4EC5A

Crystal structure of the s210c (dimer) mutant from the n-terminal domain of the secretin xcpq from pseudomonas aeruginosa
Total Genus 56
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
234
structure length
218
Chain Sequence
AFVPAAHWTINLKDADIREFIDQISEITGETFVVDPRVKGQVSVVSKAQLSLSEVYQLFLSVMSTHGFTVVAQGDQARIVPNAAPDRLETRVIQVQQSPVSELIPLIRPLVPQYGHLAAVPSANALIISDRSANIARIEDVIRQLDQKGSHDYCVINLRYGWVMDAAEVLNNAMSRGQAKGAAGAQVIADARTNRLIILGPPQARAKLVQLAQSLDTP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein transport
source organism Pseudomonas aeruginosa
publication title New Insights into the Assembly of Bacterial Secretins: STRUCTURAL STUDIES OF THE PERIPLASMIC DOMAIN OF XcpQ FROM PSEUDOMONAS AERUGINOSA.
pubmed doi rcsb
molecule keywords General secretion pathway protein D
total genus 56
structure length 218
sequence length 234
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-03-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03958 Secretin_N Bacterial type II/III secretion system short domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.120 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 Ribosomal Protein S8; Chain: A, domain 1 4ec5A02
3.30.1370.120 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 Ribosomal Protein S8; Chain: A, domain 1 4ec5A01
4EC5A 3OSSD 2Y3MA 3EZJA 4E9JA 3GR5A 4G08A
chains in the Genus database with same CATH superfamily
2LTLA 4LFAH 4BA1I 1ZTGA 2FPHX 3OSSD 4LF9H 3KDKA 3JAMW 3GR5A 4QMFB 1N33H 4PDBA 4G08A 4YHHH 2UXDH 2JA9A 2PY9A 2G8YA 3SB1A 1ZZIA 3EZJA 2VQFH 4H8AA 1J5EH 2JZXA 3J81W 3KDGA 1N36H 2UXCH 4BA2I 1HNZH 2NN6G 1WE8A 5A2QW 4FJSA 2HH3A 1XRHA 4NZTM 4DUZH 4DR3H 4IFDG 4OCHA 1HR0H 4X66H 2CWHA 5C0XG 2JVZA 2UXBH 2UU9H 2D9IA 2VKCA 1DTJA 2Z0SA 1MSZA 5DT9A 4DV4H 2UUAH 4K0KH 2CPQA 2M6QA 2FFMA 3NCVA 2FMRA 1X4NA 2LTMA 4DV2H 1IBKH 2MJHA 4JI0H 4LF5H 3AEVB 2O4CA 4DR6H 5K36G 4JI7H 2ANNA 1S20A 3UOEA 3FAUA 2QNDA 1VIHA 1I94H 2E5LH 1F0XA 3L7ZC 2HHHH 1V8CA 2CTJA 4DV3H 2CTEA 1KHMA 1DT4A 2BL5A 3RF2A 1N32H 3OETA 4X64H 4FJUA 4DR7H 4GKKH 4LIJA 2ZM6H 1VBIA 2M8WA 3OTOH 4DV5H 4JI8H 5LL6b 2UUBH 2VQEH 2CTMA 2Y3MA 4JVHA 3GABA 4DV6H 5BR8H 4B3MH 4DV0H 2OPUA 2PQUA 2E3UA 4JV5H 4NZRM 5FLXW 1N34H 1XMOH 3QD7X 3T1HH 4JI1H 4B3TH 4WANA 4LF7H 2BA0A 4WALA 1TUAA 4AIMA 2ZQEA 2PT7G 1HNXH 1S03G 2P2RA 4OO1G 4JI3H 4NXMH 4B3SH 4LF8H 4JYAH 1HNWH 3T1YH 2F4VH 1PQXA 4YY3H 2LRRA 2JEAI 5IWAH 3VKEA 1FJGH 3V69A 1SEIA 4DR5H 4JI6H 4B8TA 1XNQH 4DV1H 1XNRH 1XMQH 1WVNA 2HH2A 1WTJA 1Z2IA 2CTLA 2CTFA 1K1GA 4DR1H 2CTKA 1IBMH 4GKJH 1I6UA 4OD6A 1WHRA 1V9NA 2YQRA 4LFBH 1X4MA 4NXNH 3GKUA 4X65H 1AN7A 4EC5A 4DR2H 4DR4H 5LMUH 4JI5H 4JI4H 5IT9W 3U1KA 2UUCH 2ANRA 4KHPH 2DGRA 4X62H 2K1HA 5LMNH 4B3RH 2A1SA 4AQYH 2CPMA 3I0PA 1NXUA 1X0AA 4AM3A 2LF0A 4JI2H 2X06A 2AXYA 2OPVA 1ODHA 4LF4H 4LFCH 1X9ZA 3J7AK 4DV7H 4DUYH 1FKAH 1IBLH 1VIGA 4E9JA 4OX9H 1UG8A 5JEAG 4NBQA 2JE6I 2CWFA 2JEBI 1J5KA 4LF6H 1ZZKA 4JVYA 1EC6A 3J80W 4B8CD 1ZZJA 1J4WA
chains in the Genus database with same CATH topology
4LFAH 2FPHX 3OSSD 4LF9H 3KDKA 3JAMW 3GR5A 1N33H 4PDBA 4G08A 4YHHH 2UXDH 3SB1A 3EZJA 2VQFH 1J5EH 3J81W 3KDGA 1N36H 2UXCH 1HNZH 2UXBH 5A2QW 4NZTM 4DUZH 4DR3H 4OCHA 1HR0H 4X66H 2UU9H 2D9IA 2VKCA 5DT9A 4DV4H 2UUAH 4K0KH 3NCVA 1IBKH 4DV2H 4LF5H 4JI0H 4DR6H 2O4CA 4JI7H 3FAUA 1I94H 2E5LH 1F0XA 2HHHH 4DV3H 3RF2A 1N32H 3OETA 4X64H 4DR7H 4GKKH 2ZM6H 3OTOH 4DV5H 4JI8H 5LL6b 2UUBH 2VQEH 2Y3MA 3GABA 4DV6H 5BR8H 4B3MH 4DV0H 4JV5H 4NZRM 5FLXW 1N34H 1XMOH 3T1HH 3QD7X 4JI1H 4B3TH 4LF7H 2ZQEA 2PT7G 1HNXH 1S03G 4JI3H 4NXMH 4B3SH 4LF8H 4JYAH 1HNWH 3T1YH 2F4VH 4YY3H 5IWAH 1FJGH 4JI6H 1SEIA 4DR5H 1XNQH 1XNRH 4DV1H 1XMQH 4DR1H 1IBMH 4GKJH 1I6UA 4OD6A 4LFBH 4NXNH 4X65H 1AN7A 4EC5A 4DR2H 4DR4H 5LMUH 4JI5H 4JI4H 5IT9W 2UUCH 4KHPH 4X62H 5LMNH 4B3RH 4AQYH 2LF0A 4JI2H 1ODHA 4LFCH 4LF4H 1X9ZA 3J7AK 4DV7H 4DUYH 1FKAH 1IBLH 4E9JA 4OX9H 4LF6H 3J80W 4B8CD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4EC5 A;  3OSS D;  2Y3M A;  3EZJ A;  4E9J A;  3GR5 A;  4G08 A; 
#chains in the Genus database with same CATH topology
 2LTL A;  4LFA H;  4BA1 I;  1ZTG A;  2FPH X;  3OSS D;  4LF9 H;  3KDK A;  3JAM W;  3GR5 A;  4QMF B;  1N33 H;  4PDB A;  4G08 A;  4YHH H;  2UXD H;  2JA9 A;  2PY9 A;  2G8Y A;  3SB1 A;  1ZZI A;  3EZJ A;  2VQF H;  4H8A A;  1J5E H;  2JZX A;  3J81 W;  3KDG A;  1N36 H;  2UXC H;  4BA2 I;  1HNZ H;  2NN6 G;  1WE8 A;  5A2Q W;  4FJS A;  2HH3 A;  1XRH A;  4NZT M;  4DUZ H;  4DR3 H;  4IFD G;  4OCH A;  1HR0 H;  4X66 H;  2CWH A;  5C0X G;  2JVZ A;  2UXB H;  2UU9 H;  2D9I A;  2VKC A;  1DTJ A;  2Z0S A;  1MSZ A;  5DT9 A;  4DV4 H;  2UUA H;  4K0K H;  2CPQ A;  2M6Q A;  2FFM A;  3NCV A;  2FMR A;  1X4N A;  2LTM A;  4DV2 H;  1IBK H;  2MJH A;  4JI0 H;  4LF5 H;  3AEV B;  2O4C A;  4DR6 H;  5K36 G;  4JI7 H;  2ANN A;  1S20 A;  3UOE A;  3FAU A;  2QND A;  1VIH A;  1I94 H;  2E5L H;  1F0X A;  3L7Z C;  2HHH H;  1V8C A;  2CTJ A;  4DV3 H;  2CTE A;  1KHM A;  1DT4 A;  2BL5 A;  3RF2 A;  1N32 H;  3OET A;  4X64 H;  4FJU A;  4DR7 H;  4GKK H;  4LIJ A;  2ZM6 H;  1VBI A;  2M8W A;  3OTO H;  4DV5 H;  4JI8 H;  5LL6 b;  2UUB H;  2VQE H;  2CTM A;  2Y3M A;  4JVH A;  3GAB A;  4DV6 H;  5BR8 H;  4B3M H;  4DV0 H;  2OPU A;  2PQU A;  2E3U A;  4JV5 H;  4NZR M;  5FLX W;  1N34 H;  1XMO H;  3QD7 X;  3T1H H;  4JI1 H;  4B3T H;  4WAN A;  4LF7 H;  2BA0 A;  4WAL A;  1TUA A;  4AIM A;  2ZQE A;  2PT7 G;  1HNX H;  1S03 G;  2P2R A;  4OO1 G;  4JI3 H;  4NXM H;  4B3S H;  4LF8 H;  4JYA H;  1HNW H;  3T1Y H;  2F4V H;  1PQX A;  4YY3 H;  2LRR A;  2JEA I;  5IWA H;  3VKE A;  1FJG H;  3V69 A;  1SEI A;  4DR5 H;  4JI6 H;  4B8T A;  1XNQ H;  4DV1 H;  1XNR H;  1XMQ H;  1WVN A;  2HH2 A;  1WTJ A;  1Z2I A;  2CTL A;  2CTF A;  1K1G A;  4DR1 H;  2CTK A;  1IBM H;  4GKJ H;  1I6U A;  4OD6 A;  1WHR A;  1V9N A;  2YQR A;  4LFB H;  1X4M A;  4NXN H;  3GKU A;  4X65 H;  1AN7 A;  4EC5 A;  4DR2 H;  4DR4 H;  5LMU H;  4JI5 H;  4JI4 H;  5IT9 W;  3U1K A;  2UUC H;  2ANR A;  4KHP H;  2DGR A;  4X62 H;  2K1H A;  5LMN H;  4B3R H;  2A1S A;  4AQY H;  2CPM A;  3I0P A;  1NXU A;  1X0A A;  4AM3 A;  2LF0 A;  4JI2 H;  2X06 A;  2AXY A;  2OPV A;  1ODH A;  4LF4 H;  4LFC H;  1X9Z A;  3J7A K;  4DV7 H;  4DUY H;  1FKA H;  1IBL H;  1VIG A;  4E9J A;  4OX9 H;  1UG8 A;  5JEA G;  4NBQ A;  2JE6 I;  2CWF A;  2JEB I;  1J5K A;  4LF6 H;  1ZZK A;  4JVY A;  1EC6 A;  3J80 W;  4B8C D;  1ZZJ A;  1J4W A; 
#chains in the Genus database with same CATH homology
 4LFA H;  2FPH X;  3OSS D;  4LF9 H;  3KDK A;  3JAM W;  3GR5 A;  1N33 H;  4PDB A;  4G08 A;  4YHH H;  2UXD H;  3SB1 A;  3EZJ A;  2VQF H;  1J5E H;  3J81 W;  3KDG A;  1N36 H;  2UXC H;  1HNZ H;  2UXB H;  5A2Q W;  4NZT M;  4DUZ H;  4DR3 H;  4OCH A;  1HR0 H;  4X66 H;  2UU9 H;  2D9I A;  2VKC A;  5DT9 A;  4DV4 H;  2UUA H;  4K0K H;  3NCV A;  1IBK H;  4DV2 H;  4LF5 H;  4JI0 H;  4DR6 H;  2O4C A;  4JI7 H;  3FAU A;  1I94 H;  2E5L H;  1F0X A;  2HHH H;  4DV3 H;  3RF2 A;  1N32 H;  3OET A;  4X64 H;  4DR7 H;  4GKK H;  2ZM6 H;  3OTO H;  4DV5 H;  4JI8 H;  5LL6 b;  2UUB H;  2VQE H;  2Y3M A;  3GAB A;  4DV6 H;  5BR8 H;  4B3M H;  4DV0 H;  4JV5 H;  4NZR M;  5FLX W;  1N34 H;  1XMO H;  3T1H H;  3QD7 X;  4JI1 H;  4B3T H;  4LF7 H;  2ZQE A;  2PT7 G;  1HNX H;  1S03 G;  4JI3 H;  4NXM H;  4B3S H;  4LF8 H;  4JYA H;  1HNW H;  3T1Y H;  2F4V H;  4YY3 H;  5IWA H;  1FJG H;  4JI6 H;  1SEI A;  4DR5 H;  1XNQ H;  1XNR H;  4DV1 H;  1XMQ H;  4DR1 H;  1IBM H;  4GKJ H;  1I6U A;  4OD6 A;  4LFB H;  4NXN H;  4X65 H;  1AN7 A;  4EC5 A;  4DR2 H;  4DR4 H;  5LMU H;  4JI5 H;  4JI4 H;  5IT9 W;  2UUC H;  4KHP H;  4X62 H;  5LMN H;  4B3R H;  4AQY H;  2LF0 A;  4JI2 H;  1ODH A;  4LFC H;  4LF4 H;  1X9Z A;  3J7A K;  4DV7 H;  4DUY H;  1FKA H;  1IBL H;  4E9J A;  4OX9 H;  4LF6 H;  3J80 W;  4B8C D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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