2D9IA

Solution structure of the smr domain of nedd4-binding protein 2
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
96
structure length
96
Chain Sequence
GSSGSSGQNVLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNHSQGGVARIKPAVIKYLISHSFRFSEIKPGCLKVMLKSGPSSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Apoptosis
molecule keywords NEDD4-binding protein 2
publication title Solution structure of the SMR domain of NEDD4-binding protein 2
rcsb
source organism Homo sapiens
total genus 21
structure length 96
sequence length 96
ec nomenclature ec 3.-.-.-:
pdb deposition date 2005-12-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01713 Smr Smr domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.110 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 Ribosomal Protein S8; Chain: A, domain 1 2d9iA00
4OCHA 2D9IA 3FAUA 4OD6A 2VKCA 3QD7X 2ZQEA
chains in the Genus database with same CATH superfamily
2D9IA 3V69A 1J4WA 4LF9H 5K36G 3JAMW 1PQXA 3GKUA 4JYAH 3VKEA 1X4MA 4G08A 4EC5A 2E5LH 4JVHA 4X64H 4DV7H 2UU9H 4DV2H 2M8WA 4YHHH 4JI0H 1VBIA 4JI8H 1AN7A 1V9NA 4FJSA 1HNWH 2Z0SA 4LIJA 4X65H 2JE6I 4B3SH 2UUAH 4JI2H 2UXBH 2CTEA 4IFDG 5IT9W 5DT9A 4JI3H 4LFBH 4JI6H 2OPUA 4NXNH 2CPQA 2O4CA 2FFMA 4BA1I 3T1HH 4B8TA 4FJUA 3QD7X 1VIGA 4LF6H 1FKAH 3J7AK 4AQYH 2CTLA 2LTMA 1S20A 2CTMA 1J5KA 2LTLA 1N36H 1K1GA 4BA2I 5LMUH 2YQRA 1NXUA 3SB1A 1N32H 4GKJH 2BA0A 5FLXW 4E9JA 4DR7H 4YY3H 4NZTM 1VIHA 3OTOH 1XRHA 4DV6H 4DR5H 2ANRA 2UXDH 2HH2A 4JI7H 4JI4H 2DGRA 1MSZA 5LL6b 2LRRA 3GR5A 5LMNH 3AEVB 1TUAA 1J5EH 4AM3A 5BR8H 1ZZIA 1HR0H 4JI5H 4K0KH 2CTJA 1WVNA 2AXYA 1Z2IA 1IBKH 2P2RA 3KDGA 2HH3A 4QMFB 1ZZJA 2JVZA 2CPMA 1WE8A 4WALA 1IBMH 4OO1G 4DR1H 3OETA 3OSSD 2M6QA 2CWFA 5A2QW 3T1YH 4GKKH 2G8YA 4LFAH 2JEAI 4KHPH 4B3TH 4WANA 1V8CA 3J80W 2JZXA 4NXMH 2PQUA 4LF8H 2ZQEA 1I6UA 2NN6G 4H8AA 2OPVA 2F4VH 4JV5H 2ZM6H 4DV0H 1I94H 1WTJA 4B8CD 3FAUA 1XMOH 5C0XG 4AIMA 2Y3MA 2HHHH 2VQEH 4LF4H 1S03G 2UXCH 2CTFA 4LF7H 5JEAG 4DR2H 4DR6H 2LF0A 2JA9A 1HNXH 4JI1H 4X62H 4DV1H 4DR4H 1IBLH 3U1KA 4LF5H 4LFCH 1N34H 4DUZH 2A1SA 3EZJA 2JEBI 2CWHA 2X06A 1ZTGA 1X4NA 5IWAH 3I0PA 4X66H 4PDBA 1SEIA 4B3MH 1KHMA 2UUCH 4JVYA 1EC6A 4NBQA 4DUYH 2FPHX 1DTJA 1X0AA 4OCHA 2BL5A 2E3UA 1WHRA 1UG8A 1HNZH 1FJGH 3L7ZC 4OD6A 2QNDA 4DV3H 4NZRM 1X9ZA 1N33H 2MJHA 4DV4H 4DV5H 1XMQH 2CTKA 3RF2A 1DT4A 2ANNA 2PT7G 2K1HA 2UUBH 1ODHA 1F0XA 1XNQH 3UOEA 4OX9H 3GABA 2VQFH 3NCVA 2FMRA 2VKCA 1XNRH 3J81W 2PY9A 4B3RH 3KDKA 1ZZKA 4DR3H
chains in the Genus database with same CATH topology
2D9IA 4LF9H 3JAMW 4JYAH 4G08A 4EC5A 2E5LH 4X64H 4DV7H 2UU9H 4DV2H 4YHHH 4JI0H 4JI8H 1AN7A 1HNWH 4X65H 4B3SH 2UUAH 4JI2H 2UXBH 5IT9W 5DT9A 4JI3H 4LFBH 4JI6H 4NXNH 2O4CA 3T1HH 3QD7X 4LF6H 1FKAH 3J7AK 4AQYH 1N36H 5LMUH 3SB1A 1N32H 4GKJH 5FLXW 4E9JA 4DR7H 4YY3H 4NZTM 3OTOH 4DV6H 4DR5H 2UXDH 4JI7H 4JI4H 5LL6b 3GR5A 5LMNH 1J5EH 5BR8H 1HR0H 4JI5H 4K0KH 1IBKH 3KDGA 1IBMH 4DR1H 3OETA 3OSSD 3T1YH 4GKKH 5A2QW 4LFAH 4KHPH 4B3TH 3J80W 4NXMH 4LF8H 2ZQEA 1I6UA 2F4VH 4JV5H 2ZM6H 4DV0H 1I94H 4B8CD 3FAUA 1XMOH 2Y3MA 2HHHH 2VQEH 4LF4H 1S03G 2UXCH 4LF7H 4DR2H 4DR6H 2LF0A 1HNXH 4JI1H 4X62H 4DV1H 4DR4H 1IBLH 4LF5H 4LFCH 1N34H 4DUZH 3EZJA 5IWAH 4X66H 4PDBA 1SEIA 4B3MH 2UUCH 4DUYH 2FPHX 4OCHA 1HNZH 1FJGH 4OD6A 4DV3H 4NZRM 1X9ZA 1N33H 4DV4H 4DV5H 1XMQH 3RF2A 2PT7G 2UUBH 1ODHA 1F0XA 1XNQH 4OX9H 3GABA 2VQFH 3NCVA 2VKCA 1XNRH 3J81W 4B3RH 3KDKA 4DR3H
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4OCH A;  2D9I A;  3FAU A;  4OD6 A;  2VKC A;  3QD7 X;  2ZQE A; 
#chains in the Genus database with same CATH topology
 2D9I A;  3V69 A;  1J4W A;  4LF9 H;  5K36 G;  3JAM W;  1PQX A;  3GKU A;  4JYA H;  3VKE A;  1X4M A;  4G08 A;  4EC5 A;  2E5L H;  4JVH A;  4X64 H;  4DV7 H;  2UU9 H;  4DV2 H;  2M8W A;  4YHH H;  4JI0 H;  1VBI A;  4JI8 H;  1AN7 A;  1V9N A;  4FJS A;  1HNW H;  2Z0S A;  4LIJ A;  4X65 H;  2JE6 I;  4B3S H;  2UUA H;  4JI2 H;  2UXB H;  2CTE A;  4IFD G;  5IT9 W;  5DT9 A;  4JI3 H;  4LFB H;  4JI6 H;  2OPU A;  4NXN H;  2CPQ A;  2O4C A;  2FFM A;  4BA1 I;  3T1H H;  4B8T A;  4FJU A;  3QD7 X;  1VIG A;  4LF6 H;  1FKA H;  3J7A K;  4AQY H;  2CTL A;  2LTM A;  1S20 A;  2CTM A;  1J5K A;  2LTL A;  1N36 H;  1K1G A;  4BA2 I;  5LMU H;  2YQR A;  1NXU A;  3SB1 A;  1N32 H;  4GKJ H;  2BA0 A;  5FLX W;  4E9J A;  4DR7 H;  4YY3 H;  4NZT M;  1VIH A;  3OTO H;  1XRH A;  4DV6 H;  4DR5 H;  2ANR A;  2UXD H;  2HH2 A;  4JI7 H;  4JI4 H;  2DGR A;  1MSZ A;  5LL6 b;  2LRR A;  3GR5 A;  5LMN H;  3AEV B;  1TUA A;  1J5E H;  4AM3 A;  5BR8 H;  1ZZI A;  1HR0 H;  4JI5 H;  4K0K H;  2CTJ A;  1WVN A;  2AXY A;  1Z2I A;  1IBK H;  2P2R A;  3KDG A;  2HH3 A;  4QMF B;  1ZZJ A;  2JVZ A;  2CPM A;  1WE8 A;  4WAL A;  1IBM H;  4OO1 G;  4DR1 H;  3OET A;  3OSS D;  2M6Q A;  2CWF A;  5A2Q W;  3T1Y H;  4GKK H;  2G8Y A;  4LFA H;  2JEA I;  4KHP H;  4B3T H;  4WAN A;  1V8C A;  3J80 W;  2JZX A;  4NXM H;  2PQU A;  4LF8 H;  2ZQE A;  1I6U A;  2NN6 G;  4H8A A;  2OPV A;  2F4V H;  4JV5 H;  2ZM6 H;  4DV0 H;  1I94 H;  1WTJ A;  4B8C D;  3FAU A;  1XMO H;  5C0X G;  4AIM A;  2Y3M A;  2HHH H;  2VQE H;  4LF4 H;  1S03 G;  2UXC H;  2CTF A;  4LF7 H;  5JEA G;  4DR2 H;  4DR6 H;  2LF0 A;  2JA9 A;  1HNX H;  4JI1 H;  4X62 H;  4DV1 H;  4DR4 H;  1IBL H;  3U1K A;  4LF5 H;  4LFC H;  1N34 H;  4DUZ H;  2A1S A;  3EZJ A;  2JEB I;  2CWH A;  2X06 A;  1ZTG A;  1X4N A;  5IWA H;  3I0P A;  4X66 H;  4PDB A;  1SEI A;  4B3M H;  1KHM A;  2UUC H;  4JVY A;  1EC6 A;  4NBQ A;  4DUY H;  2FPH X;  1DTJ A;  1X0A A;  4OCH A;  2BL5 A;  2E3U A;  1WHR A;  1UG8 A;  1HNZ H;  1FJG H;  3L7Z C;  4OD6 A;  2QND A;  4DV3 H;  4NZR M;  1X9Z A;  1N33 H;  2MJH A;  4DV4 H;  4DV5 H;  1XMQ H;  2CTK A;  3RF2 A;  1DT4 A;  2ANN A;  2PT7 G;  2K1H A;  2UUB H;  1ODH A;  1F0X A;  1XNQ H;  3UOE A;  4OX9 H;  3GAB A;  2VQF H;  3NCV A;  2FMR A;  2VKC A;  1XNR H;  3J81 W;  2PY9 A;  4B3R H;  3KDK A;  1ZZK A;  4DR3 H; 
#chains in the Genus database with same CATH homology
 2D9I A;  4LF9 H;  3JAM W;  4JYA H;  4G08 A;  4EC5 A;  2E5L H;  4X64 H;  4DV7 H;  2UU9 H;  4DV2 H;  4YHH H;  4JI0 H;  4JI8 H;  1AN7 A;  1HNW H;  4X65 H;  4B3S H;  2UUA H;  4JI2 H;  2UXB H;  5IT9 W;  5DT9 A;  4JI3 H;  4LFB H;  4JI6 H;  4NXN H;  2O4C A;  3T1H H;  3QD7 X;  4LF6 H;  1FKA H;  3J7A K;  4AQY H;  1N36 H;  5LMU H;  3SB1 A;  1N32 H;  4GKJ H;  5FLX W;  4E9J A;  4DR7 H;  4YY3 H;  4NZT M;  3OTO H;  4DV6 H;  4DR5 H;  2UXD H;  4JI7 H;  4JI4 H;  5LL6 b;  3GR5 A;  5LMN H;  1J5E H;  5BR8 H;  1HR0 H;  4JI5 H;  4K0K H;  1IBK H;  3KDG A;  1IBM H;  4DR1 H;  3OET A;  3OSS D;  3T1Y H;  4GKK H;  5A2Q W;  4LFA H;  4KHP H;  4B3T H;  3J80 W;  4NXM H;  4LF8 H;  2ZQE A;  1I6U A;  2F4V H;  4JV5 H;  2ZM6 H;  4DV0 H;  1I94 H;  4B8C D;  3FAU A;  1XMO H;  2Y3M A;  2HHH H;  2VQE H;  4LF4 H;  1S03 G;  2UXC H;  4LF7 H;  4DR2 H;  4DR6 H;  2LF0 A;  1HNX H;  4JI1 H;  4X62 H;  4DV1 H;  4DR4 H;  1IBL H;  4LF5 H;  4LFC H;  1N34 H;  4DUZ H;  3EZJ A;  5IWA H;  4X66 H;  4PDB A;  1SEI A;  4B3M H;  2UUC H;  4DUY H;  2FPH X;  4OCH A;  1HNZ H;  1FJG H;  4OD6 A;  4DV3 H;  4NZR M;  1X9Z A;  1N33 H;  4DV4 H;  4DV5 H;  1XMQ H;  3RF2 A;  2PT7 G;  2UUB H;  1ODH A;  1F0X A;  1XNQ H;  4OX9 H;  3GAB A;  2VQF H;  3NCV A;  2VKC A;  1XNR H;  3J81 W;  4B3R H;  3KDK A;  4DR3 H; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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