2K1HA

Solution nmr structure of ser13 from staphylococcus epidermidis. northeast structural genomics consortium target ser13
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
86
structure length
86
Chain Sequence
MEIIAISETPNHNTMKVSLSEPRQDNSFTTYTAAQEGQPEFINRLFEIEGVKSIFYVLDFISIDKEDNANWNELLPQIENTFAKSN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution Structure of SeR13.
rcsb
molecule tags Structural genomics, unknown function
source organism Staphylococcus epidermidis
molecule keywords Uncharacterized protein SeR13
total genus 12
structure length 86
sequence length 86
ec nomenclature
pdb deposition date 2008-03-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08712 Nfu_N Scaffold protein Nfu/NifU N terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.70 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 Scaffold protein Nfu/NifU, N-terminal domain 2k1hA00
2LTMA 2M6QA 2LTLA 1PQXA 2K1HA 2M8WA 2FFMA
chains in the Genus database with same CATH superfamily
2E3UA 2NN6G 2F4VH 1V8CA 2UXBH 5LMNH 2Y3MA 2UUCH 4OX9H 2LRRA 4EC5A 4IFDG 1EC6A 3KDKA 1J5KA 4LF9H 2CPQA 1N34H 3JAMW 4BA2I 4BA1I 3J7AK 4AM3A 4DV2H 2UUBH 5LMUH 2UUAH 4E9JA 2E5LH 2JE6I 2Z0SA 2G8YA 2PT7G 4JI0H 1VBIA 1VIGA 1X4NA 1X9ZA 2D9IA 2CTJA 2X06A 3UOEA 4DR2H 1KHMA 2AXYA 4B3SH 4H8AA 1WTJA 2CPMA 1HNXH 1S03G 3GABA 4LF8H 4LFAH 2VKCA 1XRHA 5C0XG 1ZZJA 5BR8H 4B3TH 2UXDH 4JI2H 2JEAI 4JVHA 2CTKA 1IBMH 1HR0H 4X62H 1F0XA 3OSSD 4DR1H 2M8WA 2BA0A 1HNZH 2LTMA 1N33H 4DV6H 1AN7A 1XMQH 3J80W 2HH3A 5FLXW 4DUZH 4LF7H 2JA9A 2CTEA 2K1HA 4AQYH 4LFCH 4WALA 4DR5H 2UXCH 2FFMA 4NZTM 4B8TA 3KDGA 2YQRA 1VIHA 2LTLA 5IT9W 2JEBI 1X0AA 2CTMA 4LIJA 4YHHH 1I94H 4JI7H 1DT4A 4DR3H 1NXUA 4GKKH 4PDBA 3FAUA 2JZXA 3V69A 4X65H 2ZM6H 3OTOH 2ANNA 1ZTGA 5JEAG 4K0KH 3J81W 2CWFA 3L7ZC 3I0PA 5IWAH 1N32H 2VQFH 2M6QA 1DTJA 4LF4H 1I6UA 1J5EH 4B3MH 4JI3H 1J4WA 2A1SA 4AIMA 4NXNH 1IBLH 4DR6H 4DR4H 4JVYA 5LL6b 2ZQEA 4JI4H 2PY9A 3EZJA 1ODHA 3U1KA 2PQUA 2BL5A 4X64H 1K1GA 3T1HH 1WE8A 2CTLA 3QD7X 2MJHA 2OPVA 2CTFA 2HHHH 4GKJH 1X4MA 1S20A 4NXMH 4OO1G 1XNQH 3GKUA 4JI6H 4DV4H 2P2RA 2DGRA 5DT9A 1HNWH 4G08A 1MSZA 5K36G 1UG8A 4B8CD 2CWHA 2ANRA 2FMRA 4FJSA 1FJGH 2LF0A 2VQEH 1ZZKA 1XNRH 1TUAA 4DV3H 4KHPH 2HH2A 2JVZA 3SB1A 4LF6H 4OCHA 4X66H 3RF2A 1WVNA 1XMOH 2FPHX 3OETA 4OD6A 1SEIA 4DV5H 4JI5H 4LFBH 4B3RH 2OPUA 4DR7H 4JI1H 2UU9H 1Z2IA 2QNDA 3AEVB 4DV7H 1PQXA 4LF5H 4QMFB 5A2QW 3T1YH 4DV0H 2O4CA 4YY3H 4DUYH 1ZZIA 4NBQA 4WANA 1V9NA 1WHRA 4NZRM 4JI8H 1IBKH 3VKEA 3NCVA 1FKAH 3GR5A 4FJUA 4JV5H 4JYAH 4DV1H 1N36H
chains in the Genus database with same CATH topology
2LTMA 2M6QA 2LTLA 1PQXA 2K1HA 2M8WA 2FFMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LTM A;  2M6Q A;  2LTL A;  1PQX A;  2K1H A;  2M8W A;  2FFM A; 
#chains in the Genus database with same CATH topology
 2E3U A;  2NN6 G;  2F4V H;  1V8C A;  2UXB H;  5LMN H;  2Y3M A;  2UUC H;  4OX9 H;  2LRR A;  4EC5 A;  4IFD G;  1EC6 A;  3KDK A;  1J5K A;  4LF9 H;  2CPQ A;  1N34 H;  3JAM W;  4BA2 I;  4BA1 I;  3J7A K;  4AM3 A;  4DV2 H;  2UUB H;  5LMU H;  2UUA H;  4E9J A;  2E5L H;  2JE6 I;  2Z0S A;  2G8Y A;  2PT7 G;  4JI0 H;  1VBI A;  1VIG A;  1X4N A;  1X9Z A;  2D9I A;  2CTJ A;  2X06 A;  3UOE A;  4DR2 H;  1KHM A;  2AXY A;  4B3S H;  4H8A A;  1WTJ A;  2CPM A;  1HNX H;  1S03 G;  3GAB A;  4LF8 H;  4LFA H;  2VKC A;  1XRH A;  5C0X G;  1ZZJ A;  5BR8 H;  4B3T H;  2UXD H;  4JI2 H;  2JEA I;  4JVH A;  2CTK A;  1IBM H;  1HR0 H;  4X62 H;  1F0X A;  3OSS D;  4DR1 H;  2M8W A;  2BA0 A;  1HNZ H;  2LTM A;  1N33 H;  4DV6 H;  1AN7 A;  1XMQ H;  3J80 W;  2HH3 A;  5FLX W;  4DUZ H;  4LF7 H;  2JA9 A;  2CTE A;  2K1H A;  4AQY H;  4LFC H;  4WAL A;  4DR5 H;  2UXC H;  2FFM A;  4NZT M;  4B8T A;  3KDG A;  2YQR A;  1VIH A;  2LTL A;  5IT9 W;  2JEB I;  1X0A A;  2CTM A;  4LIJ A;  4YHH H;  1I94 H;  4JI7 H;  1DT4 A;  4DR3 H;  1NXU A;  4GKK H;  4PDB A;  3FAU A;  2JZX A;  3V69 A;  4X65 H;  2ZM6 H;  3OTO H;  2ANN A;  1ZTG A;  5JEA G;  4K0K H;  3J81 W;  2CWF A;  3L7Z C;  3I0P A;  5IWA H;  1N32 H;  2VQF H;  2M6Q A;  1DTJ A;  4LF4 H;  1I6U A;  1J5E H;  4B3M H;  4JI3 H;  1J4W A;  2A1S A;  4AIM A;  4NXN H;  1IBL H;  4DR6 H;  4DR4 H;  4JVY A;  5LL6 b;  2ZQE A;  4JI4 H;  2PY9 A;  3EZJ A;  1ODH A;  3U1K A;  2PQU A;  2BL5 A;  4X64 H;  1K1G A;  3T1H H;  1WE8 A;  2CTL A;  3QD7 X;  2MJH A;  2OPV A;  2CTF A;  2HHH H;  4GKJ H;  1X4M A;  1S20 A;  4NXM H;  4OO1 G;  1XNQ H;  3GKU A;  4JI6 H;  4DV4 H;  2P2R A;  2DGR A;  5DT9 A;  1HNW H;  4G08 A;  1MSZ A;  5K36 G;  1UG8 A;  4B8C D;  2CWH A;  2ANR A;  2FMR A;  4FJS A;  1FJG H;  2LF0 A;  2VQE H;  1ZZK A;  1XNR H;  1TUA A;  4DV3 H;  4KHP H;  2HH2 A;  2JVZ A;  3SB1 A;  4LF6 H;  4OCH A;  4X66 H;  3RF2 A;  1WVN A;  1XMO H;  2FPH X;  3OET A;  4OD6 A;  1SEI A;  4DV5 H;  4JI5 H;  4LFB H;  4B3R H;  2OPU A;  4DR7 H;  4JI1 H;  2UU9 H;  1Z2I A;  2QND A;  3AEV B;  4DV7 H;  1PQX A;  4LF5 H;  4QMF B;  5A2Q W;  3T1Y H;  4DV0 H;  2O4C A;  4YY3 H;  4DUY H;  1ZZI A;  4NBQ A;  4WAN A;  1V9N A;  1WHR A;  4NZR M;  4JI8 H;  1IBK H;  3VKE A;  3NCV A;  1FKA H;  3GR5 A;  4FJU A;  4JV5 H;  4JYA H;  4DV1 H;  1N36 H; 
#chains in the Genus database with same CATH homology
 2LTM A;  2M6Q A;  2LTL A;  1PQX A;  2K1H A;  2M8W A;  2FFM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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