4EC5A

Crystal structure of the s210c (dimer) mutant from the n-terminal domain of the secretin xcpq from pseudomonas aeruginosa
Total Genus 56
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
234
structure length
218
Chain Sequence
b'AFVPAAHWTINLKDADIREFIDQISEITGETFVVDPRVKGQVSVVSKAQLSLSEVYQLFLSVMSTHGFTVVAQGDQARIVPNAAPDRLETRVIQVQQSPVSELIPLIRPLVPQYGHLAAVPSANALIISDRSANIARIEDVIRQLDQKGSHDYCVINLRYGWVMDAAEVLNNAMSRGQAKGAAGAQVIADARTNRLIILGPPQARAKLVQLAQSLDTP'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title New Insights into the Assembly of Bacterial Secretins: STRUCTURAL STUDIES OF THE PERIPLASMIC DOMAIN OF XcpQ FROM PSEUDOMONAS AERUGINOSA.
pubmed doi rcsb
molecule keywords General secretion pathway protein D
source organism Pseudomonas aeruginosa
molecule tags Protein transport
total genus 56
structure length 218
sequence length 234
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-03-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03958 Secretin_N Bacterial type II/III secretion system short domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.120 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 Ribosomal Protein S8; Chain: A, domain 1 4ec5A02
3.30.1370.120 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 Ribosomal Protein S8; Chain: A, domain 1 4ec5A01
2Y3MA 4EC5A 3OSSD 3EZJA 4E9JA 4G08A 3GR5A
chains in the Genus database with same CATH superfamily
1AN7A 4BA1I 2VQFH 1J4WA 2NN6G 4GKKH 2UUBH 3OETA 4JI5H 2O4CA 2Y3MA 4WALA 4NXNH 5BR8H 1VBIA 2OPUA 4DR2H 4LF5H 4WANA 4YY3H 4DV0H 3AEVB 2F4VH 5JEAG 1WHRA 5C0XG 2CWHA 4LF7H 2AXYA 5IWAH 3I0PA 1DT4A 2HH2A 2K1HA 4JI6H 1XRHA 2A1SA 3QD7X 1N34H 3EZJA 3VKEA 4DR6H 3L7ZC 2Z0SA 1J5EH 4LF4H 2CTEA 4DV5H 2CTKA 5IT9W 2UUCH 4B3MH 4DR4H 3U1KA 2UXBH 2CTMA 4JI1H 1KHMA 4DV1H 4KHPH 4LFBH 4NZTM 1X4MA 4DR7H 3NCVA 4AQYH 1VIHA 2DGRA 2LTMA 4X66H 2VQEH 1XMQH 2JZXA 2ZM6H 1IBKH 4LF8H 3J80W 4JI2H 3KDGA 2JEAI 4JYAH 1HNZH 4EC5A 1X9ZA 4OX9H 1N33H 5LL6b 1N36H 2JA9A 1XNQH 4DV3H 1VIGA 2FFMA 2JEBI 1HNXH 2E3UA 4NBQA 3GKUA 4OD6A 1FKAH 2QNDA 2UXDH 1WVNA 4JI0H 4IFDG 3KDKA 4PDBA 3RF2A 4JV5H 1WE8A 4B3SH 4E9JA 4X62H 3JAMW 2PT7G 1TUAA 1DTJA 1V9NA 2G8YA 2FPHX 1ZZIA 2P2RA 1HNWH 2ANRA 2D9IA 2BL5A 4NZRM 1XMOH 4K0KH 1V8CA 4JVHA 1S20A 1ODHA 2E5LH 1S03G 2UXCH 3V69A 4X64H 4H8AA 4BA2I 1N32H 5FLXW 3GR5A 1ZTGA 2M6QA 4DUZH 4B3TH 4X65H 4GKJH 2CPMA 2ZQEA 4LFAH 1Z2IA 2JE6I 3SB1A 4DR3H 4JI8H 4DV7H 5K36G 4G08A 4LFCH 3OTOH 2ANNA 1F0XA 5A2QW 3J81W 2MJHA 1SEIA 2OPVA 1ZZKA 3T1YH 2UUAH 2CTFA 4JI7H 4LF9H 4JVYA 2YQRA 5LMUH 1EC6A 2PQUA 4DV2H 2HHHH 1X0AA 3UOEA 4JI4H 2CTLA 3OSSD 4B8CD 2UU9H 1XNRH 5LMNH 4OO1G 2CWFA 2PY9A 1PQXA 4AIMA 1MSZA 1WTJA 3FAUA 4DR1H 4LF6H 3J7AK 4DV4H 4FJSA 4DUYH 1HR0H 1J5KA 2JVZA 2BA0A 2CTJA 4OCHA 4JI3H 1IBMH 1I6UA 2LRRA 2LTLA 2VKCA 2HH3A 4B8TA 1FJGH 1NXUA 4LIJA 5DT9A 2LF0A 2CPQA 3GABA 4DV6H 4DR5H 1IBLH 4B3RH 2X06A 1K1GA 1ZZJA 4FJUA 4AM3A 3T1HH 2FMRA 1UG8A 1I94H 4QMFB 2M8WA 4YHHH 1X4NA 4NXMH
chains in the Genus database with same CATH topology
1AN7A 2VQFH 4GKKH 2UUBH 3OETA 4JI5H 2O4CA 2Y3MA 4NXNH 5BR8H 4DR2H 4LF5H 4YY3H 4DV0H 2F4VH 1FJGH 4LF7H 5IWAH 4JI6H 3QD7X 1N34H 3EZJA 4DR6H 1J5EH 4LF4H 4DV5H 5IT9W 2UUCH 4B3MH 4DR4H 2UXBH 4JI1H 4DV1H 4KHPH 4LFBH 4NZTM 4DR7H 3NCVA 4AQYH 4X66H 2VQEH 1IBKH 1XMQH 2ZM6H 4LF8H 3J80W 4JI2H 3KDGA 4JYAH 1HNZH 4EC5A 1X9ZA 4OX9H 1N33H 5LL6b 1N36H 1XNQH 4DV3H 1HNXH 4OD6A 1FKAH 2UXDH 4JI0H 3KDKA 4PDBA 3RF2A 4JV5H 4B3SH 4E9JA 3JAMW 4X62H 2PT7G 2FPHX 1HNWH 2D9IA 4NZRM 1XMOH 4K0KH 2UXCH 1S03G 1ODHA 2E5LH 4X64H 1N32H 5FLXW 3GR5A 4DUZH 4B3TH 4X65H 4GKJH 2ZQEA 4LFAH 3SB1A 4DR3H 4JI8H 4DV7H 4G08A 4LFCH 3OTOH 1F0XA 5A2QW 3J81W 1SEIA 2UUAH 3T1YH 4JI7H 4LF9H 5LMUH 4DV2H 2HHHH 4JI4H 3OSSD 4B8CD 2UU9H 1XNRH 5LMNH 3FAUA 4DR1H 4LF6H 3J7AK 4DV4H 4DUYH 1HR0H 4OCHA 4JI3H 1IBMH 1I6UA 2VKCA 5DT9A 4DV6H 2LF0A 3GABA 4DR5H 1IBLH 4B3RH 3T1HH 1I94H 4YHHH 4NXMH
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Y3M A;  4EC5 A;  3OSS D;  3EZJ A;  4E9J A;  4G08 A;  3GR5 A; 
#chains in the Genus database with same CATH topology
 1AN7 A;  4BA1 I;  2VQF H;  1J4W A;  2NN6 G;  4GKK H;  2UUB H;  3OET A;  4JI5 H;  2O4C A;  2Y3M A;  4WAL A;  4NXN H;  5BR8 H;  1VBI A;  2OPU A;  4DR2 H;  4LF5 H;  4WAN A;  4YY3 H;  4DV0 H;  3AEV B;  2F4V H;  5JEA G;  1WHR A;  5C0X G;  2CWH A;  4LF7 H;  2AXY A;  5IWA H;  3I0P A;  1DT4 A;  2HH2 A;  2K1H A;  4JI6 H;  1XRH A;  2A1S A;  3QD7 X;  1N34 H;  3EZJ A;  3VKE A;  4DR6 H;  3L7Z C;  2Z0S A;  1J5E H;  4LF4 H;  2CTE A;  4DV5 H;  2CTK A;  5IT9 W;  2UUC H;  4B3M H;  4DR4 H;  3U1K A;  2UXB H;  2CTM A;  4JI1 H;  1KHM A;  4DV1 H;  4KHP H;  4LFB H;  4NZT M;  1X4M A;  4DR7 H;  3NCV A;  4AQY H;  1VIH A;  2DGR A;  2LTM A;  4X66 H;  2VQE H;  1XMQ H;  2JZX A;  2ZM6 H;  1IBK H;  4LF8 H;  3J80 W;  4JI2 H;  3KDG A;  2JEA I;  4JYA H;  1HNZ H;  4EC5 A;  1X9Z A;  4OX9 H;  1N33 H;  5LL6 b;  1N36 H;  2JA9 A;  1XNQ H;  4DV3 H;  1VIG A;  2FFM A;  2JEB I;  1HNX H;  2E3U A;  4NBQ A;  3GKU A;  4OD6 A;  1FKA H;  2QND A;  2UXD H;  1WVN A;  4JI0 H;  4IFD G;  3KDK A;  4PDB A;  3RF2 A;  4JV5 H;  1WE8 A;  4B3S H;  4E9J A;  4X62 H;  3JAM W;  2PT7 G;  1TUA A;  1DTJ A;  1V9N A;  2G8Y A;  2FPH X;  1ZZI A;  2P2R A;  1HNW H;  2ANR A;  2D9I A;  2BL5 A;  4NZR M;  1XMO H;  4K0K H;  1V8C A;  4JVH A;  1S20 A;  1ODH A;  2E5L H;  1S03 G;  2UXC H;  3V69 A;  4X64 H;  4H8A A;  4BA2 I;  1N32 H;  5FLX W;  3GR5 A;  1ZTG A;  2M6Q A;  4DUZ H;  4B3T H;  4X65 H;  4GKJ H;  2CPM A;  2ZQE A;  4LFA H;  1Z2I A;  2JE6 I;  3SB1 A;  4DR3 H;  4JI8 H;  4DV7 H;  5K36 G;  4G08 A;  4LFC H;  3OTO H;  2ANN A;  1F0X A;  5A2Q W;  3J81 W;  2MJH A;  1SEI A;  2OPV A;  1ZZK A;  3T1Y H;  2UUA H;  2CTF A;  4JI7 H;  4LF9 H;  4JVY A;  2YQR A;  5LMU H;  1EC6 A;  2PQU A;  4DV2 H;  2HHH H;  1X0A A;  3UOE A;  4JI4 H;  2CTL A;  3OSS D;  4B8C D;  2UU9 H;  1XNR H;  5LMN H;  4OO1 G;  2CWF A;  2PY9 A;  1PQX A;  4AIM A;  1MSZ A;  1WTJ A;  3FAU A;  4DR1 H;  4LF6 H;  3J7A K;  4DV4 H;  4FJS A;  4DUY H;  1HR0 H;  1J5K A;  2JVZ A;  2BA0 A;  2CTJ A;  4OCH A;  4JI3 H;  1IBM H;  1I6U A;  2LRR A;  2LTL A;  2VKC A;  2HH3 A;  4B8T A;  1FJG H;  1NXU A;  4LIJ A;  5DT9 A;  2LF0 A;  2CPQ A;  3GAB A;  4DV6 H;  4DR5 H;  1IBL H;  4B3R H;  2X06 A;  1K1G A;  1ZZJ A;  4FJU A;  4AM3 A;  3T1H H;  2FMR A;  1UG8 A;  1I94 H;  4QMF B;  2M8W A;  4YHH H;  1X4N A;  4NXM H; 
#chains in the Genus database with same CATH homology
 1AN7 A;  2VQF H;  4GKK H;  2UUB H;  3OET A;  4JI5 H;  2O4C A;  2Y3M A;  4NXN H;  5BR8 H;  4DR2 H;  4LF5 H;  4YY3 H;  4DV0 H;  2F4V H;  1FJG H;  4LF7 H;  5IWA H;  4JI6 H;  3QD7 X;  1N34 H;  3EZJ A;  4DR6 H;  1J5E H;  4LF4 H;  4DV5 H;  5IT9 W;  2UUC H;  4B3M H;  4DR4 H;  2UXB H;  4JI1 H;  4DV1 H;  4KHP H;  4LFB H;  4NZT M;  4DR7 H;  3NCV A;  4AQY H;  4X66 H;  2VQE H;  1IBK H;  1XMQ H;  2ZM6 H;  4LF8 H;  3J80 W;  4JI2 H;  3KDG A;  4JYA H;  1HNZ H;  4EC5 A;  1X9Z A;  4OX9 H;  1N33 H;  5LL6 b;  1N36 H;  1XNQ H;  4DV3 H;  1HNX H;  4OD6 A;  1FKA H;  2UXD H;  4JI0 H;  3KDK A;  4PDB A;  3RF2 A;  4JV5 H;  4B3S H;  4E9J A;  3JAM W;  4X62 H;  2PT7 G;  2FPH X;  1HNW H;  2D9I A;  4NZR M;  1XMO H;  4K0K H;  2UXC H;  1S03 G;  1ODH A;  2E5L H;  4X64 H;  1N32 H;  5FLX W;  3GR5 A;  4DUZ H;  4B3T H;  4X65 H;  4GKJ H;  2ZQE A;  4LFA H;  3SB1 A;  4DR3 H;  4JI8 H;  4DV7 H;  4G08 A;  4LFC H;  3OTO H;  1F0X A;  5A2Q W;  3J81 W;  1SEI A;  2UUA H;  3T1Y H;  4JI7 H;  4LF9 H;  5LMU H;  4DV2 H;  2HHH H;  4JI4 H;  3OSS D;  4B8C D;  2UU9 H;  1XNR H;  5LMN H;  3FAU A;  4DR1 H;  4LF6 H;  3J7A K;  4DV4 H;  4DUY H;  1HR0 H;  4OCH A;  4JI3 H;  1IBM H;  1I6U A;  2VKC A;  5DT9 A;  4DV6 H;  2LF0 A;  3GAB A;  4DR5 H;  1IBL H;  4B3R H;  3T1H H;  1I94 H;  4YHH H;  4NXM H; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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