1K1GA

Structural basis for recognition of the intron branch site rna by splicing factor 1
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
122
structure length
122
Chain Sequence
TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Gene regulation/rna
molecule keywords 5'-R(*UP*AP*UP*AP*CP*UP*AP*AP*CP*AP*A)-3'
publication title Structural basis for recognition of the intron branch site RNA by splicing factor 1.
pubmed doi rcsb
source organism Homo sapiens
total genus 24
structure length 122
sequence length 122
ec nomenclature
pdb deposition date 2001-09-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00013 KH_1 KH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 1k1gA00
4AIMA 1WE8A 2FMRA 2HH3A 1TUAA 4QMFB 2PY9A 4AM3A 4IFDG 4OO1G 4JVHA 2CTFA 2CTLA 1X4MA 1ZZIA 4BA2I 2E3UA 1ZZJA 1J4WA 2CTKA 2NN6G 2BL5A 4LIJA 5C0XG 1J5KA 1K1GA 2P2RA 2OPUA 2ANNA 3V69A 2JEBI 2CTEA 2MJHA 2YQRA 2JEAI 1DTJA 2JA9A 2PQUA 1KHMA 4JVYA 2DGRA 2QNDA 5K36G 1DT4A 1ZZKA 4BA1I 2CTMA 2JZXA 2BA0A 1WVNA 4WANA 1VIGA 3U1KA 2ANRA 2CTJA 2JVZA 2Z0SA 2HH2A 5JEAG 2AXYA 4WALA 1VIHA 2CPQA 2OPVA 3VKEA 2JE6I 3L7ZC 4B8TA 1ZTGA 1EC6A 3AEVB 1X4NA 4NBQA
chains in the Genus database with same CATH superfamily
1X9ZA 2UUBH 4AQYH 1ODHA 4OO1G 4DV6H 2CTFA 4DV4H 2E3UA 4YHHH 1ZZJA 1J4WA 4DV7H 1J5KA 2ZQEA 4K0KH 4DV1H 2PT7G 4JVYA 4DR5H 2UUCH 5FLXW 2ZM6H 5DT9A 1DT4A 1XNQH 4LFCH 1F0XA 1S03G 3UOEA 4B3TH 4DR4H 2D9IA 2ANRA 4FJSA 4JI0H 4WALA 4X62H 5A2QW 4B3MH 4JI3H 3NCVA 4JI7H 5LL6b 2UUAH 2JE6I 3L7ZC 3J80W 1XMOH 1EC6A 1X4NA 3OTOH 4WANA 4NBQA 2E5LH 3GR5A 4LF8H 4JVHA 4IFDG 3FAUA 3EZJA 2FFMA 1V9NA 3GABA 3J7AK 1Z2IA 1X4MA 4GKKH 2F4VH 4JI8H 4LFBH 1N33H 3GKUA 2OPUA 4DUZH 3V69A 2YQRA 1PQXA 2JA9A 4LF9H 4OD6A 2DGRA 1J5EH 1FJGH 2Y3MA 4E9JA 1ZZKA 2G8YA 2JZXA 4OX9H 4DR6H 4DUYH 1WVNA 3JAMW 4B3RH 1VIGA 4DV5H 3KDKA 1XMQH 2AXYA 2LF0A 4DR7H 1WHRA 2CPQA 3OSSD 5IWAH 2CWHA 2VQFH 1XNRH 4NXNH 1MSZA 4EC5A 2FMRA 2HH3A 4QMFB 4DR3H 4LF7H 4AM3A 4LFAH 4X65H 1ZZIA 4BA2I 2K1HA 2LTMA 2CTKA 2NN6G 2BL5A 1XRHA 4LIJA 4YY3H 4DV3H 2ANNA 1NXUA 4DV2H 2JEBI 5IT9W 1HNZH 1KHMA 4X66H 1DTJA 1N34H 4NZRM 1WTJA 2QNDA 3T1YH 4KHPH 5K36G 4JV5H 4BA1I 2CTMA 5LMNH 1VBIA 1IBLH 1I94H 4JI4H 4DR1H 4LF4H 4PDBA 2FPHX 2CTJA 2JVZA 2HH2A 1UG8A 4GKJH 2X06A 3T1HH 3VKEA 4JI1H 4OCHA 4B8TA 1ZTGA 2CWFA 2UXDH 3AEVB 2CPMA 4FJUA 4AIMA 1WE8A 2PY9A 2O4CA 1TUAA 4NZTM 1AN7A 2CTLA 4NXMH 4JI2H 4DV0H 4B3SH 5C0XG 1N36H 2P2RA 1K1GA 3OETA 2JEAI 1SEIA 4DR2H 2CTEA 2MJHA 3QD7X 2PQUA 1N32H 2UU9H 1HNXH 1IBKH 2M8WA 4X64H 4JI5H 1X0AA 1HR0H 3J81W 2A1SA 4LF5H 1I6UA 2BA0A 2UXBH 3RF2A 1HNWH 4H8AA 3U1KA 4JYAH 2LTLA 2HHHH 1V8CA 5BR8H 2VKCA 2Z0SA 2M6QA 5JEAG 1FKAH 2LRRA 1VIHA 1S20A 4B8CD 2UXCH 5LMUH 2VQEH 4LF6H 4G08A 2OPVA 3I0PA 3SB1A 4JI6H 3KDGA 1IBMH
chains in the Genus database with same CATH topology
4AIMA 1WE8A 2FMRA 2HH3A 1TUAA 4QMFB 2PY9A 4AM3A 4IFDG 4OO1G 4JVHA 2CTFA 2CTLA 1X4MA 1ZZIA 4BA2I 2E3UA 1ZZJA 1J4WA 2CTKA 2NN6G 2BL5A 4LIJA 5C0XG 1J5KA 1K1GA 2P2RA 2OPUA 2ANNA 3V69A 2JEBI 2CTEA 2MJHA 2YQRA 2JEAI 1DTJA 2JA9A 2PQUA 1KHMA 4JVYA 2DGRA 2QNDA 5K36G 1DT4A 1ZZKA 4BA1I 2CTMA 2JZXA 2BA0A 1WVNA 4WANA 1VIGA 3U1KA 2ANRA 2CTJA 2JVZA 2Z0SA 2HH2A 5JEAG 2AXYA 4WALA 1VIHA 2CPQA 2OPVA 3VKEA 2JE6I 3L7ZC 4B8TA 1ZTGA 1EC6A 3AEVB 1X4NA 4NBQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AIM A;  1WE8 A;  2FMR A;  2HH3 A;  1TUA A;  4QMF B;  2PY9 A;  4AM3 A;  4IFD G;  4OO1 G;  4JVH A;  2CTF A;  2CTL A;  1X4M A;  1ZZI A;  4BA2 I;  2E3U A;  1ZZJ A;  1J4W A;  2CTK A;  2NN6 G;  2BL5 A;  4LIJ A;  5C0X G;  1J5K A;  1K1G A;  2P2R A;  2OPU A;  2ANN A;  3V69 A;  2JEB I;  2CTE A;  2MJH A;  2YQR A;  2JEA I;  1DTJ A;  2JA9 A;  2PQU A;  1KHM A;  4JVY A;  2DGR A;  2QND A;  5K36 G;  1DT4 A;  1ZZK A;  4BA1 I;  2CTM A;  2JZX A;  2BA0 A;  1WVN A;  4WAN A;  1VIG A;  3U1K A;  2ANR A;  2CTJ A;  2JVZ A;  2Z0S A;  2HH2 A;  5JEA G;  2AXY A;  4WAL A;  1VIH A;  2CPQ A;  2OPV A;  3VKE A;  2JE6 I;  3L7Z C;  4B8T A;  1ZTG A;  1EC6 A;  3AEV B;  1X4N A;  4NBQ A; 
#chains in the Genus database with same CATH topology
 1X9Z A;  2UUB H;  4AQY H;  1ODH A;  4OO1 G;  4DV6 H;  2CTF A;  4DV4 H;  2E3U A;  4YHH H;  1ZZJ A;  1J4W A;  4DV7 H;  1J5K A;  2ZQE A;  4K0K H;  4DV1 H;  2PT7 G;  4JVY A;  4DR5 H;  2UUC H;  5FLX W;  2ZM6 H;  5DT9 A;  1DT4 A;  1XNQ H;  4LFC H;  1F0X A;  1S03 G;  3UOE A;  4B3T H;  4DR4 H;  2D9I A;  2ANR A;  4FJS A;  4JI0 H;  4WAL A;  4X62 H;  5A2Q W;  4B3M H;  4JI3 H;  3NCV A;  4JI7 H;  5LL6 b;  2UUA H;  2JE6 I;  3L7Z C;  3J80 W;  1XMO H;  1EC6 A;  1X4N A;  3OTO H;  4WAN A;  4NBQ A;  2E5L H;  3GR5 A;  4LF8 H;  4JVH A;  4IFD G;  3FAU A;  3EZJ A;  2FFM A;  1V9N A;  3GAB A;  3J7A K;  1Z2I A;  1X4M A;  4GKK H;  2F4V H;  4JI8 H;  4LFB H;  1N33 H;  3GKU A;  2OPU A;  4DUZ H;  3V69 A;  2YQR A;  1PQX A;  2JA9 A;  4LF9 H;  4OD6 A;  2DGR A;  1J5E H;  1FJG H;  2Y3M A;  4E9J A;  1ZZK A;  2G8Y A;  2JZX A;  4OX9 H;  4DR6 H;  4DUY H;  1WVN A;  3JAM W;  4B3R H;  1VIG A;  4DV5 H;  3KDK A;  1XMQ H;  2AXY A;  2LF0 A;  4DR7 H;  1WHR A;  2CPQ A;  3OSS D;  5IWA H;  2CWH A;  2VQF H;  1XNR H;  4NXN H;  1MSZ A;  4EC5 A;  2FMR A;  2HH3 A;  4QMF B;  4DR3 H;  4LF7 H;  4AM3 A;  4LFA H;  4X65 H;  1ZZI A;  4BA2 I;  2K1H A;  2LTM A;  2CTK A;  2NN6 G;  2BL5 A;  1XRH A;  4LIJ A;  4YY3 H;  4DV3 H;  2ANN A;  1NXU A;  4DV2 H;  2JEB I;  5IT9 W;  1HNZ H;  1KHM A;  4X66 H;  1DTJ A;  1N34 H;  4NZR M;  1WTJ A;  2QND A;  3T1Y H;  4KHP H;  5K36 G;  4JV5 H;  4BA1 I;  2CTM A;  5LMN H;  1VBI A;  1IBL H;  1I94 H;  4JI4 H;  4DR1 H;  4LF4 H;  4PDB A;  2FPH X;  2CTJ A;  2JVZ A;  2HH2 A;  1UG8 A;  4GKJ H;  2X06 A;  3T1H H;  3VKE A;  4JI1 H;  4OCH A;  4B8T A;  1ZTG A;  2CWF A;  2UXD H;  3AEV B;  2CPM A;  4FJU A;  4AIM A;  1WE8 A;  2PY9 A;  2O4C A;  1TUA A;  4NZT M;  1AN7 A;  2CTL A;  4NXM H;  4JI2 H;  4DV0 H;  4B3S H;  5C0X G;  1N36 H;  2P2R A;  1K1G A;  3OET A;  2JEA I;  1SEI A;  4DR2 H;  2CTE A;  2MJH A;  3QD7 X;  2PQU A;  1N32 H;  2UU9 H;  1HNX H;  1IBK H;  2M8W A;  4X64 H;  4JI5 H;  1X0A A;  1HR0 H;  3J81 W;  2A1S A;  4LF5 H;  1I6U A;  2BA0 A;  2UXB H;  3RF2 A;  1HNW H;  4H8A A;  3U1K A;  4JYA H;  2LTL A;  2HHH H;  1V8C A;  5BR8 H;  2VKC A;  2Z0S A;  2M6Q A;  5JEA G;  1FKA H;  2LRR A;  1VIH A;  1S20 A;  4B8C D;  2UXC H;  5LMU H;  2VQE H;  4LF6 H;  4G08 A;  2OPV A;  3I0P A;  3SB1 A;  4JI6 H;  3KDG A;  1IBM H; 
#chains in the Genus database with same CATH homology
 4AIM A;  1WE8 A;  2FMR A;  2HH3 A;  1TUA A;  4QMF B;  2PY9 A;  4AM3 A;  4IFD G;  4OO1 G;  4JVH A;  2CTF A;  2CTL A;  1X4M A;  1ZZI A;  4BA2 I;  2E3U A;  1ZZJ A;  1J4W A;  2CTK A;  2NN6 G;  2BL5 A;  4LIJ A;  5C0X G;  1J5K A;  1K1G A;  2P2R A;  2OPU A;  2ANN A;  3V69 A;  2JEB I;  2CTE A;  2MJH A;  2YQR A;  2JEA I;  1DTJ A;  2JA9 A;  2PQU A;  1KHM A;  4JVY A;  2DGR A;  2QND A;  5K36 G;  1DT4 A;  1ZZK A;  4BA1 I;  2CTM A;  2JZX A;  2BA0 A;  1WVN A;  4WAN A;  1VIG A;  3U1K A;  2ANR A;  2CTJ A;  2JVZ A;  2Z0S A;  2HH2 A;  5JEA G;  2AXY A;  4WAL A;  1VIH A;  2CPQ A;  2OPV A;  3VKE A;  2JE6 I;  3L7Z C;  4B8T A;  1ZTG A;  1EC6 A;  3AEV B;  1X4N A;  4NBQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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