1X4NA

Solution structure of kh domain in fuse binding protein 1
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
92
structure length
92
Chain Sequence
GSSGSSGHQQQRSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKGRSGPSSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Rna binding protein
molecule keywords Far upstream element binding protein 1
publication title Solution structure of KH domain in FUSE binding protein 1
rcsb
source organism Mus musculus
total genus 15
structure length 92
sequence length 92
ec nomenclature
pdb deposition date 2005-05-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00013 KH_1 KH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 1x4nA00
4WANA 2CTKA 1TUAA 2CTMA 2Z0SA 1WE8A 2JE6I 2MJHA 2JVZA 2JZXA 4B8TA 4BA2I 4BA1I 2DGRA 2PQUA 3VKEA 4LIJA 1VIHA 1X4MA 2OPVA 1ZZIA 5C0XG 2AXYA 2PY9A 4AM3A 2CPQA 2FMRA 2HH2A 1ZZJA 2ANNA 2BL5A 1ZZKA 2NN6G 1J4WA 3AEVB 1DT4A 2E3UA 5K36G 2QNDA 4OO1G 2BA0A 2YQRA 2HH3A 3V69A 1X4NA 5JEAG 3U1KA 2CTJA 2ANRA 2CTLA 2OPUA 2P2RA 4JVYA 2JA9A 4WALA 1J5KA 1K1GA 1ZTGA 1EC6A 4AIMA 4NBQA 1KHMA 2JEBI 3L7ZC 1VIGA 2JEAI 4IFDG 2CTEA 1DTJA 2CTFA 4QMFB 1WVNA 4JVHA
chains in the Genus database with same CATH superfamily
4K0KH 2CTKA 2Z0SA 3T1HH 4YHHH 1F0XA 4BA2I 2UXCH 4G08A 1N36H 1S03G 2LTMA 3KDKA 2X06A 4OD6A 2M8WA 1J5EH 4DR6H 4DR2H 1X4MA 4FJUA 2ZM6H 4JI5H 2AXYA 3EZJA 1UG8A 2VQEH 1WTJA 1N34H 3I0PA 3JAMW 4B3TH 3V69A 2LF0A 1X4NA 4YY3H 4NXMH 3RF2A 2E5LH 4JI7H 4LF7H 3QD7X 2ZQEA 4LFBH 1I6UA 4H8AA 4JVYA 2Y3MA 1J5KA 3GABA 2UUAH 2VKCA 5LL6b 2UU9H 4B3MH 1NXUA 1S20A 3J80W 4DR1H 2HHHH 3J81W 1I94H 4JI0H 1FJGH 1TUAA 2CTMA 4AQYH 4JI2H 4GKJH 1Z2IA 2JE6I 2CWHA 4LFCH 4BA1I 3OSSD 2DGRA 3OETA 1N33H 5A2QW 1VIHA 4JI6H 4DV3H 2CPQA 4JV5H 1V8CA 2D9IA 3T1YH 2ANNA 1HNXH 1J4WA 4LF9H 2O4CA 1MSZA 2E3UA 2QNDA 3GKUA 4OX9H 5JEAG 4DR4H 1PQXA 4NXNH 4DV6H 2OPUA 2LTLA 1IBKH 2A1SA 4PDBA 2FFMA 1EC6A 4DR5H 4B8CD 1V9NA 4DV4H 4X65H 4QMFB 4DV1H 4WANA 2FPHX 2UUCH 1N32H 4B3RH 3VKEA 4LIJA 4DR3H 4B3SH 1HNWH 4AM3A 1XNQH 4X64H 5FLXW 2BL5A 2NN6G 5IWAH 3AEVB 5K36G 4OO1G 4FJSA 2HH3A 4DV2H 4X66H 4DV5H 2CTJA 1IBMH 2ANRA 4NZTM 2JA9A 5BR8H 4WALA 1K1GA 4JI3H 2UXBH 3KDGA 1FKAH 4JI8H 1VIGA 1HNZH 3OTOH 2JEAI 5LMUH 4OCHA 2CTEA 1DTJA 3UOEA 2JVZA 2CTFA 2CPMA 1ZTGA 1IBLH 5IT9W 4LF5H 5LMNH 4JVHA 5DT9A 4NZRM 1WE8A 4LF4H 4E9JA 2MJHA 2VQFH 4LF6H 2JZXA 3J7AK 4B8TA 1XNRH 4LFAH 2PQUA 4X62H 1WHRA 4JI4H 4JYAH 2F4VH 2K1HA 2CWFA 3FAUA 4DV0H 2UXDH 2OPVA 1ZZIA 5C0XG 2PY9A 2M6QA 2UUBH 2FMRA 2HH2A 1ZZJA 1ZZKA 3NCVA 4KHPH 1DT4A 1XRHA 1XMOH 1XMQH 4GKKH 2BA0A 2PT7G 2YQRA 4DV7H 3U1KA 1SEIA 1X0AA 2CTLA 2P2RA 3GR5A 4DUZH 1HR0H 3SB1A 1KHMA 1AN7A 1X9ZA 4AIMA 4NBQA 2JEBI 1ODHA 3L7ZC 4JI1H 2LRRA 4IFDG 4EC5A 4DUYH 1VBIA 2G8YA 4DR7H 1WVNA 4LF8H
chains in the Genus database with same CATH topology
4WANA 2CTKA 1TUAA 2CTMA 2Z0SA 1WE8A 2JE6I 2MJHA 2JVZA 2JZXA 4B8TA 4BA2I 4BA1I 2DGRA 2PQUA 3VKEA 4LIJA 1VIHA 1X4MA 2OPVA 1ZZIA 5C0XG 2AXYA 2PY9A 4AM3A 2CPQA 2FMRA 2HH2A 1ZZJA 2ANNA 2BL5A 1ZZKA 2NN6G 1J4WA 3AEVB 1DT4A 2E3UA 5K36G 2QNDA 4OO1G 2BA0A 2YQRA 2HH3A 3V69A 1X4NA 5JEAG 3U1KA 2CTJA 2ANRA 2CTLA 2OPUA 2P2RA 4JVYA 2JA9A 4WALA 1J5KA 1K1GA 1ZTGA 1EC6A 4AIMA 4NBQA 1KHMA 2JEBI 3L7ZC 1VIGA 2JEAI 4IFDG 2CTEA 1DTJA 2CTFA 4QMFB 1WVNA 4JVHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4WAN A;  2CTK A;  1TUA A;  2CTM A;  2Z0S A;  1WE8 A;  2JE6 I;  2MJH A;  2JVZ A;  2JZX A;  4B8T A;  4BA2 I;  4BA1 I;  2DGR A;  2PQU A;  3VKE A;  4LIJ A;  1VIH A;  1X4M A;  2OPV A;  1ZZI A;  5C0X G;  2AXY A;  2PY9 A;  4AM3 A;  2CPQ A;  2FMR A;  2HH2 A;  1ZZJ A;  2ANN A;  2BL5 A;  1ZZK A;  2NN6 G;  1J4W A;  3AEV B;  1DT4 A;  2E3U A;  5K36 G;  2QND A;  4OO1 G;  2BA0 A;  2YQR A;  2HH3 A;  3V69 A;  1X4N A;  5JEA G;  3U1K A;  2CTJ A;  2ANR A;  2CTL A;  2OPU A;  2P2R A;  4JVY A;  2JA9 A;  4WAL A;  1J5K A;  1K1G A;  1ZTG A;  1EC6 A;  4AIM A;  4NBQ A;  1KHM A;  2JEB I;  3L7Z C;  1VIG A;  2JEA I;  4IFD G;  2CTE A;  1DTJ A;  2CTF A;  4QMF B;  1WVN A;  4JVH A; 
#chains in the Genus database with same CATH topology
 4K0K H;  2CTK A;  2Z0S A;  3T1H H;  4YHH H;  1F0X A;  4BA2 I;  2UXC H;  4G08 A;  1N36 H;  1S03 G;  2LTM A;  3KDK A;  2X06 A;  4OD6 A;  2M8W A;  1J5E H;  4DR6 H;  4DR2 H;  1X4M A;  4FJU A;  2ZM6 H;  4JI5 H;  2AXY A;  3EZJ A;  1UG8 A;  2VQE H;  1WTJ A;  1N34 H;  3I0P A;  3JAM W;  4B3T H;  3V69 A;  2LF0 A;  1X4N A;  4YY3 H;  4NXM H;  3RF2 A;  2E5L H;  4JI7 H;  4LF7 H;  3QD7 X;  2ZQE A;  4LFB H;  1I6U A;  4H8A A;  4JVY A;  2Y3M A;  1J5K A;  3GAB A;  2UUA H;  2VKC A;  5LL6 b;  2UU9 H;  4B3M H;  1NXU A;  1S20 A;  3J80 W;  4DR1 H;  2HHH H;  3J81 W;  1I94 H;  4JI0 H;  1FJG H;  1TUA A;  2CTM A;  4AQY H;  4JI2 H;  4GKJ H;  1Z2I A;  2JE6 I;  2CWH A;  4LFC H;  4BA1 I;  3OSS D;  2DGR A;  3OET A;  1N33 H;  5A2Q W;  1VIH A;  4JI6 H;  4DV3 H;  2CPQ A;  4JV5 H;  1V8C A;  2D9I A;  3T1Y H;  2ANN A;  1HNX H;  1J4W A;  4LF9 H;  2O4C A;  1MSZ A;  2E3U A;  2QND A;  3GKU A;  4OX9 H;  5JEA G;  4DR4 H;  1PQX A;  4NXN H;  4DV6 H;  2OPU A;  2LTL A;  1IBK H;  2A1S A;  4PDB A;  2FFM A;  1EC6 A;  4DR5 H;  4B8C D;  1V9N A;  4DV4 H;  4X65 H;  4QMF B;  4DV1 H;  4WAN A;  2FPH X;  2UUC H;  1N32 H;  4B3R H;  3VKE A;  4LIJ A;  4DR3 H;  4B3S H;  1HNW H;  4AM3 A;  1XNQ H;  4X64 H;  5FLX W;  2BL5 A;  2NN6 G;  5IWA H;  3AEV B;  5K36 G;  4OO1 G;  4FJS A;  2HH3 A;  4DV2 H;  4X66 H;  4DV5 H;  2CTJ A;  1IBM H;  2ANR A;  4NZT M;  2JA9 A;  5BR8 H;  4WAL A;  1K1G A;  4JI3 H;  2UXB H;  3KDG A;  1FKA H;  4JI8 H;  1VIG A;  1HNZ H;  3OTO H;  2JEA I;  5LMU H;  4OCH A;  2CTE A;  1DTJ A;  3UOE A;  2JVZ A;  2CTF A;  2CPM A;  1ZTG A;  1IBL H;  5IT9 W;  4LF5 H;  5LMN H;  4JVH A;  5DT9 A;  4NZR M;  1WE8 A;  4LF4 H;  4E9J A;  2MJH A;  2VQF H;  4LF6 H;  2JZX A;  3J7A K;  4B8T A;  1XNR H;  4LFA H;  2PQU A;  4X62 H;  1WHR A;  4JI4 H;  4JYA H;  2F4V H;  2K1H A;  2CWF A;  3FAU A;  4DV0 H;  2UXD H;  2OPV A;  1ZZI A;  5C0X G;  2PY9 A;  2M6Q A;  2UUB H;  2FMR A;  2HH2 A;  1ZZJ A;  1ZZK A;  3NCV A;  4KHP H;  1DT4 A;  1XRH A;  1XMO H;  1XMQ H;  4GKK H;  2BA0 A;  2PT7 G;  2YQR A;  4DV7 H;  3U1K A;  1SEI A;  1X0A A;  2CTL A;  2P2R A;  3GR5 A;  4DUZ H;  1HR0 H;  3SB1 A;  1KHM A;  1AN7 A;  1X9Z A;  4AIM A;  4NBQ A;  2JEB I;  1ODH A;  3L7Z C;  4JI1 H;  2LRR A;  4IFD G;  4EC5 A;  4DUY H;  1VBI A;  2G8Y A;  4DR7 H;  1WVN A;  4LF8 H; 
#chains in the Genus database with same CATH homology
 4WAN A;  2CTK A;  1TUA A;  2CTM A;  2Z0S A;  1WE8 A;  2JE6 I;  2MJH A;  2JVZ A;  2JZX A;  4B8T A;  4BA2 I;  4BA1 I;  2DGR A;  2PQU A;  3VKE A;  4LIJ A;  1VIH A;  1X4M A;  2OPV A;  1ZZI A;  5C0X G;  2AXY A;  2PY9 A;  4AM3 A;  2CPQ A;  2FMR A;  2HH2 A;  1ZZJ A;  2ANN A;  2BL5 A;  1ZZK A;  2NN6 G;  1J4W A;  3AEV B;  1DT4 A;  2E3U A;  5K36 G;  2QND A;  4OO1 G;  2BA0 A;  2YQR A;  2HH3 A;  3V69 A;  1X4N A;  5JEA G;  3U1K A;  2CTJ A;  2ANR A;  2CTL A;  2OPU A;  2P2R A;  4JVY A;  2JA9 A;  4WAL A;  1J5K A;  1K1G A;  1ZTG A;  1EC6 A;  4AIM A;  4NBQ A;  1KHM A;  2JEB I;  3L7Z C;  1VIG A;  2JEA I;  4IFD G;  2CTE A;  1DTJ A;  2CTF A;  4QMF B;  1WVN A;  4JVH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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