 2J87A 5DAEA 1FYBA 3KY9A 1IY5A 2KCXA 3U1KA 4FJUA 2CTEA 4LF6H 1F0XA 3CXLA 1TOTA 3TO6A 2L8EA 4LF7H 4LF8H 1Q9BA 1Z2IA 1IBKH 4B6DA 2O4CA 1K7TA 3UEJA 4FKDA 2YQRA 5A2QW 2SGPI 2M8WA 4DV1H 4DV2H 2CWHA 3FAUA 3OXFA 1X4SA 1BUSA 1CT2I 1CSOI 3D00A 2CPQA 4KHPH 1UHAA 4EC5A 4AM3A 2JA9A 2DB6A 4NXNH 1BMOA 4X66H 2CTJA 1ULNA 2LRRA 5FUYA 2RC4A 4B3SH 4OO1G 1MSZA 2VRWB 3KDGA 5CCMA 2OPUA 1V1IA 1EC6A 1ZZIA 4JI6H 5FUVA 2UVOA 4JVHA 4X62H 1XX6A 2NU2I 4X64H 2G8YA 4H8AA 2PQUA 1HR0H 1TUAA 1SGPI 1KMAA 1DS2I 1TIHA 1W3SA 1KBEA 4OVOA 1S03G 2JYYA 1TURA 2FFMA 2KMPA 4DR3H 1K1GA 2GIVA 4JCVE 2JW6A 2E73A 1V9NA 5FLXW 4YHHH 2PT7G 2QNDA 4UXJA 3OSSD 1HPTA 1WGCA 2CTMA 2ENZA 2Y3MA 1M8BA 5J8CA 1FKAH 3QD7X 1X9ZA 3J81W 4BA2I 1SGQI 1HNWH 2QQCA 2JEAI 5HQ8A 3I0PA 2GKRI 3GABA 5E3QA 3SGBI 3T1YH 5HI7A 1VBIA 1WHRA 3PDNA 4GI3C 2NU4I 1HNZH 2E5LH 2V1CA 2L7XA 2K9HA 1XRHA 5J8FA 1CE3A 3TOBA 1FAQA 2CJSC 4NZRM 4DR7H 1KHMA 4LIJA 3SGQI 1OMTA 4LF9H 1TGSI 4UXIA 1PPFI 2F3CI 4LFCH 3QAHA 4QMFB 1Y1BA 1AN1I 2NU0I 3GR5A 4OX9H 1J5KA 4DUYH 1UG8A 1XBTA 2OD1A 4BA1I 3UGIA 4E9JA 2JEBI 3TOAA 1NXUA 3OL0A 1CT4I 2VQEH 1CGJI 2X3TA 1RFHA 3QTLD 1IW4A 1TBRR 4SGBI 1SGNI 1Z7KB 5E3PA 1X4MA 1FJGH 1XNRH 2GKTI 2ARPF 4JYAH 1FARA 2QPOA 2DIPA 3FSYA 4MPIA 1X0AA 1MJ9A 1WGTA 3AEVB 3UGLA 4AMLA 2Z0SA 1SGYI 3UOEA 3B4VC 2AXYA 1CHOI 2MJHA 5CCLA 2PY9A 1X4NA 4LF5H 1YU6C 1PTQA 3R5CA 2OU2A 4X65H 3T1HH 2M5XA 5EX0A 3UGDA 4OCHA 4LFAH 1UVFA 3L7ZC 5K36G 4B8TA 2X06A 1DS3I 1M8CA 3R5BA 5JHWC 1S20A 1DTJA 4LFBH 4WANA 4B3TH 3BJIA 3OXGA 2GVIA 2HH2A 1PCEA 4JI0H 2KMQA 1P9GA 2QQDA 2VKCA 5JEAG 4DUZH 2VQFH 2ODDA 1HJAI 2CTLA 2WGCA 4B8CD 1ZTGA 3OVOA 1Y1CA 3J80W 3SB1A 4DV7H 1W4RA 2ENNA 4FJSA 4L9MA 4DR2H 1Y8FA 2YQPA 4AQYH 1MJBA 2ORWA 1PQXA 2UXBH 2B8TA 1TBNA 4YY3H 1ODHA 2XRCA 4DNCA 2OPVA 4NBQA 4DV4H 2JVZA 4UXHA 1TBQR 2BUSA 2E3UA 2CPMA 1I6UA 4JI2H 2BA0A 1VIGA 2CTKA 1VIHA 2N52A 1VDDA 3TJQA 2UUAH 5BR8H 2PQ8A 2A1SA 2KMRA 1IBMH 2LUYA 2QQ0A 4IFDG 1ULKA 1ULMA 4G08A 7WGAA 4GKKH 2N1AB 2LB7A 5LMNH 1XMOH 1XA6A 2KMOA 1TBOA 3VKEA 1SEIA 1ZZKA 2E5RA 1N13A 3QWPA 1YTPA 2LTLA 2NU1I 2ROWA 1R0RI 1MT1A 1MJAA 3V69A 2UU9H 4AIMA 1WKXA 2JZMA 2N17A 2FNFX 5C0XG 2ANNA 2SGQI 2V53A 1PJUA 2GKVA 3VE5A 1J4WA 2UZ3A 2A20A 1SGEI 4E1PA 1XNQH 1J5EH 1OVOA 2DGRA 4DV3H 4GKJH 3VDPA 2BL5A 4PDBA 4WALA 4JV5H 1CT0I 4JI1H 3SEKC 2JZXA 2QQEA 3KDKA 2FPHX 3GKUA 3UEYA 1FY7A 2CTFA 3GOXA 4DR5H 1KBFA 4K0KH 2ZQEA 1TUSA 2UUCH 1HDLA 2ANRA 4DV5H 1R79A 2X52A 1X74A 1V1HA 1WTJA 4DR1H 4HGUA 2WCYA 1P9ZA 2V1CC 2SGFI 3OETA 2LEOA 2N71A 5E3RA 1WE8A 5LL6b 4JVYA 4DR6H 1N32H 4E1RA
chains in the Genus database with same CATH topology
1VBIA 2X06A 3UOEA 2CWHA 2CWFA 1V9NA 1Z2IA 1WTJA 3I0PA 1X0AA 4FJSA 1XRHA 1NXUA 1S20A 2G8YA 4H8AA 4FJUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VBI A;  2X06 A;  3UOE A;  2CWH A;  2CWF A;  1V9N A;  1Z2I A;  1WTJ A;  3I0P A;  1X0A A;  4FJS A;  1XRH A;  1NXU A;  1S20 A;  2G8Y A;  4H8A A;  4FJU A; 
#chains in the Genus database with same CATH topology
 4JI5 H;  4B3R H;  2UXC H;  1SGD I;  2UUB H;  3NCV A;  3VDU A;  2HHH H;  2OVO A;  3OTO H;  5LMU H;  2SGD I;  3FC3 A;  1WVN A;  4JI8 H;  2W0T A;  2P2R A;  1AN7 A;  3TO9 A;  2UXD H;  2NU3 I;  1NUB A;  1PTR A;  2Y0M A;  2P6A C;  4NXM H;  2OZU A;  2CWF A;  2SGE I;  2NN6 G;  5EX3 A;  3HH2 C;  3J7A K;  2LTM A;  2JA1 A;  4DV6 H;  1N33 H;  1I94 H;  2LF0 A;  3OXL A;  2D9I A;  2CWG A;  1K7U A;  4JI4 H;  1N34 H;  3E2I A;  3FSX A;  3JAM W;  1OYV I;  1V8C A;  4WP4 A;  1HNX H;  4OD6 A;  1XMQ H;  1IBL H;  3UFF A;  1DT4 A;  1H0Z A;  4NZT M;  4DR4 H;  1N36 H;  4B3M H;  2J9R A;  4DV0 H;  5IT9 W;  1LR9 A;  3TO7 A;  3EZJ A;  5IWA H;  4JI7 H;  1SGR I;  2ERW A;  3RU0 A;  2ZM6 H;  1CGI I;  2WVJ A;  4A24 A;  4LF4 H;  3R5A A;  1U5K A;  3E59 A;  9WGA A;  2M6Q A;  1K7V A;  2JE6 I;  1UVG A;  1LR7 A;  5DT9 A;  5FUW A;  1ZZJ A;  2K1H A;  1LR8 A;  1UUC A;  2FMR A;  3RF2 A;  4JI3 H;  2F4V H;  2ELI A;  3R5D A;  2RIJ A;  1HEV A;  2YUU A;  5FUX A;  2JXD A;  2ORV A;  1OMU A;  1IY6 A;  2B0U C;  2HH3 A;  2DKV A;  3MEK A;  2J87 A;  5DAE A;  1FYB A;  3KY9 A;  1IY5 A;  2KCX A;  3U1K A;  4FJU A;  2CTE A;  4LF6 H;  1F0X A;  3CXL A;  1TOT A;  3TO6 A;  2L8E A;  4LF7 H;  4LF8 H;  1Q9B A;  1Z2I A;  1IBK H;  4B6D A;  2O4C A;  1K7T A;  3UEJ A;  4FKD A;  2YQR A;  5A2Q W;  2SGP I;  2M8W A;  4DV1 H;  4DV2 H;  2CWH A;  3FAU A;  3OXF A;  1X4S A;  1BUS A;  1CT2 I;  1CSO I;  3D00 A;  2CPQ A;  4KHP H;  1UHA A;  4EC5 A;  4AM3 A;  2JA9 A;  2DB6 A;  4NXN H;  1BMO A;  4X66 H;  2CTJ A;  1ULN A;  2LRR A;  5FUY A;  2RC4 A;  4B3S H;  4OO1 G;  1MSZ A;  2VRW B;  3KDG A;  5CCM A;  2OPU A;  1V1I A;  1EC6 A;  1ZZI A;  4JI6 H;  5FUV A;  2UVO A;  4JVH A;  4X62 H;  1XX6 A;  2NU2 I;  4X64 H;  2G8Y A;  4H8A A;  2PQU A;  1HR0 H;  1TUA A;  1SGP I;  1KMA A;  1DS2 I;  1TIH A;  1W3S A;  1KBE A;  4OVO A;  1S03 G;  2JYY A;  1TUR A;  2FFM A;  2KMP A;  4DR3 H;  1K1G A;  2GIV A;  4JCV E;  2JW6 A;  2E73 A;  1V9N A;  5FLX W;  4YHH H;  2PT7 G;  2QND A;  4UXJ A;  3OSS D;  1HPT A;  1WGC A;  2CTM A;  2ENZ A;  2Y3M A;  1M8B A;  5J8C A;  1FKA H;  3QD7 X;  1X9Z A;  3J81 W;  4BA2 I;  1SGQ I;  1HNW H;  2QQC A;  2JEA I;  5HQ8 A;  3I0P A;  2GKR I;  3GAB A;  5E3Q A;  3SGB I;  3T1Y H;  5HI7 A;  1VBI A;  1WHR A;  3PDN A;  4GI3 C;  2NU4 I;  1HNZ H;  2E5L H;  2V1C A;  2L7X A;  2K9H A;  1XRH A;  5J8F A;  1CE3 A;  3TOB A;  1FAQ A;  2CJS C;  4NZR M;  4DR7 H;  1KHM A;  4LIJ A;  3SGQ I;  1OMT A;  4LF9 H;  1TGS I;  4UXI A;  1PPF I;  2F3C I;  4LFC H;  3QAH A;  4QMF B;  1Y1B A;  1AN1 I;  2NU0 I;  3GR5 A;  4OX9 H;  1J5K A;  4DUY H;  1UG8 A;  1XBT A;  2OD1 A;  4BA1 I;  3UGI A;  4E9J A;  2JEB I;  3TOA A;  1NXU A;  3OL0 A;  1CT4 I;  2VQE H;  1CGJ I;  2X3T A;  1RFH A;  3QTL D;  1IW4 A;  1TBR R;  4SGB I;  1SGN I;  1Z7K B;  5E3P A;  1X4M A;  1FJG H;  1XNR H;  2GKT I;  2ARP F;  4JYA H;  1FAR A;  2QPO A;  2DIP A;  3FSY A;  4MPI A;  1X0A A;  1MJ9 A;  1WGT A;  3AEV B;  3UGL A;  4AML A;  2Z0S A;  1SGY I;  3UOE A;  3B4V C;  2AXY A;  1CHO I;  2MJH A;  5CCL A;  2PY9 A;  1X4N A;  4LF5 H;  1YU6 C;  1PTQ A;  3R5C A;  2OU2 A;  4X65 H;  3T1H H;  2M5X A;  5EX0 A;  3UGD A;  4OCH A;  4LFA H;  1UVF A;  3L7Z C;  5K36 G;  4B8T A;  2X06 A;  1DS3 I;  1M8C A;  3R5B A;  5JHW C;  1S20 A;  1DTJ A;  4LFB H;  4WAN A;  4B3T H;  3BJI A;  3OXG A;  2GVI A;  2HH2 A;  1PCE A;  4JI0 H;  2KMQ A;  1P9G A;  2QQD A;  2VKC A;  5JEA G;  4DUZ H;  2VQF H;  2ODD A;  1HJA I;  2CTL A;  2WGC A;  4B8C D;  1ZTG A;  3OVO A;  1Y1C A;  3J80 W;  3SB1 A;  4DV7 H;  1W4R A;  2ENN A;  4FJS A;  4L9M A;  4DR2 H;  1Y8F A;  2YQP A;  4AQY H;  1MJB A;  2ORW A;  1PQX A;  2UXB H;  2B8T A;  1TBN A;  4YY3 H;  1ODH A;  2XRC A;  4DNC A;  2OPV A;  4NBQ A;  4DV4 H;  2JVZ A;  4UXH A;  1TBQ R;  2BUS A;  2E3U A;  2CPM A;  1I6U A;  4JI2 H;  2BA0 A;  1VIG A;  2CTK A;  1VIH A;  2N52 A;  1VDD A;  3TJQ A;  2UUA H;  5BR8 H;  2PQ8 A;  2A1S A;  2KMR A;  1IBM H;  2LUY A;  2QQ0 A;  4IFD G;  1ULK A;  1ULM A;  4G08 A;  7WGA A;  4GKK H;  2N1A B;  2LB7 A;  5LMN H;  1XMO H;  1XA6 A;  2KMO A;  1TBO A;  3VKE A;  1SEI A;  1ZZK A;  2E5R A;  1N13 A;  3QWP A;  1YTP A;  2LTL A;  2NU1 I;  2ROW A;  1R0R I;  1MT1 A;  1MJA A;  3V69 A;  2UU9 H;  4AIM A;  1WKX A;  2JZM A;  2N17 A;  2FNF X;  5C0X G;  2ANN A;  2SGQ I;  2V53 A;  1PJU A;  2GKV A;  3VE5 A;  1J4W A;  2UZ3 A;  2A20 A;  1SGE I;  4E1P A;  1XNQ H;  1J5E H;  1OVO A;  2DGR A;  4DV3 H;  4GKJ H;  3VDP A;  2BL5 A;  4PDB A;  4WAL A;  4JV5 H;  1CT0 I;  4JI1 H;  3SEK C;  2JZX A;  2QQE A;  3KDK A;  2FPH X;  3GKU A;  3UEY A;  1FY7 A;  2CTF A;  3GOX A;  4DR5 H;  1KBF A;  4K0K H;  2ZQE A;  1TUS A;  2UUC H;  1HDL A;  2ANR A;  4DV5 H;  1R79 A;  2X52 A;  1X74 A;  1V1H A;  1WTJ A;  4DR1 H;  4HGU A;  2WCY A;  1P9Z A;  2V1C C;  2SGF I;  3OET A;  2LEO A;  2N71 A;  5E3R A;  1WE8 A;  5LL6 b;  4JVY A;  4DR6 H;  1N32 H;  4E1R A; 
#chains in the Genus database with same CATH homology
 1VBI A;  2X06 A;  3UOE A;  2CWH A;  2CWF A;  1V9N A;  1Z2I A;  1WTJ A;  3I0P A;  1X0A A;  4FJS A;  1XRH A;  1NXU A;  1S20 A;  2G8Y A;  4H8A A;  4FJU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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