2QNDA

Crystal structure of the kh1-kh2 domains from human fragile x mental retardation protein
Total Genus 44
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
141
structure length
141
Chain Sequence
FHEQFIVREDLMGLAIGTHGANIQQARKVPGVTAIDLDEDTCTFHIYGEDQDAVKKARSFLEFAEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFVGTKDSIANATVLLDYHLNYLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Rna binding protein
molecule keywords FMR1 protein
publication title Fragile X mental retardation syndrome: structure of the KH1-KH2 domains of fragile X mental retardation protein.
pubmed doi rcsb
source organism Homo sapiens
total genus 44
structure length 141
sequence length 141
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-07-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00013 KH_1 KH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 2qndA02
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 2qndA01
5JEAG 1DT4A 2JZXA 4AIMA 2CTFA 2P2RA 1J4WA 4IFDG 2JVZA 4LIJA 3U1KA 4WANA 2JEAI 5K36G 1X4NA 2PY9A 2PQUA 4JVHA 1VIGA 1KHMA 1WVNA 2JA9A 4AM3A 2HH2A 2Z0SA 1EC6A 3V69A 1ZZKA 1X4MA 2AXYA 2OPUA 2YQRA 2CTMA 1ZZIA 3AEVB 4B8TA 2BL5A 2E3UA 2FMRA 3L7ZC 2JEBI 1K1GA 2HH3A 2CTLA 2OPVA 2QNDA 4WALA 2CTEA 1ZTGA 4JVYA 2MJHA 1J5KA 4BA2I 2DGRA 5C0XG 1ZZJA 1VIHA 1DTJA 1TUAA 1WE8A 2NN6G 2ANNA 2CPQA 4NBQA 3VKEA 2CTJA 4OO1G 4QMFB 2BA0A 4BA1I 2CTKA 2JE6I 2ANRA
chains in the Genus database with same CATH superfamily
5JEAG 1DT4A 4AIMA 4DUZH 1F0XA 2O4CA 4LIJA 3U1KA 4LFBH 4WANA 5K36G 2FPHX 3SB1A 4H8AA 1VIGA 2VQFH 4KHPH 2JA9A 1KHMA 2CWFA 1X0AA 4DV1H 3V69A 4LFCH 2OPUA 4NZRM 2CTMA 1ZZIA 4OD6A 4B8CD 3T1HH 4NXNH 4JI5H 2JEBI 4FJSA 3OSSD 4JYAH 4X64H 4YHHH 2OPVA 4JVYA 2CTEA 2UXBH 4NXMH 1XMQH 4B3RH 4JI3H 3NCVA 4BA2I 2K1HA 4LF6H 1XNQH 4JI7H 2DGRA 5C0XG 2LTMA 1WHRA 1DTJA 1TUAA 5A2QW 2ANNA 4DR4H 1IBKH 3KDGA 4NBQA 3J80W 4LF9H 2CTJA 4DV3H 4OO1G 4DR3H 2UUAH 4JI8H 2CTKA 1N32H 2JZXA 4FJUA 2P2RA 4LF4H 1N33H 4GKJH 4JI0H 1S03G 4JI2H 1WVNA 1EC6A 4DV7H 3AEVB 3GABA 4PDBA 2BL5A 2FMRA 4DR6H 4GKKH 1I6UA 4OCHA 3L7ZC 4X66H 1NXUA 1K1GA 2HH3A 1XRHA 1AN7A 4DV4H 4YY3H 1N36H 4LF8H 4E9JA 1J5KA 1N34H 2X06A 2VKCA 5LL6b 1VIHA 1PQXA 2M8WA 1XNRH 3UOEA 4DV6H 2BA0A 4DR2H 1ODHA 4JI1H 1V9NA 2UUCH 5BR8H 4JI4H 2D9IA 1X9ZA 3QD7X 1UG8A 4G08A 2JVZA 3JAMW 3GR5A 4EC5A 2JEAI 4AQYH 1X4NA 2PY9A 1V8CA 4B3MH 4JV5H 4JVHA 4LF5H 2Z0SA 4DR5H 2UU9H 1ZZKA 1X4MA 1XMOH 3J7AK 4B8TA 2E3UA 4LF7H 5DT9A 3EZJA 2PT7G 5IT9W 1IBMH 4K0KH 4WALA 5FLXW 1HNXH 3T1YH 2CPMA 1FJGH 1SEIA 4DV0H 2MJHA 1WTJA 2CWHA 2LF0A 1HNWH 2FFMA 1WE8A 1ZZJA 2Y3MA 3RF2A 4OX9H 3VKEA 2G8YA 2F4VH 4QMFB 5IWAH 4LFAH 2JE6I 4DV5H 5LMUH 4IFDG 2CTFA 2E5LH 1J4WA 1HR0H 4B3SH 4DR7H 1FKAH 5LMNH 4DUYH 2PQUA 1S20A 4AM3A 2HH2A 2HHHH 2LTLA 4DR1H 2A1SA 2AXYA 3OETA 1J5EH 2YQRA 2UXCH 2UXDH 3KDKA 4X62H 1Z2IA 2CTLA 1I94H 1ZTGA 2QNDA 4JI6H 3OTOH 1VBIA 4X65H 1MSZA 3J81W 2ZM6H 1IBLH 2M6QA 3FAUA 2NN6G 4DV2H 3I0PA 4B3TH 1HNZH 4NZTM 2UUBH 2CPQA 2VQEH 2LRRA 4BA1I 2ZQEA 3GKUA 2ANRA
chains in the Genus database with same CATH topology
5JEAG 1DT4A 2JZXA 4AIMA 2CTFA 2P2RA 1J4WA 4IFDG 2JVZA 4LIJA 3U1KA 4WANA 2JEAI 5K36G 1X4NA 2PY9A 2PQUA 4JVHA 1VIGA 1KHMA 1WVNA 2JA9A 4AM3A 2HH2A 2Z0SA 1EC6A 3V69A 1ZZKA 1X4MA 2AXYA 2OPUA 2YQRA 2CTMA 1ZZIA 3AEVB 4B8TA 2BL5A 2E3UA 2FMRA 3L7ZC 2JEBI 1K1GA 2HH3A 2CTLA 2OPVA 2QNDA 4WALA 2CTEA 1ZTGA 4JVYA 2MJHA 1J5KA 4BA2I 2DGRA 5C0XG 1ZZJA 1VIHA 1DTJA 1TUAA 1WE8A 2NN6G 2ANNA 2CPQA 4NBQA 3VKEA 2CTJA 4OO1G 4QMFB 2BA0A 4BA1I 2CTKA 2JE6I 2ANRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5JEA G;  1DT4 A;  2JZX A;  4AIM A;  2CTF A;  2P2R A;  1J4W A;  4IFD G;  2JVZ A;  4LIJ A;  3U1K A;  4WAN A;  2JEA I;  5K36 G;  1X4N A;  2PY9 A;  2PQU A;  4JVH A;  1VIG A;  1KHM A;  1WVN A;  2JA9 A;  4AM3 A;  2HH2 A;  2Z0S A;  1EC6 A;  3V69 A;  1ZZK A;  1X4M A;  2AXY A;  2OPU A;  2YQR A;  2CTM A;  1ZZI A;  3AEV B;  4B8T A;  2BL5 A;  2E3U A;  2FMR A;  3L7Z C;  2JEB I;  1K1G A;  2HH3 A;  2CTL A;  2OPV A;  2QND A;  4WAL A;  2CTE A;  1ZTG A;  4JVY A;  2MJH A;  1J5K A;  4BA2 I;  2DGR A;  5C0X G;  1ZZJ A;  1VIH A;  1DTJ A;  1TUA A;  1WE8 A;  2NN6 G;  2ANN A;  2CPQ A;  4NBQ A;  3VKE A;  2CTJ A;  4OO1 G;  4QMF B;  2BA0 A;  4BA1 I;  2CTK A;  2JE6 I;  2ANR A; 
#chains in the Genus database with same CATH topology
 5JEA G;  1DT4 A;  4AIM A;  4DUZ H;  1F0X A;  2O4C A;  4LIJ A;  3U1K A;  4LFB H;  4WAN A;  5K36 G;  2FPH X;  3SB1 A;  4H8A A;  1VIG A;  2VQF H;  4KHP H;  2JA9 A;  1KHM A;  2CWF A;  1X0A A;  4DV1 H;  3V69 A;  4LFC H;  2OPU A;  4NZR M;  2CTM A;  1ZZI A;  4OD6 A;  4B8C D;  3T1H H;  4NXN H;  4JI5 H;  2JEB I;  4FJS A;  3OSS D;  4JYA H;  4X64 H;  4YHH H;  2OPV A;  4JVY A;  2CTE A;  2UXB H;  4NXM H;  1XMQ H;  4B3R H;  4JI3 H;  3NCV A;  4BA2 I;  2K1H A;  4LF6 H;  1XNQ H;  4JI7 H;  2DGR A;  5C0X G;  2LTM A;  1WHR A;  1DTJ A;  1TUA A;  5A2Q W;  2ANN A;  4DR4 H;  1IBK H;  3KDG A;  4NBQ A;  3J80 W;  4LF9 H;  2CTJ A;  4DV3 H;  4OO1 G;  4DR3 H;  2UUA H;  4JI8 H;  2CTK A;  1N32 H;  2JZX A;  4FJU A;  2P2R A;  4LF4 H;  1N33 H;  4GKJ H;  4JI0 H;  1S03 G;  4JI2 H;  1WVN A;  1EC6 A;  4DV7 H;  3AEV B;  3GAB A;  4PDB A;  2BL5 A;  2FMR A;  4DR6 H;  4GKK H;  1I6U A;  4OCH A;  3L7Z C;  4X66 H;  1NXU A;  1K1G A;  2HH3 A;  1XRH A;  1AN7 A;  4DV4 H;  4YY3 H;  1N36 H;  4LF8 H;  4E9J A;  1J5K A;  1N34 H;  2X06 A;  2VKC A;  5LL6 b;  1VIH A;  1PQX A;  2M8W A;  1XNR H;  3UOE A;  4DV6 H;  2BA0 A;  4DR2 H;  1ODH A;  4JI1 H;  1V9N A;  2UUC H;  5BR8 H;  4JI4 H;  2D9I A;  1X9Z A;  3QD7 X;  1UG8 A;  4G08 A;  2JVZ A;  3JAM W;  3GR5 A;  4EC5 A;  2JEA I;  4AQY H;  1X4N A;  2PY9 A;  1V8C A;  4B3M H;  4JV5 H;  4JVH A;  4LF5 H;  2Z0S A;  4DR5 H;  2UU9 H;  1ZZK A;  1X4M A;  1XMO H;  3J7A K;  4B8T A;  2E3U A;  4LF7 H;  5DT9 A;  3EZJ A;  2PT7 G;  5IT9 W;  1IBM H;  4K0K H;  4WAL A;  5FLX W;  1HNX H;  3T1Y H;  2CPM A;  1FJG H;  1SEI A;  4DV0 H;  2MJH A;  1WTJ A;  2CWH A;  2LF0 A;  1HNW H;  2FFM A;  1WE8 A;  1ZZJ A;  2Y3M A;  3RF2 A;  4OX9 H;  3VKE A;  2G8Y A;  2F4V H;  4QMF B;  5IWA H;  4LFA H;  2JE6 I;  4DV5 H;  5LMU H;  4IFD G;  2CTF A;  2E5L H;  1J4W A;  1HR0 H;  4B3S H;  4DR7 H;  1FKA H;  5LMN H;  4DUY H;  2PQU A;  1S20 A;  4AM3 A;  2HH2 A;  2HHH H;  2LTL A;  4DR1 H;  2A1S A;  2AXY A;  3OET A;  1J5E H;  2YQR A;  2UXC H;  2UXD H;  3KDK A;  4X62 H;  1Z2I A;  2CTL A;  1I94 H;  1ZTG A;  2QND A;  4JI6 H;  3OTO H;  1VBI A;  4X65 H;  1MSZ A;  3J81 W;  2ZM6 H;  1IBL H;  2M6Q A;  3FAU A;  2NN6 G;  4DV2 H;  3I0P A;  4B3T H;  1HNZ H;  4NZT M;  2UUB H;  2CPQ A;  2VQE H;  2LRR A;  4BA1 I;  2ZQE A;  3GKU A;  2ANR A; 
#chains in the Genus database with same CATH homology
 5JEA G;  1DT4 A;  2JZX A;  4AIM A;  2CTF A;  2P2R A;  1J4W A;  4IFD G;  2JVZ A;  4LIJ A;  3U1K A;  4WAN A;  2JEA I;  5K36 G;  1X4N A;  2PY9 A;  2PQU A;  4JVH A;  1VIG A;  1KHM A;  1WVN A;  2JA9 A;  4AM3 A;  2HH2 A;  2Z0S A;  1EC6 A;  3V69 A;  1ZZK A;  1X4M A;  2AXY A;  2OPU A;  2YQR A;  2CTM A;  1ZZI A;  3AEV B;  4B8T A;  2BL5 A;  2E3U A;  2FMR A;  3L7Z C;  2JEB I;  1K1G A;  2HH3 A;  2CTL A;  2OPV A;  2QND A;  4WAL A;  2CTE A;  1ZTG A;  4JVY A;  2MJH A;  1J5K A;  4BA2 I;  2DGR A;  5C0X G;  1ZZJ A;  1VIH A;  1DTJ A;  1TUA A;  1WE8 A;  2NN6 G;  2ANN A;  2CPQ A;  4NBQ A;  3VKE A;  2CTJ A;  4OO1 G;  4QMF B;  2BA0 A;  4BA1 I;  2CTK A;  2JE6 I;  2ANR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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